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efficient variable elimination for lpads. Still buggy

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git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2128 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
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rzf 2008-03-08 11:32:26 +00:00
parent 70749fc27f
commit 2152d90937
1 changed files with 477 additions and 275 deletions
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748
cplint/lpadvel.pl
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@ -13,20 +13,18 @@
:- set_prolog_flag(discontiguous_warnings,on). :- set_prolog_flag(discontiguous_warnings,on).
:- set_prolog_flag(single_var_warnings,on). :- set_prolog_flag(single_var_warnings,on).
:-source. :-source.
:- module(lpadclpbn, [p/1, %:- module(lpadclpbn, [p/1,
s/2,sc/3,s/6,sc/7,set/2,setting/2]). % s/2,sc/3,s/6,sc/7,set/2,setting/2]).
:-dynamic rule/4,def_rule/2,setting/2. :-dynamic rule/5,def_rule/2,setting/2.
:-use_module(library(lists)). :-use_module(library(lists)).
:-use_module(library(ugraphs)). :-use_module(library(ugraphs)).
:-use_module(library(avl)). :-use_module(library(avl)).
:-use_module(library(clpbn)). :-use_module(library(ugraphs)).
:-set_clpbn_flag(suppress_attribute_display,true). :-use_module(library(matrix)).
:-set_clpbn_flag(bnt_model,propositional).
/* start of list of parameters that can be set by the user with /* start of list of parameters that can be set by the user with
@ -47,30 +45,45 @@ setting(cpt_zero,0.0001).
GoalsLis can have variables, s returns in backtracking all the solutions with GoalsLis can have variables, s returns in backtracking all the solutions with
their corresponding probability */ their corresponding probability */
s(GL,P):- s(GL,P):-
setof(Deriv,find_deriv(GL,Deriv),LDup), get_ground_portion(GL,CL),!,
append_all(LDup,[],L), convert_to_bn(CL,GL,[],P).
remove_head(L,L1),
remove_duplicates(L1,L2),
build_ground_lpad(L2,0,CL),
convert_to_clpbn(CL,GL,LV,P).
s(_GL,0.0).
/* sc(GoalsList,EvidenceList,Prob) compute the probability of a list of goals /* sc(GoalsList,EvidenceList,Prob) compute the probability of a list of goals
GoalsList given EvidenceList. Both lists can have variables, sc returns in GoalsList given EvidenceList. Both lists can have variables, sc returns in
backtracking all the solutions with their corresponding probability backtracking all the solutions with their corresponding probability
Time1 is the time for performing resolution Time1 is the time for performing resolution
Time2 is the time for performing bayesian inference */ Time2 is the time for performing bayesian inference */
sc(GL,GLC,P):- sc(GL,GLC,P):-
setof(Deriv,find_deriv(GL,Deriv),LDup), get_ground_portion(GL,GLC,CL,Undef),!,
setof(Deriv,find_deriv(GLC,Deriv),LDupC), (Undef=yes->
append_all(LDup,[],L), P=undef
remove_head(L,L1), ;
append_all(LDupC,[],LC), convert_to_bn(CL,GL,GLC,P)
remove_head(LC,LC1), ).
append(L1,LC1,LD),
remove_duplicates(LD,LD1),
build_ground_lpad(LD1,0,CL),
convert_to_clpbn(CL,GL,LV,P,GLC).
sc(_GL,_GLC,0.0).
get_ground_portion(GL,CL):-
setof(Deriv,find_deriv(GL,Deriv),LDup),
append_all(LDup,[],L),
remove_head(L,LD),
remove_duplicates(LD,LD1),
build_ground_lpad(LD1,0,CL).
get_ground_portion(GL,GLC,CL,Undef):-
setof(Deriv,find_deriv(GL,Deriv),LDup),
(setof(Deriv,find_deriv(GLC,Deriv),LDupC)->
append_all(LDup,[],L),
remove_head(L,L1),
append_all(LDupC,[],LC),
remove_head(LC,LC1),
append(L1,LC1,LD),
remove_duplicates(LD,LD1),
build_ground_lpad(LD1,0,CL)
;
Undef=yes
).
/* s(GoalsList,Prob,Time1,Time2) compute the probability of a list of goals /* s(GoalsList,Prob,Time1,Time2) compute the probability of a list of goals
@ -78,23 +91,28 @@ GoalsLis can have variables, s returns in backtracking all the solutions with
their corresponding probability their corresponding probability
Time1 is the time for performing resolution Time1 is the time for performing resolution
Time2 is the time for performing bayesian inference */ Time2 is the time for performing bayesian inference */
s(GL,P,Time1,Time2):- s(GL,P,CPUTime1,CPUTime2,WallTime1,WallTime2):-
statistics(cputime,[_,_]), statistics(cputime,[_,_]),
statistics(walltime,[_,_]), statistics(walltime,[_,_]),
setof(Deriv,find_deriv(GL,Deriv),LDup), (get_ground_portion(GL,CL)->
append_all(LDup,[],L), statistics(cputime,[_,CT1]),
remove_head(L,L1), CPUTime1 is CT1/1000,
remove_duplicates(L1,L2), statistics(walltime,[_,WT1]),
statistics(cputime,[_,CT1]), WallTime1 is WT1/1000,
CPUTime1 is CT1/1000, convert_to_bn(CL,GL,[],P),
statistics(walltime,[_,WT1]), statistics(cputime,[_,CT2]),
WallTime1 is WT1/1000, CPUTime2 is CT2/1000,
build_ground_lpad(L2,0,CL), statistics(walltime,[_,WT2]),
convert_to_clpbn(CL,GL,LV,P), WallTime2 is WT2/1000
statistics(cputime,[_,CT2]), ;
CPUTime2 is CT2/1000, statistics(cputime,[_,CT1]),
statistics(walltime,[_,WT2]), CPUTime1 is CT1/1000,
WallTime2 is WT2/1000. statistics(walltime,[_,WT1]),
WallTime1 is WT1/1000,
CPUTime2=0.0,
WallTime2=0.0,
P=0.0
).
