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This commit is contained in:
Tiago Gomes 2012-12-18 22:47:43 +00:00
parent 4b0acbf8c1
commit 0a661b0462
4 changed files with 99 additions and 88 deletions
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15
packages/CLPBN/clpbn/horus.yap
View File

@ -8,8 +8,8 @@
[set_horus_flag/1,
cpp_create_lifted_network/3,
cpp_create_ground_network/4,
cpp_set_parfactors_params/2,
cpp_set_factors_params/2,
cpp_set_parfactors_params/3,
cpp_set_factors_params/3,
cpp_run_lifted_solver/3,
cpp_run_ground_solver/3,
cpp_set_vars_information/2,
@ -18,8 +18,9 @@
cpp_free_ground_network/1
]).
:- use_module(library(clpbn),
[set_clpbn_flag/2]).
:- catch(load_foreign_files([horus], [], init_predicates), _, patch_things_up)
-> true ; warning.
patch_things_up :-
@ -27,11 +28,7 @@ patch_things_up :-
warning :-
format(user_error,"Horus library not installed: cannot use bp, fove~n.",[]).
:- catch(load_foreign_files([horus], [], init_predicates), _, patch_things_up)
-> true ; warning.
format(user_error,"Horus library not installed: cannot use hve, bp, cbp, lve, lkc and lbp~n.",[]).
set_horus_flag(K,V) :- cpp_set_horus_flag(K,V).

57
packages/CLPBN/clpbn/horus_ground.yap
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@ -17,19 +17,24 @@
:- use_module(horus,
[cpp_create_ground_network/4,
cpp_set_factors_params/2,
cpp_set_factors_params/3,
cpp_run_ground_solver/3,
cpp_free_ground_network/1,
cpp_set_vars_information/2
]).
:- use_module(library('clpbn/numbers')).
:- use_module(library('clpbn/numbers'),
[lists_of_keys_to_ids/6,
keys_to_numbers/7
]).
:- use_module(library('clpbn/display'),
[clpbn_bind_vals/3]).
:- use_module(library(pfl),
[skolem/2]).
[get_pfl_parameters/2,
skolem/2
]).
:- use_module(library(charsio),
[term_to_atom/2]).
@ -37,40 +42,48 @@
:- use_module(library(maplist)).
call_horus_ground_solver(QueryVars, QueryKeys, AllKeys, Factors, Evidence, Output) :-
call_horus_ground_solver(QueryVars, QueryKeys, AllKeys, Factors, Evidence,
Output) :-
init_horus_ground_solver(QueryKeys, AllKeys, Factors, Evidence, State),
run_horus_ground_solver([QueryKeys], Solutions, State),
clpbn_bind_vals([QueryVars], Solutions, Output),
end_horus_ground_solver(State).
run_horus_ground_solver(QueryKeys, Solutions, state(Network,Hash,Id)) :-
%maplist(get_dists_parameters, DistIds, DistsParams),
%cpp_set_factors_params(Network, DistsParams),
init_horus_ground_solver(QueryKeys, AllKeys, Factors, Evidence,
state(Network,Hash,Id,DistIds)) :-
factors_type(Factors, Type),
keys_to_numbers(AllKeys, Factors, Evidence, Hash, Id, FacIds, EvIds),
%writeln(network:(type=Type, factors=FacIds, evidence=EvIds)), nl,
cpp_create_ground_network(Type, FacIds, EvIds, Network),
%maplist(term_to_atom, AllKeys, VarNames),
%maplist(get_domain, AllKeys, Domains),
%cpp_set_vars_information(VarNames, Domains),
maplist(get_dist_id, FacIds, DistIds0),
sort(DistIds0, DistIds).
run_horus_ground_solver(QueryKeys, Solutions,
state(Network,Hash,Id, DistIds)) :-
lists_of_keys_to_ids(QueryKeys, QueryIds, Hash, _, Id, _),
%maplist(get_pfl_parameters, DistIds, DistParams),
%cpp_set_factors_params(Network, DistIds, DistParams),
cpp_run_ground_solver(Network, QueryIds, Solutions).
init_horus_ground_solver(QueryKeys, AllKeys, Factors, Evidence, state(Network,Hash4,Id4)) :-
get_factors_type(Factors, Type),
keys_to_numbers(AllKeys, Factors, Evidence, Hash4, Id4, FactorIds, EvidenceIds),
cpp_create_ground_network(Type, FactorIds, EvidenceIds, Network),
%writeln(network:(Type, FactorIds, EvidenceIds, Network)), writeln(''),
maplist(get_var_information, AllKeys, StatesNames),
maplist(term_to_atom, AllKeys, KeysAtoms),
cpp_set_vars_information(KeysAtoms, StatesNames).
end_horus_ground_solver(state(Network,_Hash,_Id)) :-
end_horus_ground_solver(state(Network,_Hash,_Id, _DistIds)) :-
cpp_free_ground_network(Network).
get_factors_type([f(bayes, _, _)|_], bayes) :- ! .
get_factors_type([f(markov, _, _)|_], markov) :- ! .
factors_type([f(bayes, _, _)|_], bayes) :- ! .
factors_type([f(markov, _, _)|_], markov) :- ! .
get_var_information(_:Key, Domain) :- !,
get_dist_id(f(_, _, _, DistId), DistId).
get_domain(_:Key, Domain) :- !,
skolem(Key, Domain).
get_var_information(Key, Domain) :-
get_domain(Key, Domain) :-
skolem(Key, Domain).

