Merge ssh://ssh.dcc.fc.up.pt:31064/home/vsc/github/yap-6.3

packages/python/yap_kernel/CMakeLists.txt

@@ -1,55 +1,364 @@
 
     set (PYTHON_SOURCES
-            yap_ipython/core/getipython.py
-            yap_ipython/core/__init__.py
-            yap_ipython/core/interactiveshell.py
-            # yap_ipython/core/modulefind.py
-            yap_ipython/core/oinspect.py
-            yap_ipython/core/release.py
-            yap_ipython/core/shellapp.py
-            yap_ipython/display.py
-            yap_ipython/__init__.py
-            yap_ipython/shellapp.py
-            yap_kernel_launcher.py
-            yap_kernel/__init__.py
-            yap_kernel/__main__.py
-            yap_kernel/_version.py
-            yap_kernel/codeutil.py
-            yap_kernel/connect.py
-            yap_kernel/datapub.py
-            yap_kernel/displayhook.py
-            yap_kernel/embed.py
-            yap_kernel/eventloops.py
-            yap_kernel/heartbeat.py
-            yap_kernel/interactiveshell.py
-            yap_kernel/iostream.py
-            yap_kernel/jsonutil.py
-            yap_kernel/kernelapp.py
-            yap_kernel/kernelbase.py
-            yap_kernel/kernelspec.py
-            yap_kernel/log.py
-            yap_kernel/parentpoller.py
-            yap_kernel/pickleutil.py
-            yap_kernel/serialize.py
-            yap_kernel/yapkernel.py
-            yap_kernel/zmqshell.py
-            yap_kernel/comm/__init__.py
-            yap_kernel/comm/comm.py
-            yap_kernel/comm/manager.py
-            yap_kernel/gui/__init__.py
-            yap_kernel/gui/gtk3embed.py
-            yap_kernel/gui/gtkembed.py
-            yap_kernel/inprocess/__init__.py
-            yap_kernel/inprocess/blocking.py
-            yap_kernel/inprocess/channels.py
-            yap_kernel/inprocess/client.py
-            yap_kernel/inprocess/ipkernel.py
-            yap_kernel/inprocess/manager.py
-            yap_kernel/inprocess/socket.py
-            yap_kernel/pylab/__init__.py
-            yap_kernel/pylab/backend_inline.py
-            yap_kernel/pylab/config.py
-            )
+yap_kernel_launcher.py
+docs/conf.py
+yap_kernel/serialize.py
+yap_kernel/_eventloop_macos.py
+yap_kernel/jsonutil.py
+yap_kernel/pickleutil.py
+yap_kernel/pylab/backend_inline.py
+yap_kernel/pylab/config.py
+yap_kernel/pylab/__init__.py
+yap_kernel/displayhook.py
+yap_kernel/__main__.py
+yap_kernel/gui/gtk3embed.py
+yap_kernel/gui/gtkembed.py
+yap_kernel/gui/__init__.py
+yap_kernel/parentpoller.py
+yap_kernel/_version.py
+yap_kernel/eventloops.py
+yap_kernel/connect.py
+yap_kernel/comm/comm.py
+yap_kernel/comm/__init__.py
+yap_kernel/comm/manager.py
+yap_kernel/kernelspec.py
+yap_kernel/iostream.py
+yap_kernel/zmqshell.py
+yap_kernel/kernelbase.py
+yap_kernel/heartbeat.py
+yap_kernel/log.py
+yap_kernel/datapub.py
+yap_kernel/codeutil.py
+yap_kernel/kernelapp.py
+yap_kernel/embed.py
+yap_kernel/tests/test_embed_kernel.py
+yap_kernel/tests/test_kernelspec.py
+yap_kernel/tests/_asyncio.py
+yap_kernel/tests/test_serialize.py
+yap_kernel/tests/test_pickleutil.py
+yap_kernel/tests/test_eventloop.py
+yap_kernel/tests/utils.py
+yap_kernel/tests/test_kernel.py
+yap_kernel/tests/test_io.py
+yap_kernel/tests/test_jsonutil.py
+yap_kernel/tests/test_connect.py
+yap_kernel/tests/test_message_spec.py
+yap_kernel/tests/__init__.py
+yap_kernel/tests/test_start_kernel.py
+yap_kernel/tests/test_zmq_shell.py
+yap_kernel/__init__.py
+yap_kernel/inprocess/blocking.py
+yap_kernel/inprocess/socket.py
+yap_kernel/inprocess/constants.py
+yap_kernel/inprocess/channels.py
+yap_kernel/inprocess/tests/test_kernelmanager.py