/* sc(GoalsList,EvidenceList,Prob) compute the probability of a list of goals /* sc(GoalsList,EvidenceList,Prob) compute the probability of a list of goals
GoalsList given EvidenceList. Both lists can have variables, sc returns in GoalsList given EvidenceList. Both lists can have variables, sc returns in
@ -103,25 +121,31 @@ backtracking all the solutions with their corresponding probability */
sc(GL,GLC,P,CPUTime1,CPUTime2,WallTime1,WallTime2):- sc(GL,GLC,P,CPUTime1,CPUTime2,WallTime1,WallTime2):-
statistics(cputime,[_,_]), statistics(cputime,[_,_]),
statistics(walltime,[_,_]), statistics(walltime,[_,_]),
setof(Deriv,find_deriv(GL,Deriv),LDup), (get_ground_portion(GL,GLC,CL,Undef)->
setof(Deriv,find_deriv(GLC,Deriv),LDupC), statistics(cputime,[_,CT1]),
append_all(LDup,[],L), CPUTime1 is CT1/1000,
remove_head(L,L1), statistics(walltime,[_,WT1]),
append_all(LDupC,[],LC), WallTime1 is WT1/1000,
remove_head(LC,LC1), (Undef=yes->
append(L1,LC1,LD), P=undef
remove_duplicates(LD,LD1), CPUTime2=0.0,
statistics(cputime,[_,CT1]), WallTime2=0.0
CPUTime1 is CT1/1000, ;
statistics(walltime,[_,WT1]), convert_to_bn(CL,GL,GLC,P),
WallTime1 is WT1/1000, statistics(cputime,[_,CT2]),
build_ground_lpad(LD1,0,CL), CPUTime2 is CT2/1000,
convert_to_bn(CL,GL,GLC,P), statistics(walltime,[_,WT2]),
statistics(cputime,[_,CT2]), WallTime2 is WT2/1000
CPUTime2 is CT2/1000, )
statistics(walltime,[_,WT2]), ;
WallTime2 is WT2/1000. statistics(cputime,[_,CT1]),
CPUTime1 is CT1/1000,
statistics(walltime,[_,WT1]),
WallTime1 is WT1/1000,
CPUTime2=0.0,
WallTime2=0.0,
P=0.0
).
remove_head([],[]). remove_head([],[]).
@ -143,52 +167,139 @@ process_goals([H|T],[HG|TG],[HV|TV]):-
build_ground_lpad([],_N,[]). build_ground_lpad([],_N,[]).
build_ground_lpad([(R,S)|T],N,[(N1,Head,Body)|T1]):- build_ground_lpad([(R,S)|T],N,[(N1,Head1,Body1)|T1]):-
rule(R,S,_,Head,Body), rule(R,S,_,Head,Body),
N1 is N+1, N1 is N+1,
merge_identical(Head,Head1),
remove_built_ins(Body,Body1),
build_ground_lpad(T,N1,T1). build_ground_lpad(T,N1,T1).
remove_built_ins([],[]):-!.
remove_built_ins([\+H|T],T1):-
builtin(H),!,
remove_built_ins(T,T1).
remove_built_ins([H|T],T1):-
builtin(H),!,
remove_built_ins(T,T1).
remove_built_ins([H|T],[H|T1]):-
remove_built_ins(T,T1).
merge_identical([],[]):-!.
merge_identical([A:P|T],[A:P1|Head]):-
find_identical(A,P,T,P1,T1),
merge_identical(T1,Head).
find_identical(_A,P,[],P,[]):-!.
find_identical(A,P0,[A:P|T],P1,T1):-!,
P2 is P0+P,
find_identical(A,P2,T,P1,T1).
find_identical(A,P0,[H:P|T],P1,[H:P|T1]):-
find_identical(A,P0,T,P1,T1).
convert_to_bn(CL,GL,GLC,P):- convert_to_bn(CL,GL,GLC,P):-
find_ground_atoms(CL,[],GADup), find_ground_atoms(CL,[],GADup),
remove_duplicates(GADup,GANull), remove_duplicates(GADup,GANull),
delete(GANull,'',GA), delete(GANull,'',GA),
rule_factors(CL,[],RF), rule_factors(CL,[],HetF,HomFR,[],Graph0),
identity_facotrs(GA,GAD,IF), identity_facotrs(GA,_GAD,IF,Graph0,Graph1),
get_order(CL,GA,Order), top_sort(Graph1,SortedAtoms),
append(GA,GAD,Atoms),
sort_atoms(Atoms,Order,SortedAtoms),
find_atoms_body(GLC,EvAtoms),
find_atoms_body(GL,QAtoms), find_atoms_body(GL,QAtoms),
vel(IF,RF,QAtoms,EvAtoms,GLC,SortedAtoms,OutptuTable), append(HomFR,IF,HomF),
get_prob_goal(GL,QAtoms,OutptuTable,P). vel(HomF,HetF,QAtoms,GLC,SortedAtoms,OutptutTable),
get_prob_goal(GL,QAtoms,SortedAtoms,OutptutTable,P).