43
packages/CLPBN/clpbn/horus_lifted.yap
View File

@ -17,7 +17,7 @@
:- use_module(horus,
[cpp_create_lifted_network/3,
cpp_set_parfactors_params/2,
cpp_set_parfactors_params/3,
cpp_run_lifted_solver/3,
cpp_free_lifted_network/1
]).
@ -43,22 +43,17 @@ call_horus_lifted_solver(QueryVars, AllVars, Output) :-
init_horus_lifted_solver(_, AllVars, _, state(Network, DistIds)) :-
get_parfactors(Parfactors),
get_dist_ids(Parfactors, DistIds0),
sort(DistIds0, DistIds),
get_observed_keys(AllVars, ObservedKeys),
%writeln(parfactors:Parfactors:'\n'),
%writeln(evidence:ObservedKeys:'\n'),
cpp_create_lifted_network(Parfactors, ObservedKeys, Network).
%writeln(network:(parfactors=Parfactors, evidence=ObservedKeys)), nl,
cpp_create_lifted_network(Parfactors, ObservedKeys, Network),
maplist(get_dist_id, Parfactors, DistIds0),
sort(DistIds0, DistIds).
run_horus_lifted_solver(QueryVars, Solutions, state(Network, DistIds)) :-
maplist(get_query_keys, QueryVars, QueryKeys),
get_dists_parameters(DistIds, DistsParams),
%writeln(distparams1:DistsParams),
%maplist(get_pfl_parameters, DistIds,DistsParams2),
%writeln(distparams1:DistsParams2),
%writeln(dists:DistsParams), writeln(''),
cpp_set_parfactors_params(Network, DistsParams),
%maplist(get_pfl_parameters, DistIds,DistsParams),
%cpp_set_parfactors_params(Network, DistIds, DistsParams),
cpp_run_lifted_solver(Network, QueryKeys, Solutions).
@ -68,13 +63,6 @@ end_horus_lifted_solver(state(Network, _)) :-
%
% Enumerate all parfactors and enumerate their domain as tuples.
%
% output is list of pf(
% Id: an unique number
% Ks: a list of keys, also known as the pf formula [a(X),b(Y),c(X,Y)]
% Vs: the list of free variables [X,Y]
% Phi: the table following usual CLP(BN) convention
% Tuples: ground bindings for variables in Vs, of the form [fv(x,y)]
%
:- table get_parfactors/1.
get_parfactors(Factors) :-
@ -90,8 +78,8 @@ is_factor(pf(Id, Ks, Rs, Phi, Tuples)) :-
get_range(K, Range) :-
skolem(K,Domain),
length(Domain,Range).
skolem(K, Domain),
length(Domain, Range).
gen_table(Table, Phi) :-
@ -108,9 +96,7 @@ run(Goal.Constraints) :-
run(Constraints).
get_dist_ids([], []).
get_dist_ids(pf(Id, _, _, _, _).Parfactors, Id.DistIds) :-
get_dist_ids(Parfactors, DistIds).
get_dist_id(pf(DistId, _, _, _, _), DistId).
get_observed_keys([], []).
@ -118,8 +104,7 @@ get_observed_keys(V.AllAttVars, [K:E|ObservedKeys]) :-
clpbn:get_atts(V,[key(K)]),
( clpbn:get_atts(V,[evidence(E)]) ; pfl:evidence(K,E) ), !,
get_observed_keys(AllAttVars, ObservedKeys).
get_observed_keys(V.AllAttVars, ObservedKeys) :-
clpbn:get_atts(V,[key(_K)]), !,
get_observed_keys(_V.AllAttVars, ObservedKeys) :-
get_observed_keys(AllAttVars, ObservedKeys).
@ -128,9 +113,3 @@ get_query_keys(V.AttVars, K.Ks) :-
clpbn:get_atts(V,[key(K)]), !,
get_query_keys(AttVars, Ks).
get_dists_parameters([], []).
get_dists_parameters([Id|Ids], [dist(Id, Params)|DistsInfo]) :-
get_pfl_parameters(Id, Params),
get_dists_parameters(Ids, DistsInfo).