+yap_kernel/inprocess/tests/test_kernel.py
+yap_kernel/inprocess/tests/__init__.py
+yap_kernel/inprocess/__init__.py
+yap_kernel/inprocess/manager.py
+yap_kernel/inprocess/client.py
+yap_kernel/inprocess/ipkernel.py
+yap_kernel/ipkernel.py
+yap_ipython/display.py
+yap_ipython/frontend.py
+yap_ipython/parallel.py
+yap_ipython/html.py
+yap_ipython/__main__.py
+yap_ipython/testing/iptest.py
+yap_ipython/testing/skipdoctest.py
+yap_ipython/testing/tools.py
+yap_ipython/testing/iptestcontroller.py
+yap_ipython/testing/__main__.py
+yap_ipython/testing/decorators.py
+yap_ipython/testing/ipunittest.py
+yap_ipython/testing/tests/test_tools.py
+yap_ipython/testing/tests/test_ipunittest.py
+yap_ipython/testing/tests/test_decorators.py
+yap_ipython/testing/tests/__init__.py
+yap_ipython/testing/__init__.py
+yap_ipython/testing/globalipapp.py
+yap_ipython/testing/plugin/iptest.py
+yap_ipython/testing/plugin/show_refs.py
+yap_ipython/testing/plugin/simplevars.py
+yap_ipython/testing/plugin/simple.py
+yap_ipython/testing/plugin/ipdoctest.py
+yap_ipython/testing/plugin/test_ipdoctest.py
+yap_ipython/testing/plugin/setup.py
+yap_ipython/testing/plugin/__init__.py
+yap_ipython/testing/plugin/dtexample.py
+yap_ipython/testing/plugin/test_refs.py
+yap_ipython/terminal/ptutils.py
+yap_ipython/terminal/shortcuts.py
+yap_ipython/terminal/ipapp.py
+yap_ipython/terminal/pt_inputhooks/wx.py
+yap_ipython/terminal/pt_inputhooks/pyglet.py
+yap_ipython/terminal/pt_inputhooks/osx.py
+yap_ipython/terminal/pt_inputhooks/gtk.py
+yap_ipython/terminal/pt_inputhooks/tk.py
+yap_ipython/terminal/pt_inputhooks/glut.py
+yap_ipython/terminal/pt_inputhooks/gtk3.py
+yap_ipython/terminal/pt_inputhooks/__init__.py
+yap_ipython/terminal/pt_inputhooks/qt.py
+yap_ipython/terminal/console.py
+yap_ipython/terminal/prompts.py
+yap_ipython/terminal/ptshell.py
+yap_ipython/terminal/embed.py
+yap_ipython/terminal/tests/test_help.py
+yap_ipython/terminal/tests/test_embed.py
+yap_ipython/terminal/tests/test_interactivshell.py
+yap_ipython/terminal/tests/__init__.py
+yap_ipython/terminal/__init__.py
+yap_ipython/terminal/interactiveshell.py
+yap_ipython/terminal/debugger.py
+yap_ipython/terminal/magics.py
+yap_ipython/consoleapp.py
+yap_ipython/core/display.py
+yap_ipython/core/application.py
+yap_ipython/core/builtin_trap.py
+yap_ipython/core/formatters.py
+yap_ipython/core/prefilter.py
+yap_ipython/core/getipython.py
+yap_ipython/core/usage.py
+yap_ipython/core/oinspect.py
+yap_ipython/core/displayhook.py
+yap_ipython/core/hooks.py
+yap_ipython/core/splitinput.py
+yap_ipython/core/page.py
+yap_ipython/core/history.py
+yap_ipython/core/displaypub.py
+yap_ipython/core/profiledir.py
+yap_ipython/core/shellapp.py
+yap_ipython/core/extensions.py
+yap_ipython/core/compilerop.py
+yap_ipython/core/events.py
+yap_ipython/core/pylabtools.py
+yap_ipython/core/completer.py
+yap_ipython/core/prompts.py
+yap_ipython/core/latex_symbols.py
+yap_ipython/core/macro.py
+yap_ipython/core/inputsplitter.py
+yap_ipython/core/error.py
+yap_ipython/core/profileapp.py
+yap_ipython/core/magic_arguments.py
+yap_ipython/core/logger.py
+yap_ipython/core/inputtransformer.py
+yap_ipython/core/payloadpage.py
+yap_ipython/core/crashhandler.py
+yap_ipython/core/magics/display.py
+yap_ipython/core/magics/execution.py
+yap_ipython/core/magics/namespace.py
+yap_ipython/core/magics/basic.py
+yap_ipython/core/magics/extension.py
+yap_ipython/core/magics/history.py
+yap_ipython/core/magics/pylab.py
+yap_ipython/core/magics/config.py
+yap_ipython/core/magics/osm.py
+yap_ipython/core/magics/script.py
+yap_ipython/core/magics/__init__.py