get_prob_goal(GL,QAtoms,SortedAtoms,f(M,_D,_S),P):-
positions(QAtoms,SortedAtoms,VarsPos),
keysort(VarsPos,Vars1Pos),
split_map(Vars1Pos,Vars1),
get_index(Vars1,GL,Index),
matrix_to_list(M,_),
matrix_get(M,Index,P).
get_index([],_GL,[]):-!.
get_index([H|Vars1],GL,[1|Index]):-
member(H,GL),!,
get_index(Vars1,GL,Index).
get_index([H|Vars1],GL,[0|Index]):-
member(\+H,GL),
get_index(Vars1,GL,Index).
vel(IF,RF,QAtoms,EvAtoms,GLC,SortedAtoms,OutptuTable):- vel(IF,RF,QAtoms,GLC,SortedAtoms,OutptutTable):-
fix_evidence(GLC,RF,RF1), fix_evidence(RF,RF1,GLC),
fix_evidence(GLC,IF,IF1), fix_evidence(IF,IF1,GLC),
sort_tables(RF1,RF2,SortedAtoms), sort_tables(RF1,RF2,SortedAtoms),
sort_tables(IF1,IF2,SortedAtoms), sort_tables(IF1,IF2,SortedAtoms),
delete_all(QAtoms,SortedAtoms,SortedAtoms1), delete_all(QAtoms,SortedAtoms,SortedAtoms1),
vel_cycle(IF,RF,SortedAtoms1,OutptuTable). vel_cycle(SortedAtoms1,IF2,RF2,SortedAtoms,OutptutTable).
fix_evidence([],[],_Ev):-!.
fix_evidence([f(Tab,Dep,Sz)|T],[f(Tab1,Dep1,Sz1)|T1],Ev):-
add_conv(Ev,Ev1),
simplify_evidence(Ev1,Tab,Dep,Sz,Tab1,Dep1,Sz1),
fix_evidence(T,T1,Ev).
add_conv([],[]):-!.
add_conv([\+H|Ev],[\+H,\+d(H)|Ev1]):-!,
add_conv(Ev,Ev1).
add_conv([H|Ev],[H,d(H)|Ev1]):-!,
add_conv(Ev,Ev1).
simplify_evidence([], Table, Deps, Sizes, Table, Deps, Sizes).
simplify_evidence([V|VDeps], Table0, Deps0, Sizes0, Table, Deps, Sizes) :-!,
project_from_CPT(V,tab(Table0,Deps0,Sizes0),tab(Table1,Deps1,Sizes1)),
matrix_to_list(Table1,_),
simplify_evidence(VDeps, Table1, Deps1, Sizes1, Table, Deps, Sizes).
project_from_CPT(\+H,tab(Table,Deps,_),tab(NewTable,NDeps,NSzs)) :-
nth0(N,Deps, H),!,
matrix_to_list(Table,_),
matrix_select(Table, N, 0, NewTable),
matrix_to_list(NewTable,_),
matrix_dims(NewTable, NSzs),
delete(Deps,H,NDeps).
project_from_CPT(H,tab(Table,Deps,_),tab(NewTable,NDeps,NSzs)) :-
nth0(N,Deps, H),!,
matrix_to_list(Table,_),
matrix_select(Table, N, 1, NewTable),
matrix_to_list(NewTable,_),
matrix_dims(NewTable, NSzs),
delete(Deps,H,NDeps).
project_from_CPT(_H,tab(Table,Deps,S),tab(Table,Deps,S)).
sort_tables([],[],_SortedAtoms):-!. sort_tables([],[],_SortedAtoms):-!.
sort_tables([f(Mat,Vars)|T],[f(Mat1,Vars1)|T1],SortedAtoms):- sort_tables([f(Mat,Vars,_Sz)|T],[f(Mat1,Vars1,Sz1)|T1],SortedAtoms):-
reorder_CPT(Mat,Vars,Ma) reorder_CPT(Vars,SortedAtoms,Vars1,Map),
matrix_shuffle(T0,Map,TF) matrix_shuffle(Mat,Map,Mat1),
matrix_dims(Mat1,Sz1),
matrix_to_list(Mat,_L),
matrix_to_list(Mat1,_L1),
sort_tables(T,T1,SortedAtoms). sort_tables(T,T1,SortedAtoms).
order_vec(Vs0,Vs,Map) :-
add_indices(Vs0,0,Is),
keysort(Is,NIs),
get_els(NIs, Vs, Map).
add_indices([],_,[]). delete_all([],L,L):-!.
add_indices([V|Vs0],I0,[V-I0|Is]) :-
I is I0+1,
add_indices(Vs0,I,Is).
delete_all([H|T],L0,L1):-
delete(L0,H,L2),
delete_all(T,L2,L1).
mapping(Vs0,Vs,Map) :- mapping(Vs0,Vs,Map) :-
add_indices(Vs0,0,I1s), add_indices(Vs0,0,I1s),
@ -205,103 +316,251 @@ split_map([], []).
split_map([_-M|Is], [M|Map]) :- split_map([_-M|Is], [M|Map]) :-
split_map(Is, Map). split_map(Is, Map).
split_pos([], []).
split_pos([V-_|Is], [V|Map]) :-
split_pos(Is, Map).
positions([],_SA,[]):-!.
positions([HV|Vars],SortedAtoms,[Pos-HV|VarsPos]):-
nth(Pos,SortedAtoms,HV),!,
positions(Vars,SortedAtoms,VarsPos).
reorder_CPT(Vs0,T0,Vs,TF,Sizes) :- reorder_CPT(Vars,SortedAtoms,Vars1,Map):-
mapping(Vs0,Vs,Map), positions(Vars,SortedAtoms,VarsPos),
( keysort(VarsPos,Vars1Pos),
Vs == Vs0 split_map(Vars1Pos,Vars1),
-> mapping(Vars,Vars1,Map).