70
packages/CLPBN/horus/HorusYap.cpp
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@ -233,19 +233,21 @@ setParfactorsParams (void)
{
LiftedNetwork* network = (LiftedNetwork*) YAP_IntOfTerm (YAP_ARG1);
ParfactorList* pfList = network->first;
YAP_Term distList = YAP_ARG2;
YAP_Term distIdsList = YAP_ARG2;
YAP_Term paramsList = YAP_ARG3;
unordered_map<unsigned, Params> paramsMap;
while (distList != YAP_TermNil()) {
YAP_Term dist = YAP_HeadOfTerm (distList);
unsigned distId = (unsigned) YAP_IntOfTerm (YAP_ArgOfTerm (1, dist));
while (distIdsList != YAP_TermNil()) {
unsigned distId = (unsigned) YAP_IntOfTerm (
YAP_HeadOfTerm (distIdsList));
assert (Util::contains (paramsMap, distId) == false);
paramsMap[distId] = readParameters (YAP_ArgOfTerm (2, dist));
distList = YAP_TailOfTerm (distList);
paramsMap[distId] = readParameters (YAP_HeadOfTerm (paramsList));
distIdsList = YAP_TailOfTerm (distIdsList);
paramsList = YAP_TailOfTerm (paramsList);
}
ParfactorList::iterator it = pfList->begin();
while (it != pfList->end()) {
assert (Util::contains (paramsMap, (*it)->distId()));
// (*it)->setParams (paramsMap[(*it)->distId()]);
(*it)->setParams (paramsMap[(*it)->distId()]);
++ it;
}
return TRUE;
@ -256,16 +258,17 @@ setParfactorsParams (void)
int
setFactorsParams (void)
{
return TRUE; // TODO
FactorGraph* fg = (FactorGraph*) YAP_IntOfTerm (YAP_ARG1);
YAP_Term distList = YAP_ARG2;
YAP_Term distIdsList = YAP_ARG2;
YAP_Term paramsList = YAP_ARG3;
unordered_map<unsigned, Params> paramsMap;
while (distList != YAP_TermNil()) {
YAP_Term dist = YAP_HeadOfTerm (distList);
unsigned distId = (unsigned) YAP_IntOfTerm (YAP_ArgOfTerm (1, dist));
while (distIdsList != YAP_TermNil()) {
unsigned distId = (unsigned) YAP_IntOfTerm (
YAP_HeadOfTerm (distIdsList));
assert (Util::contains (paramsMap, distId) == false);
paramsMap[distId] = readParameters (YAP_ArgOfTerm (2, dist));
distList = YAP_TailOfTerm (distList);
paramsMap[distId] = readParameters (YAP_HeadOfTerm (paramsList));
distIdsList = YAP_TailOfTerm (distIdsList);
paramsList = YAP_TailOfTerm (paramsList);
}
const FacNodes& facNodes = fg->facNodes();
for (size_t i = 0; i < facNodes.size(); i++) {
@ -534,15 +537,34 @@ fillAnswersPrologList (vector<Params>& results)
extern "C" void
init_predicates (void)
{
YAP_UserCPredicate ("cpp_create_lifted_network", createLiftedNetwork, 3);
YAP_UserCPredicate ("cpp_create_ground_network", createGroundNetwork, 4);
YAP_UserCPredicate ("cpp_run_lifted_solver", runLiftedSolver, 3);
YAP_UserCPredicate ("cpp_run_ground_solver", runGroundSolver, 3);
YAP_UserCPredicate ("cpp_set_parfactors_params", setParfactorsParams, 2);
YAP_UserCPredicate ("cpp_cpp_set_factors_params", setFactorsParams, 2);
YAP_UserCPredicate ("cpp_set_vars_information", setVarsInformation, 2);
YAP_UserCPredicate ("cpp_set_horus_flag", setHorusFlag, 2);
YAP_UserCPredicate ("cpp_free_lifted_network", freeLiftedNetwork, 1);
YAP_UserCPredicate ("cpp_free_ground_network", freeGroundNetwork, 1);
YAP_UserCPredicate ("cpp_create_lifted_network",
createLiftedNetwork, 3);
YAP_UserCPredicate ("cpp_create_ground_network",
createGroundNetwork, 4);
YAP_UserCPredicate ("cpp_run_lifted_solver",
runLiftedSolver, 3);
YAP_UserCPredicate ("cpp_run_ground_solver",
runGroundSolver, 3);
YAP_UserCPredicate ("cpp_set_parfactors_params",
setParfactorsParams, 3);
YAP_UserCPredicate ("cpp_set_factors_params",
setFactorsParams, 3);
YAP_UserCPredicate ("cpp_set_vars_information",
setVarsInformation, 2);
YAP_UserCPredicate ("cpp_set_horus_flag",
setHorusFlag, 2);
YAP_UserCPredicate ("cpp_free_lifted_network",
freeLiftedNetwork, 1);
YAP_UserCPredicate ("cpp_free_ground_network",
freeGroundNetwork, 1);
}