+yap_ipython/core/magics/auto.py
+yap_ipython/core/magics/logging.py
+yap_ipython/core/magics/code.py
+yap_ipython/core/ultratb.py
+yap_ipython/core/tests/test_application.py
+yap_ipython/core/tests/simpleerr.py
+yap_ipython/core/tests/test_paths.py
+yap_ipython/core/tests/bad_all.py
+yap_ipython/core/tests/test_prefilter.py
+yap_ipython/core/tests/test_logger.py
+yap_ipython/core/tests/test_interactiveshell.py
+yap_ipython/core/tests/test_events.py
+yap_ipython/core/tests/test_display.py
+yap_ipython/core/tests/test_autocall.py
+yap_ipython/core/tests/test_formatters.py
+yap_ipython/core/tests/test_alias.py
+yap_ipython/core/tests/nonascii.py
+yap_ipython/core/tests/test_displayhook.py
+yap_ipython/core/tests/test_profile.py
+yap_ipython/core/tests/test_imports.py
+yap_ipython/core/tests/test_oinspect.py
+yap_ipython/core/tests/test_inputtransformer.py
+yap_ipython/core/tests/test_magic_arguments.py
+yap_ipython/core/tests/test_debugger.py
+yap_ipython/core/tests/test_hooks.py
+yap_ipython/core/tests/test_run.py
+yap_ipython/core/tests/test_pylabtools.py
+yap_ipython/core/tests/print_argv.py
+yap_ipython/core/tests/test_page.py
+yap_ipython/core/tests/test_compilerop.py
+yap_ipython/core/tests/test_prompts.py
+yap_ipython/core/tests/test_magic_terminal.py
+yap_ipython/core/tests/__init__.py
+yap_ipython/core/tests/test_ultratb.py
+yap_ipython/core/tests/test_magic.py
+yap_ipython/core/tests/test_iplib.py
+yap_ipython/core/tests/test_completer.py
+yap_ipython/core/tests/test_shellapp.py
+yap_ipython/core/tests/daft_extension/daft_extension.py
+yap_ipython/core/tests/refbug.py
+yap_ipython/core/tests/tclass.py
+yap_ipython/core/tests/test_extension.py
+yap_ipython/core/tests/test_splitinput.py
+yap_ipython/core/tests/test_completerlib.py
+yap_ipython/core/tests/nonascii2.py
+yap_ipython/core/tests/test_inputsplitter.py
+yap_ipython/core/tests/test_handlers.py
+yap_ipython/core/tests/test_history.py
+yap_ipython/core/__init__.py
+yap_ipython/core/autocall.py
+yap_ipython/core/alias.py
+yap_ipython/core/completerlib.py
+yap_ipython/core/magic.py
+yap_ipython/core/interactiveshell.py
+yap_ipython/core/excolors.py
+yap_ipython/core/release.py
+yap_ipython/core/display_trap.py
+yap_ipython/core/debugger.py
+yap_ipython/core/historyapp.py
+yap_ipython/core/payload.py
+yap_ipython/config.py
+yap_ipython/utils/frame.py
+yap_ipython/utils/ipstruct.py
+yap_ipython/utils/module_paths.py
+yap_ipython/utils/jsonutil.py
+yap_ipython/utils/PyColorize.py
+yap_ipython/utils/pickleutil.py
+yap_ipython/utils/eventful.py
+yap_ipython/utils/ulinecache.py
+yap_ipython/utils/generics.py
+yap_ipython/utils/version.py
+yap_ipython/utils/tz.py
+yap_ipython/utils/_process_cli.py
+yap_ipython/utils/wildcard.py
+yap_ipython/utils/dir2.py
+yap_ipython/utils/strdispatch.py
+yap_ipython/utils/sysinfo.py
+yap_ipython/utils/io.py
+yap_ipython/utils/decorators.py
+yap_ipython/utils/contexts.py
+yap_ipython/utils/data.py
+yap_ipython/utils/terminal.py
+yap_ipython/utils/syspathcontext.py
+yap_ipython/utils/tokenize2.py
+yap_ipython/utils/localinterfaces.py
+yap_ipython/utils/_process_win32_controller.py
+yap_ipython/utils/py3compat.py
+yap_ipython/utils/sentinel.py
+yap_ipython/utils/colorable.py
+yap_ipython/utils/_sysinfo.py
+yap_ipython/utils/importstring.py
+yap_ipython/utils/tokenutil.py
+yap_ipython/utils/traitlets.py
+yap_ipython/utils/path.py
+yap_ipython/utils/daemonize.py
+yap_ipython/utils/log.py
+yap_ipython/utils/openpy.py
+yap_ipython/utils/tempdir.py
+yap_ipython/utils/_process_common.py
+yap_ipython/utils/tests/test_openpy.py
+yap_ipython/utils/tests/test_path.py