TF = T0
;
matrix_shuffle(T0,Map,TF)
),
matrix_dims(TF, Sizes).
order_vec(Vs0,Vs,Map) :-
add_indices(Vs0,0,Is),
keysort(Is,NIs),
get_els(NIs, Vs, Map).
add_indices([],_,[]). add_indices([],_,[]).
add_indices([V|Vs0],I0,[V-I0|Is]) :- add_indices([V|Vs0],I0,[V-I0|Is]) :-
I is I0+1, I is I0+1,
add_indices(Vs0,I,Is). add_indices(Vs0,I,Is).
vel_cycle(HomFact,HetFact,[],OutputTable):-!, vel_cycle([],HomFact,HetFact,SortedAtoms,f(Mat1,Dep,Sz)):-!,
combine_factors(HomFact,HetFact,Function), combine_factors(HomFact,HetFact,SortedAtoms,f(Mat,Dep,Sz)),
normalize(Function,OutputTable). normalise_CPT(Mat,Mat1),
matrix_to_list(Mat1,_).
vel_cycle(HomFact,HetFact,[Z|TVar],OutputTable):- vel_cycle([Z|TVar],HomFact,HetFact,SortedAtoms,OutputTable):-
sum_out1(HomFact,HetFact,Z,HomFact1,HetFact1), sum_out1(Z,HomFact,HetFact,HomFact1,HetFact1,SortedAtoms),
vel_cycle(HomFact,HetFact,TVar,OutputTable). vel_cycle(TVar,HomFact1,HetFact1,SortedAtoms,OutputTable).
sum_out1(Hom,Het,Var,Hom2,Het2):- normalise_CPT(MAT,NMAT) :-
matrix_sum(MAT, Sum),
matrix_op_to_all(MAT,/,Sum,NMAT).
combine_factors(HomFacts,HetFacts,SortedAtoms,Fact):-
combine_tables(HetFacts,HetFact,SortedAtoms),
multiply_tables([HetFact|HomFacts],Fact,SortedAtoms).
sum_out1(Var,Hom,Het,Hom2,Het2,SortedAtoms):-
get_factors_with_var(Hom,Var,HomFacts,Hom1), get_factors_with_var(Hom,Var,HomFacts,Hom1),
multiply_tables(HomFacts,HomFact), multiply_tables(HomFacts,HomFact,SortedAtoms),
(HomFact=[];HomFact=f(Mat1,_,_),
matrix_to_list(Mat1,_)),
get_factors_with_var(Het,Var,HetFacts,Het1), get_factors_with_var(Het,Var,HetFacts,Het1),
combine(HetFacts,HetFact), combine_tables(HetFacts,HetFact,SortedAtoms),
update_factors(HomFact,HetFact,Var,Hom1,Hom2,Het1,Het2). (HetFact=[];HetFact=f(Mat2,_,_),
matrix_to_list(Mat2,_)),
update_factors(HomFact,HetFact,Var,Hom1,Hom2,Het1,Het2,SortedAtoms).
get_factors_with_var([],_V,[],[]):-1 update_factors([],[],_Var,Hom,Hom,Het,Het,_SortedAtoms):-!.
get_factors_with_var([f(Table,Vars)|T],Var,[f(Table,Vars)|TFV],TRest):- update_factors(HomFact,[],Var,Hom,[Fact|Hom],Het,Het,_SortedAtoms):-!,
sum_var(Var,HomFact,Fact),
Fact=f(Mat2,_,_),
matrix_to_list(Mat2,_).
update_factors([],HetFact,Var,Hom,Hom,Het,[Fact|Het],_SortedAtoms):-
sum_var(Var,HetFact,Fact),
Fact=f(Mat2,_,_),
matrix_to_list(Mat2,_).
update_factors(HomFact,HetFact,Var,Hom,Hom,Het,[Fact1|Het],SortedAtoms):-
multiply_CPTs(HomFact,HetFact,Fact,SortedAtoms),
Fact=f(Mat,_,_),
matrix_to_list(Mat,_),
sum_var(Var,Fact,Fact1),
Fact1=f(Mat2,_,_),
matrix_to_list(Mat2,_).
sum_var(Var,f(Table,Deps,_),f(NewTable,NDeps,NSzs)):-
nth0(N,Deps, Var),!,
delete(Deps,Var,NDeps),
matrix_sum_out(Table, N, NewTable),
matrix_dims(NewTable, NSzs).
combine_tables([],[],_SortedAtoms):-!.
combine_tables([Fact],Fact,_SortedAtoms):-!.
combine_tables([Fact1,Fact2|T],Fact,SortedAtoms):-
combine_CPTs(Fact1,Fact2,Fact0,SortedAtoms),
combine_tables([Fact0|T],Fact,SortedAtoms).
get_factors_with_var([],_V,[],[]):-!.
get_factors_with_var([f(Table,Vars,Sz)|T],Var,[f(Table,Vars,Sz)|TFV],TRest):-
member(Var,Vars),!, member(Var,Vars),!,
get_factors_with_var(T,Var,TFV,TRest). get_factors_with_var(T,Var,TFV,TRest).
