docs

docs/CMakeLists.txt

@@ -39,6 +39,10 @@ ${CMAKE_SOURCE_DIR}/packages/swig
         ${CMAKE_SOURCE_DIR}/packages/Problog/problog_examples/output
          ${CMAKE_SOURCE_DIR}/packages/Problog/problog_examples/queries
 ${CMAKE_SOURCE_DIR}/packages/myddas/sqlite3/src
+${CMAKE_SOURCE_DIR}/packages/gecode/6.0.1
+${CMAKE_SOURCE_DIR}/packages/gecode/6.0.0
+${CMAKE_SOURCE_DIR}/packages/gecode/5.1.0
+${CMAKE_SOURCE_DIR}/packages/gecode/5.0.0
 ${CMAKE_SOURCE_DIR}/packages/gecode/4.4.0
 ${CMAKE_SOURCE_DIR}/packages/gecode/4.2.1
 ${CMAKE_SOURCE_DIR}/packages/gecode/4.2.0
@@ -52,14 +56,19 @@ ${CMAKE_SOURCE_DIR}/packages/problog
 ${CMAKE_SOURCE_DIR}/packages/gecode/dev
 ${CMAKE_SOURCE_DIR}/C/traced_absmi_insts.h
 ${CMAKE_SOURCE_DIR}/H/globals.h
+${CMAKE_SOURCE_DIR}/OPTYap/locks_alpha_funcs.h
+${CMAKE_SOURCE_DIR}/OPTYap/locks_mips_funcs.h
+${CMAKE_SOURCE_DIR}/OPTYap/locks_sparc.h
 ${CMAKE_SOURCE_DIR}/packages/cplint
 ${CMAKE_SOURCE_DIR}/packages/CLPBN/examples
 ${CMAKE_SOURCE_DIR}/packages/CLPBN/horus
+${CMAKE_SOURCE_DIR}/packages/cuda
 ${CMAKE_SOURCE_DIR}/packages/prosqlite
 ${CMAKE_SOURCE_DIR}/packages/pyswip
 ${CMAKE_SOURCE_DIR}/packages/python/yap_kernel
 ${CMAKE_SOURCE_DIR}/packages/python/swig
 ${CMAKE_SOURCE_DIR}/packages/yap-lbfgs/liblbfgs-1.10
+${CMAKE_SOURCE_DIR}/packages/swi-minisat2
 ${CMAKE_SOURCE_DIR}/library/dialect/swi/os
 ${CMAKE_SOURCE_DIR}/*/bprolog/* 
                          ${CMAKE_SOURCE_DIR}/*/prism/* 
@@ -77,6 +86,7 @@ ${CMAKE_SOURCE_DIR}/*/bprolog/*
 )
 
 
+
 foreach(i ${DOCS_EXCLUDE_})
   string(APPEND DOCS_EXCLUDE ${i} " ")
 endforeach(i ${DOCS_EXCLUDE_})

docs/Doxyfile.in

@@ -1090,7 +1090,7 @@ VERBATIM_HEADERS       = YES
 # classes, structs, unions or interfaces.
 # The default value is: YES.
 
-ALPHABETICAL_INDEX     = NO
+ALPHABETICAL_INDEX     = YES
 
 # The COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns in
 # which the alphabetical index list will be split.

docs/md/core.md

@@ -1,10 +1,14 @@
+
 @defgroup builtins Core Built-ins
-@{
+
+[TOC]
 
 
-@brief This chapter describes the core built-in predicates  that control the execution of
+This chapter describes the core built-in predicates  that control the execution of
 Prolog programs, provide fundamental functionality such as termm manipulation or arithmetic, and support interaction with external
-resources,
+resources.
+
+@{
 
 Many of the predicates described here have been standardised by the International Standard Organization.
  The corresponding standartised subset of Prolog also known as ISO-Prolog.    
@@ -20,6 +24,8 @@ notation will be used:
 
 + an argument with no preceding symbol can be used in both ways.
 
-[TOC]
+
+
 
 @}
+	

docs/md/yap.md

@@ -21,7 +21,7 @@ The manual is organised as follows:
 
 + @ref run
 
-+ @ref builtins
++ @subpage builtins
 
 + @ref extensions