+yap_ipython/utils/tests/test_shimmodule.py
+yap_ipython/utils/tests/test_sysinfo.py
+yap_ipython/utils/tests/test_pycolorize.py
+yap_ipython/utils/tests/test_wildcard.py
+yap_ipython/utils/tests/test_imports.py
+yap_ipython/utils/tests/test_importstring.py
+yap_ipython/utils/tests/test_module_paths.py
+yap_ipython/utils/tests/test_io.py
+yap_ipython/utils/tests/test_text.py
+yap_ipython/utils/tests/test_decorators.py
+yap_ipython/utils/tests/test_tokenutil.py
+yap_ipython/utils/tests/test_process.py
+yap_ipython/utils/tests/test_dir2.py
+yap_ipython/utils/tests/__init__.py
+yap_ipython/utils/tests/test_capture.py
+yap_ipython/utils/tests/test_tempdir.py
+yap_ipython/utils/encoding.py
+yap_ipython/utils/__init__.py
+yap_ipython/utils/signatures.py
+yap_ipython/utils/_process_win32.py
+yap_ipython/utils/coloransi.py
+yap_ipython/utils/_process_posix.py
+yap_ipython/utils/shimmodule.py
+yap_ipython/utils/timing.py
+yap_ipython/utils/text.py
+yap_ipython/utils/process.py
+yap_ipython/utils/capture.py
+yap_ipython/paths.py
+yap_ipython/nbconvert.py
+yap_ipython/external/mathjax.py
+yap_ipython/external/qt_for_kernel.py
+yap_ipython/external/decorators/_numpy_testing_noseclasses.py
+yap_ipython/external/decorators/_decorators.py
+yap_ipython/external/decorators/__init__.py
+yap_ipython/external/__init__.py
+yap_ipython/external/qt_loaders.py
+yap_ipython/__init__.py
+yap_ipython/sphinxext/ipython_console_highlighting.py
+yap_ipython/sphinxext/ipython_directive.py
+yap_ipython/sphinxext/custom_doctests.py
+yap_ipython/sphinxext/__init__.py
+yap_ipython/kernel/adapter.py
+yap_ipython/kernel/channelsabc.py
+yap_ipython/kernel/__main__.py
+yap_ipython/kernel/launcher.py
+yap_ipython/kernel/multikernelmanager.py
+yap_ipython/kernel/restarter.py
+yap_ipython/kernel/managerabc.py
+yap_ipython/kernel/threaded.py
+yap_ipython/kernel/clientabc.py
+yap_ipython/kernel/connect.py
+yap_ipython/kernel/kernelspecapp.py
+yap_ipython/kernel/kernelspec.py
+yap_ipython/kernel/channels.py
+yap_ipython/kernel/__init__.py
+yap_ipython/kernel/manager.py
+yap_ipython/kernel/client.py
+yap_ipython/nbformat.py
+yap_ipython/extensions/cythonmagic.py
+yap_ipython/extensions/storemagic.py
+yap_ipython/extensions/tests/test_autoreload.py
+yap_ipython/extensions/tests/test_storemagic.py
+yap_ipython/extensions/tests/__init__.py
+yap_ipython/extensions/__init__.py
+yap_ipython/extensions/rmagic.py
+yap_ipython/extensions/sympyprinting.py
+yap_ipython/extensions/autoreload.py
+yap_ipython/yapi.py
+yap_ipython/qt.py
+yap_ipython/lib/display.py
+yap_ipython/lib/pretty.py
+yap_ipython/lib/inputhookgtk.py
+yap_ipython/lib/inputhookwx.py
+yap_ipython/lib/lexers.py
+yap_ipython/lib/demo.py
+yap_ipython/lib/inputhookgtk3.py
+yap_ipython/lib/kernel.py
+yap_ipython/lib/inputhookpyglet.py
+yap_ipython/lib/editorhooks.py
+yap_ipython/lib/inputhook.py
+yap_ipython/lib/backgroundjobs.py
+yap_ipython/lib/latextools.py
+yap_ipython/lib/deepreload.py
+yap_ipython/lib/tests/test_editorhooks.py
+yap_ipython/lib/tests/test_backgroundjobs.py
+yap_ipython/lib/tests/test_display.py
+yap_ipython/lib/tests/test_pretty.py
+yap_ipython/lib/tests/test_imports.py
+yap_ipython/lib/tests/test_clipboard.py
+yap_ipython/lib/tests/test_lexers.py
+yap_ipython/lib/tests/test_deepreload.py
+yap_ipython/lib/tests/test_security.py
+yap_ipython/lib/tests/__init__.py
+yap_ipython/lib/tests/test_latextools.py
+yap_ipython/lib/__init__.py
+yap_ipython/lib/guisupport.py
+yap_ipython/lib/security.py
+yap_ipython/lib/inputhookglut.py
+yap_ipython/lib/clipboard.py
+yap_ipython/lib/inputhookqt4.py
+__init__.py
+
+         )
 