get_factors_with_var([f(Table,Vars)|T],Var,TFV,[f(Table,Vars)|TRest]):- get_factors_with_var([f(Table,Vars,Sz)|T],Var,TFV,[f(Table,Vars,Sz)|TRest]):-
get_factors_with_var(T,Var,TFV,TRest). get_factors_with_var(T,Var,TFV,TRest).
multiply_tables([Table], Table) :- !. multiply_tables([], [],_SorteAtoms) :- !.
multiply_tables(TAB1, TAB2| Tables], Out) :-
multiply_CPTs(TAB1, TAB2, TAB, _),
multiply_tables([TAB| Tables], Out).
multiply_CPTs(f(Tab1, Deps1, Sz1), f(Tab2, Deps2, Sz2), f(OT, NDeps, NSz), NTab2) :- multiply_tables([Table], Table,_SorteAtoms) :- !.
expand_tabs(Deps1, Sz1, Deps2, Sz2, Map1, Map2, NDeps), multiply_tables([TAB1, TAB2| Tables], Out,SorteAtoms) :-
multiply_CPTs(TAB1, TAB2, TAB,SorteAtoms),
multiply_tables([TAB| Tables], Out,SorteAtoms).
combine_CPTs(f(Tab1, Deps1, Sz1), f(Tab2, Deps2, Sz2), F, SortedAtoms) :-
get_common_conv(Deps1,Deps2,CommConv),
rename_convergent(1,CommConv,Deps1,Deps11,[],NewAt0),
rename_convergent(2,CommConv,Deps2,Deps21,NewAt0,NewAt1),
update_sorted(SortedAtoms,NewAt1,SortedAtoms1),
expand_tabs(Deps11, Sz1, Deps21, Sz2, Map1, Map2, NDeps0,SortedAtoms1),
matrix_expand(Tab1, Map1, NTab1), matrix_expand(Tab1, Map1, NTab1),
matrix_to_list(NTab1,_),
matrix_expand(Tab2, Map2, NTab2), matrix_expand(Tab2, Map2, NTab2),
matrix_to_list(NTab2,_),
matrix_op(NTab1,NTab2,*,OT0),
matrix_to_list(OT0,_),
matrix_dims(OT0,NSz0),
sum_fact(CommConv,OT0,NDeps0,NSz0,OT,NDeps,NSz),
matrix_to_list(OT,_),
sort_tables([f(OT, NDeps, NSz)],[F],SortedAtoms).
get_common_conv(Deps1,Deps2,CommConv):-
get_conv(Deps1,C1),
get_conv(Deps2,C2),
intersection(C1,C2,CommConv).
get_conv([],[]):-!.
get_conv([d(H)|T],[H|T1]):-!,
get_conv(T,T1).
get_conv([_H|T],T1):-!,
get_conv(T,T1).
sum_fact([],T,D,S,T,D,S):-!.
% remove_renamed_conv(D0,D1).
sum_fact([H|T],T0,D0,S0,T1,D1,S1):-
simplify_evidence([\+d(H,1),\+d(H,2)],T0,D0,S0,Tff,D,S),
simplify_evidence([\+d(H,1),d(H,2)],T0,D0,S0,Tft,D,S),
simplify_evidence([d(H,1),\+d(H,2)],T0,D0,S0,Ttf,D,S),
simplify_evidence([d(H,1),d(H,2)],T0,D0,S0,Ttt,D,S),
matrix_op(Tft,Ttf,+,T2),
matrix_op(T2,Ttt,+,T3),
matrix_to_list(T3,Lt),
matrix_to_list(Tff,Lf),
append(Lf,Lt,L),
matrix_new(floats, [2|S], L,T4),
matrix_to_list(T2,_),
sum_fact(T,T4,[d(H)|D],[2|S],T1,D1,S1),
matrix_to_list(T1,_).
remove_renamed_conv([],[]):-!.
remove_renamed_conv([d(H,_N)|D0],[d(H)|D1]):-!,
remove_renamed_conv(D0,D1).
remove_renamed_conv([H|D0],[H|D1]):-
remove_renamed_conv(D0,D1).
update_sorted([],_NewAt,[]):-!.
update_sorted([d(H)|T],NewAt,[d(H,1)|T1]):-
member(d(H,1),NewAt),!,
update_sorted1(H,T,NewAt,T1).
update_sorted([d(H)|T],NewAt,[d(H,2)|T1]):-
member(d(H,2),NewAt),!,
update_sorted(T,NewAt,T1).
update_sorted([H|T],NewAt,[H|T1]):-
update_sorted(T,NewAt,T1).
update_sorted1(H,T,NewAt,[d(H,2)|T1]):-
member(d(H,2),NewAt),!,
update_sorted(T,NewAt,T1).
update_sorted1(_H,T,NewAt,T1):-
update_sorted(T,NewAt,T1).
rename_convergent(_N,_CommConv,[],[],NA,NA):-!.
rename_convergent(N,CommConv,[d(H)|T],[d(H,N)|T1],NA0,[d(H,N)|NA1]):-
member(H,CommConv),!,
rename_convergent(N,CommConv,T,T1,NA0,NA1).
rename_convergent(N,CommConv,[H|T],[H|T1],NA0,NA1):-
rename_convergent(N,CommConv,T,T1,NA0,NA1).
multiply_CPTs(f(Tab1, Deps1, Sz1), f(Tab2, Deps2, Sz2), f(OT, NDeps, NSz), SortedAtoms) :-
expand_tabs(Deps1, Sz1, Deps2, Sz2, Map1, Map2, NDeps,SortedAtoms),
matrix_expand(Tab1, Map1, NTab1),
matrix_to_list(NTab1,_),
matrix_expand(Tab2, Map2, NTab2),
matrix_to_list(NTab2,_),
matrix_op(NTab1,NTab2,*,OT), matrix_op(NTab1,NTab2,*,OT),
matrix_to_list(OT,_),
matrix_dims(OT,NSz). matrix_dims(OT,NSz).
expand_tabs([], [], [], [], [], [], []). expand_tabs([], [], [], [], [], [], [],_SortedAtoms):-!.
expand_tabs([V1|Deps1], [S1|Sz1], [], [], [0|Map1], [S1|Map2], [V1|NDeps]) :- expand_tabs([V1|Deps1], [S1|Sz1], [], [], [0|Map1], [S1|Map2], [V1|NDeps],SortedAtoms) :-!,
expand_tabs(Deps1, Sz1, [], [], Map1, Map2, NDeps). expand_tabs(Deps1, Sz1, [], [], Map1, Map2, NDeps,SortedAtoms).
expand_tabs([], [], [V2|Deps2], [S2|Sz2], [S2|Map1], [0|Map2], [V2|NDeps]) :- expand_tabs([], [], [V2|Deps2], [S2|Sz2], [S2|Map1], [0|Map2], [V2|NDeps],SortedAtoms) :-!,
expand_tabs([], [], Deps2, Sz2, Map1, Map2, NDeps). expand_tabs([], [], Deps2, Sz2, Map1, Map2, NDeps,SortedAtoms).
expand_tabs([V1|Deps1], [S1|Sz1], [V2|Deps2], [S2|Sz2], Map1, Map2, NDeps) :- expand_tabs([V1|Deps1], [S1|Sz1], [V2|Deps2], [S2|Sz2], Map1, Map2, NDeps,SortedAtoms) :-
compare(C,V1,V2), compare_var(C,V1,V2,SortedAtoms),
(C == = -> (C == = ->
NDeps = [V1|MDeps], NDeps = [V1|MDeps],
Map1 = [0|M1], Map1 = [0|M1],
Map2 = [0|M2], Map2 = [0|M2],
NDeps = [V1|MDeps], NDeps = [V1|MDeps],
expand_tabs(Deps1, Sz1, Deps2, Sz2, M1, M2, MDeps) expand_tabs(Deps1, Sz1, Deps2, Sz2, M1, M2, MDeps,SortedAtoms)
; ;
C == < -> C == < ->
NDeps = [V1|MDeps], NDeps = [V1|MDeps],
Map1 = [0|M1], Map1 = [0|M1],
Map2 = [S1|M2], Map2 = [S1|M2],
NDeps = [V1|MDeps], NDeps = [V1|MDeps],
expand_tabs(Deps1, Sz1, [V2|Deps2], [S2|Sz2], M1, M2, MDeps) expand_tabs(Deps1, Sz1, [V2|Deps2], [S2|Sz2], M1, M2, MDeps,SortedAtoms)
; ;
NDeps = [V2|MDeps], NDeps = [V2|MDeps],
Map1 = [S2|M1], Map1 = [S2|M1],
Map2 = [0|M2], Map2 = [0|M2],
NDeps = [V2|MDeps], NDeps = [V2|MDeps],
expand_tabs([V1|Deps1], [S1|Sz1], Deps2, Sz2, M1, M2, MDeps) expand_tabs([V1|Deps1], [S1|Sz1], Deps2, Sz2, M1, M2, MDeps,SortedAtoms)
). ).
compare_var(C,V1,V2,SortedAtoms):-
nth(N1,SortedAtoms,V1),
nth(N2,SortedAtoms,V2),!,
compare(C,N1,N2).
deputy_atoms([],[]):-!. deputy_atoms([],[]):-!.
deputy_atoms([H|T],[d(H)|T1]):- deputy_atoms([H|T],[d(H)|T1]):-
deputy_atoms(T,T1). deputy_atoms(T,T1).
identity_facotrs([],[],[]):-!. identity_facotrs([],[],[],Graph,Graph):-!.
identity_facotrs([H|T],[d(H)|TD],[f([1.0,0.0,0.0,1.0],[H,d(H)])|TF]):- identity_facotrs([H|T],[d(H)|TD],[f(Mat,[d(H),H],[2,2])|TF],Graph0,Graph1):-
identity_facotrs(T,TD,IF). add_edges(Graph0,[d(H)-H],Graph2),
matrix_new(floats, [2,2], [1.0,0.0,0.0,1.0],Mat),
identity_facotrs(T,TD,TF,Graph2,Graph1).