             set (EXTRAS
                     MANIFEST.in
@@ -60,15 +369,13 @@
                 )
 
                 set (RESOURCES
-                    resources/custom.js
-                    resources/prolog.js
-                    #resources/logo-32x32.png
-                    #resources/logo-64x64.png
+                    #yap_kernel/resources/logo-32x32.png
+                    #yap_kernel/resourcess/logo-64x64.png
             )
             set (RENAMED_RESOURCES
-                resources/logo-32x32.png
-                resources/logo-64x64.png
-    # resources/codemirror/mode/prolog/prolog.js
+                yap_kernel/resources/logo-32x32.png
+                yap_kernel/resources/logo-64x64.png
+    # yap_kernel/resources/codemirror/mode/prolog/prolog.js
     )
 
             set (PL_SOURCES
@@ -79,29 +386,44 @@ set(FILES ${PYTHON_SOURCES} ${PL_SOURCES} ${EXTRAS} ${RESOURCES})
 
     set(SETUP_PY ${CMAKE_CURRENT_BINARY_DIR}/setup.py)
 
-    add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/${i}
-      COMMAND ${CMAKE_COMMAND} -E tar cvf ${CMAKE_CURRENT_BINARY_DIR}/yap.tgz  ${FILESi}
+    add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/yap.tgz
+      COMMAND ${CMAKE_COMMAND} -E tar cf ${CMAKE_CURRENT_BINARY_DIR}/yap.tgz  ${FILES}
 
 
       WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
+      DEPENDS ${FILES}
 )
 
 
-add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/resources/logo-32x32.png
-            COMMAND ${CMAKE_COMMAND} -E tar xvf yap.tgz 
-            COMMAND ${CMAKE_COMMAND} -E copy_if_changed ${CMAKE_SOURCE_DIR}/docs/icons/yap_32z32x32.png  ${CMAKE_CURRENT_BINARY_DIR}/resources/logo-32x32.png
-            DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/docs/icons/yap_32x32x32.png
+add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/logo-32x32.png
+ COMMAND ${CMAKE_COMMAND} -E make_directory yap_kernel/resources
+            COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_SOURCE_DIR}/docs/icons/yap_32x32x32.png  ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/logo-32x32.png
+            DEPENDS ${CMAKE_SOURCE_DIR}/docs/icons/yap_32x32x32.png
         )
 
 
-        add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/resources/logo-64x64.png
-                    COMMAND ${CMAKE_COMMAND} -E copy_if_changed ${CMAKE_SOURCE_DIR}/docs/icons/yap_64x64x32.png  ${CMAKE_CURRENT_BINARY_DIR}/resources/logo-64x64.png
+        add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/logo-64x64.png
+                    COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_SOURCE_DIR}/docs/icons/yap_64x64x32.png  ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/logo-64x64.png
+            DEPENDS ${CMAKE_SOURCE_DIR}/docs/icons/yap_64x64x32.png
                 )
 