@ -318,164 +577,94 @@ add_ev([H|T],AV):-
clpbn:put_atts(V,evidence(1)), clpbn:put_atts(V,evidence(1)),
add_ev(T,AV). add_ev(T,AV).
convert_to_bn(CL,GL,LV,P):-
find_ground_atoms(CL,[],GAD),
remove_duplicates(GAD,GANull),
delete(GANull,'',GA),
atom_vars(GA,[],AV,AVL),
choice_vars(CL,[],CV,CVL),
add_rule_tables(CL,CVL,AV),
add_atoms_tables(AVL,GA,CL,CV,AV),
get_prob(GL,AV,AVL,CVL,P).
get_prob(GL,AV,AVL,CVL,P):-
build_table_conj(GL,Table),
find_atoms_body(GL,Atoms),
lookup_gvars(GL,AV,Parents,[],_Signs),
{G=goal with p([f,t],Table, Parents)},
append(AVL,CVL,Vars),
append(Vars,[G],Vars1),
clpbn:call_solver([G], Vars1),
clpbn_display:get_atts(G, [posterior(Vs,Vals,[_P0,P],AllDiffs)]).
lookup_gvars([],_AV,[],S,S).
lookup_gvars([\+ H|T],AV,[HV|T1],Sign0,Sign2):- !,
avl_lookup(H,HV,AV),
clpbn:get_atts(HV, [key(K)]),
avl_insert(K,f,Sign0,Sign1),
lookup_gvars(T,AV,T1,Sign1,Sign2).
lookup_gvars([H|T],AV,[HV|T1],Sign0,Sign2):-
avl_lookup(H,HV,AV),
clpbn:get_atts(HV, [key(K)]),
avl_insert(K,t,Sign0,Sign1),
lookup_gvars(T,AV,T1,Sign1,Sign2).
add_atoms_tables([],[],_CL,_CV,_AV).
add_atoms_tables([H|T],[HA|TA],CL,CV,AV):-
find_rules_with_atom(HA,CL,R),
parents(R,CV,Par),
build_table_atoms(HA,R,Table),
{H = HA with p([f,t],Table,Par)},
add_atoms_tables(T,TA,CL,CV,AV).
build_table_conj(R,Table):-
build_col_conj(R,t,f,[],Row1),
build_col_conj(R,t,t,Row1,Table).
build_col_conj([],Tr,Final,Row0,Row1):-
(Tr=Final->
append(Row0,[1.0],Row1)
;
setting(cpt_zero,Zero),
append(Row0,[Zero],Row1)
).
build_col_conj([\+H|RP],Tr,Final,Row0,Row2):-!,
build_col_conj(RP,Tr,Final,Row0,Row1),
build_col_conj(RP,f,Final,Row1,Row2).
build_col_conj([H|RP],Tr,Final,Row0,Row2):-
build_col_conj(RP,f,Final,Row0,Row1),
build_col_conj(RP,Tr,Final,Row1,Row2).
build_table_atoms(H,R,Table):-
build_col(H,R,f,f,[],Row1),
build_col(H,R,t,f,Row1,Table).
build_col(A,[],Tr,Found,Row0,Row1):-
(Tr=Found->
append(Row0,[1.0],Row1)
;
setting(cpt_zero,Zero),
append(Row0,[Zero],Row1)
).
build_col(A,[(N,H)|RP],Tr,Found,Row0,Row1):-
build_col_cycle(A,H,RP,Tr,Found,Row0,Row1).
build_col_cycle(_A,[],_RP,_Tr,_Found,Row,Row).
build_col_cycle(A,[A:P|T],RP,Tr,Found,Row0,Row2):-!,
build_col(A,RP,Tr,t,Row0,Row1),
build_col_cycle(A,T,RP,Tr,Found,Row1,Row2).
build_col_cycle(A,[_|T],RP,Tr,Found,Row0,Row2):-
build_col(A,RP,Tr,Found,Row0,Row1),
build_col_cycle(A,T,RP,Tr,Found,Row1,Row2).
parents([],_CV,[]).
parents([(N,_H)|T],CV,[V|T1]):-
avl_lookup(N,V,CV),
parents(T,CV,T1).
find_rules_with_atom(_A,[],[]). find_rules_with_atom(_A,[],[]).
find_rules_with_atom(A,[(N,Head,Body)|T],[(N,Head)|R]):- find_rules_with_atom(A,[(N,Head,_Body)|T],[(N,Head)|R]):-
member(A:P,Head),!, member(A:_P,Head),!,
find_rules_with_atom(A,T,R). find_rules_with_atom(A,T,R).
find_rules_with_atom(A,[_H|T],R):- find_rules_with_atom(A,[_H|T],R):-
find_rules_with_atom(A,T,R). find_rules_with_atom(A,T,R).
rule_factors([],HetF,HetF,[],Graph,Graph):-!.
rule_factors([],RF,RF):-. rule_factors([(N,Head,Body)|T],HetF0,HetF1,[f(Mat,Deps,Sizes)|HomF],Graph0,Graph1):-
rule_factors([(N,Head,Body)|T],RF0,RF1):-
find_atoms_head(Head,Atoms,Probs), find_atoms_head(Head,Atoms,Probs),
gen_rule_table(PT,PF,Body,Table),
find_atoms_body(Body,BodyAtoms),
length(Body,LB), length(Body,LB),
LB1 is LB+1, list2(0,LB,Sizes0),
list2(0,LB1,Sizes), length(Head,LH),
gen_factors(Atoms,Probs,PT,PF,Table,Sizes,BodyAtoms,RF0,RF2), LH1 is LH-1,
rule_factors(T,RF2,RF1). list0(0,LH1,FalseCol0),
append(FalseCol0,[1.0],FalseCol),
gen_rule_table(PT,PF,Body,Table):- build_table(Probs,FalseCol,Body,Table),
build_col_rule(Body,PT,PF,t,f,[],Row1), append(Sizes0,[LH],Sizes),
build_col_rule(Body,PT,PF,t,t,Row1,Table). matrix_new(floats,Sizes,Table,Mat),
find_atoms_body(Body,BodyAtoms),
build_col_rule([],PT,PF,Tr,Final,Row0,Row1):-!, append(BodyAtoms,[ch(N)],Deps),
(Tr=Final-> gen_het_factors(Atoms,N,LH,0,HetF0,HetF2),
update_row_true_body(PT,PF,Tr,Row0,Row1) add_hom_edges_to_graph(BodyAtoms,N,Graph0,Graph2),
; add_het_edges_to_graph(Atoms,N,Graph2,Graph3),
update_row_false_body(Final,Row0,Row1) rule_factors(T,HetF2,HetF1,HomF,Graph3,Graph1).