-	      add_custom_target(YAP_KERNEL
-		COMMAND ${CMAKE_COMMAND} -E tar xvf yap.tgz
+
+
+        add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/kernel.js
+                    COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_CURRENT_SOURCE_DIR}/kernel.js  ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/
+            DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/kernel.js
+                )
+
+	      add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/prolog.js
+                    COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_SOURCE_DIR}/misc/editors/yap.js  ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/prolog.js
+            DEPENDS ${CMAKE_SOURCE_DIR}/misc/editors/yap.js
+                )
+
+	      add_custom_target(YAP_KERNEL ALL
+		COMMAND ${CMAKE_COMMAND} -E tar xzf yap.tgz
         COMMAND ${PYTHON_EXECUTABLE}  ${SETUP_PY} build sdist bdist
             WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
+            DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/logo-32x32.png ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/logo-64x64.png yap.tgz ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/kernel.js ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/prolog.js
 	    )
 
 	  

packages/python/yap_kernel/kernel.js

@@ -1,42 +1,18 @@
 
-;(function(window_CodeMirror){
-  "use strict";
+define([
+    "/kernelspecs/yap_kernel/prolog.js"],function(CodeMirror){
 
-    // the `require` namespace for codemirror
-    CM_PATH = "components/codemirror/";
-
-  define(
-    [
-      "underscore",
-      "jquery",
-      CM_PATH + "lib/codemirror",
-      "base/js/namespace",
-      // silent upgrades
-      "./jshint.js",
-      CM_PATH + "addon/lint/javascript-lint",
-      CM_PATH + "addon/hint/javascript-hint",
-      CM_PATH + "addon/lint/lint",
-      CM_PATH + "addon/hint/show-hint",
-      "./prolog.js"
-    ],
-    function(_, $, CodeMirror, Jupyter){
-
-                // the main function
-                cm_tweak_js = function(cell){
-                  var editor = cell.code_mirror,
-                    opts = {},
-                    meta = ensure_ns(cell),
-                    keys = editor.getOption("extraKeys") || {},
-                    mode = editor.getMode();
-
-                    // only update editors we care about, reset ones we might have messed
-                    if(!editor){
-                      return;
-                  } else {
-                      editor.setOption("mode", "x-text/prolog");
-                  }
-          }
-        }
-    } // the `define` callback
-  ); // the `define`
-    ).call(this, window.CodeMirror);
+	var onload = function(){
+            console.log("I am being loaded");
+	    var cell = Jupyter.notebook.get_selected_cell();
+	    var cm = cell.config;
+	    var patch = {
+		CodeCell:{
+		    cm_config:{mode: "prolog"} // only change here.
+		}
+	    };
+	    config.update(patch);
+	    return {onload:onload};
+	}	
+    }
+      );

packages/python/yap_kernel/setup.py

@@ -37,12 +37,15 @@ from distutils.core import setup
 
 pjoin = os.path.join
 here = os.path.abspath(os.path.dirname(__file__))
+packages = []
 # pkg_root = pjoin(here, name)
 
-packages = setuptools.find_packages(here)
-# for d, _, _ in os.walk(pjoin(here, name)):
-#     if os.path.exists(pjoin(d, '__init__.py')):
-#         packages.append(d[len(here)+1:].replace(os.path.sep, '.'))
+for d, _, _ in os.walk(pjoin(here, 'yap_kernel')):
+    if os.path.exists(pjoin(d, '__init__.py')):
+        packages.append(d[len(here)+1:].replace(os.path.sep, '.'))
+for d, _, _ in os.walk(pjoin(here, 'yap_ipython')):
+    if os.path.exists(pjoin(d, '__init__.py')):
+        packages.append(d[len(here)+1:].replace(os.path.sep, '.'))
 
 sys.path.insert(0, here)
 package_data = {
@@ -50,13 +53,14 @@ package_data = {
 'yap_kernel': ['resources/*.*']
 }
 
-
-version_ns = {here, name, '_version.py')) as f:
+version_ns = {}
+with open(pjoin(here, name, '_version.py')) as f:
     exec(f.read(), {}, version_ns)
 
 
 