).
build_col_rule([\+H|RP],PT,PF,Tr,Final,Row0,Row2):-!,
build_col_rule(RP,PT,PF,Tr,Final,Row0,Row1),
build_col_rule(RP,PT,PF,f,Final,Row1,Row2).
build_col_rule([H|RP],PT,PF,Tr,Final,Row0,Row2):-
build_col_rule(RP,PT,PF,f,Final,Row0,Row1),
build_col_rule(RP,PT,PF,Tr,Final,Row1,Row2).
update_row_true_body(PT,_PF,t,Row0,Row1):-!,
append(Row0,[PT],Row1).
update_row_true_body(_PT,PF,f,Row0,Row1):-
append(Row0,[PF],Row1).
update_row_false_body(t,Row0,Row1):-!,
setting(cpt_zero,Zero),
append(Row0,[Zero],Row1).
update_row_false_body(f,Row0,Row1):-
append(Row0,[1.0],Row1).
gen_factors([],[],_PT,_PF,_Table,-Sizes,,_BodyAtoms,RF,RF):-!. build_table(Probs,FalseCol,Body,T):-!,
build_col(Body,t,Probs,FalseCol,[],T).
gen_factors([HA|TA],[HP|TP],PT,PF,Table,Sizes,BodyAtoms,RF0,[f(Mat,[d(HA)|BodyAtoms])[RF1):- build_col([],t,Probs,_FalseCol,T0,T1):-!,
copy_term((PT,PF,Table),{PT1,PF1,Table1)), append(T0,Probs,T1).
PT1 = HP,
PF1 is 1.0-HP,
matrix_new(floats, Sizes, Table1, Mat),
gen_factors(TA,TP,PT,PF,Table,Sizes,BodyAtoms,RF0,RF1).
build_col([],f,_Probs,FalseCol,T0,T1):-!,
append(T0,FalseCol,T1).
build_col([\+ _H|T],Truth,Probs,FalseCol,T0,T1):-!,
build_col(T,Truth,Probs,FalseCol,T0,T2),
build_col(T,f,Probs,FalseCol,T2,T1).
build_col([_H|T],Truth,Probs,FalseCol,T0,T1):-
build_col(T,f,Probs,FalseCol,T0,T2),
build_col(T,Truth,Probs,FalseCol,T2,T1).
add_hom_edges_to_graph([],_N,Graph,Graph):-!.
add_hom_edges_to_graph([H|T],N,Graph0,Graph1):-
add_edges(Graph0,[H-ch(N)],Graph2),
add_hom_edges_to_graph(T,N,Graph2,Graph1).
add_het_edges_to_graph([''],_N,Graph,Graph):-!.
add_het_edges_to_graph([H|T],N,Graph0,Graph1):-
add_edges(Graph0,[ch(N)-d(H)],Graph2),
add_het_edges_to_graph(T,N,Graph2,Graph1).
add_edges_to_graph([],_Atoms,Graph,Graph):-!.
add_edges_to_graph([H|T],Atoms,Graph0,Graph1):-
add_edges_from_atom(Atoms,H,Graph0,Graph2),
add_edges_to_graph(T,Atoms,Graph2,Graph1).
add_edges_from_atom([''],_At,Graph,Graph):-!.
add_edges_from_atom([H|T],At,Graph0,Graph1):-
add_edges(Graph0,[At-d(H)],Graph2),
add_edges_from_atom(T,At,Graph2,Graph1).
gen_het_factors([''],_N,_LH,_Pos,HetF,HetF):-!.
gen_het_factors([H|Atoms],N,LH,Pos,HetF0,[f(Mat,[ch(N),d(H)],[LH,2])|HetF1]):-
gen_het_table(0,LH,Pos,Table),
matrix_new(floats, [LH,2], Table, Mat),
Pos1 is Pos+1,
gen_het_factors(Atoms,N,LH,Pos1,HetF0,HetF1).
gen_het_table(N,N,_Pos,[]):-!.
gen_het_table(N0,N,N0,[0.0,1.0|T]):-!,
N1 is N0+1,
gen_het_table(N1,N,N0,T).
gen_het_table(N0,N,Pos,[1.0,0.0|T]):-
N1 is N0+1,
gen_het_table(N1,N,Pos,T).
@ -1155,6 +1344,19 @@ listN(N,N,[]):-!.
listN(NIn,N,[NIn|T]):- listN(NIn,N,[NIn|T]):-
N1 is NIn+1, N1 is NIn+1,
listN(N1,N,T). listN(N1,N,T).
list2(N,N,[]):-!.
list2(NIn,N,[2|T]):-
N1 is NIn+1,
list2(N1,N,T).
list0(N,N,[]):-!.
list0(NIn,N,[0.0|T]):-
N1 is NIn+1,
list0(N1,N,T).
/* end of predicates for parsing an input file containing a program */ /* end of predicates for parsing an input file containing a program */
/* start of utility predicates */ /* start of utility predicates */