 
+
 setup_args = dict(
     name            = name,
     version         = version_ns['__version__'],
@@ -64,10 +68,10 @@ setup_args = dict(
     packages        = packages,
     py_modules      = ['yap_kernel_launcher'],
     package_data    = package_data,
-    package_dir = {'':here},
+    #package_dir = {'':here},
     description     = "YAP Kernel for Jupyter",
     author          = 'YAP Development Team',
-    author_email    = 'YAP-dev@scipy.org',
+    author_email    = 'yap-dev@scipy.org',
     url             = 'http://ipython.org',
     license         = 'BSD',
     platforms       = "Linux, Mac OS X, Windows",
@@ -95,7 +99,7 @@ if any(a.startswith(('bdist', 'build', 'install')) for a in sys.argv):
 
 
     argv = make_yap_kernel_cmd(executable=sys.executable)
-    dest = os.path.join(here, 'resources')
+    dest = os.path.join(here, 'yap_kernel', 'resources')
     try:
         write_kernel_spec(dest, overrides={'argv': argv})
     except:
@@ -104,14 +108,14 @@ if any(a.startswith(('bdist', 'build', 'install')) for a in sys.argv):
     #setup_args['data_files'] = [(pjoin('share', 'jupyter', 'kernels', KERNEL_NAME), glob(pjoin(dest, '*')))]
     mode_loc = pjoin( sysconfig.get_path('platlib'), 'notebook', 'static', 'components', 'codemirror', 'mode', 'prolog')
     custom_loc = pjoin( sysconfig.get_path('platlib'), 'notebook', 'static', 'custom')
-    try:
-        shutil.copy( pjoin( custom_loc, "custom.js") , pjoin( custom_loc, "custom.js.orig"))
-        shutil.copy( pjoin( "resources", "custom.js") , pjoin( custom_loc, "custom.js"))
-        if not os.path.exists(mode_loc):
-            os.makedirs(mode_loc)
-        shutil.copy( pjoin( "resources","prolog.js") , mode_loc)
-    except:
-        pass
+#    try:
+#        shutil.copy( pjoin( custom_loc, "custom.js") , pjoin( custom_loc, "custom.js.orig"))
+#        shutil.copy( pjoin( "resources", "custom.js") , pjoin( custom_loc, "custom.js"))
+#        if not os.path.exists(mode_loc):
+#            os.makedirs(mode_loc)
+#        shutil.copy( pjoin( "resources","prolog.js") , mode_loc)
+#    except:
+#        pass
 
 extras_require = setuptools_args['extras_require'] = {
     'test:python_version=="2.7"': ['mock'],

packages/python/yap_kernel/yap_ipython/core/__init__.py

@@ -0,0 +1 @@
+#nothing here

packages/python/yap_kernel/yap_ipython/yapi.py

@@ -61,7 +61,7 @@ class YAPInputSplitter(InputSplitter):
     def __init__(self, line_input_checker=True, physical_line_transforms=None,
                     logical_line_transforms=None):
         self._buffer_raw = []
-v        self._validate = True
+        self._validate = True
         self.yapeng = None
 
         if physical_line_transforms is not None:
@@ -524,7 +524,6 @@ class YAPRun:
         return self.errors
 
     def jupyter_query(self, s):
-        import pdb; pdb.set_trace()
         #
         # construct a self.query from a one-line string
         # self.q is opaque to Python
@@ -551,7 +550,7 @@ class YAPRun:
         # variable names should match strings
         #for eq in vs:
         #    if not isinstance(eq[0],str):x
-xf        #        print( "Error: Variable Name matches a Python Symbol")
+        #        print( "Error: Variable Name matches a Python Symbol")
         #        return
         # ask = True
         # launch the query
@@ -677,7 +676,7 @@ xf        #        print( "Error: Variable Name matches a Python Symbol")
         #                 preprocessing_exc_tuple = sys.exc_info()
 
 
-      e  for i in self.syntaxErrors(raw_cell):
+        for i in self.syntaxErrors(raw_cell):
             try:
                 (what,lin,_,text) = i
                 e = SyntaxError(what, ("<string>", lin, 1, text))
@@ -715,7 +714,7 @@ xf        #        print( "Error: Variable Name matches a Python Symbol")
                 mcell = cell.lstrip('%')
             txt0 = mcell.split(maxsplit = 2, sep = '\n')
             txt = txt0[0].split(maxsplit = 2)
-            magic = txt[0]                     
+            magic = txt[0]
             if len(txt) == 2:
                 line = txt[1]
             else: