docs

2018-05-20 18:40:56 +01:00
parent bdf7088665
commit 518ce92bea
17 changed files with 770 additions and 806 deletions
--- a/packages/raptor/doc/Doxyfile
+++ b/packages/raptor/doc/Doxyfile
@@ -1,4 +1,4 @@
-# Doxyfile 1.8.11
+# Doxyfile 1.8.14

 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
@@ -8,9 +8,9 @@
 #
 # All text after a single hash (#) is considered a comment and will be ignored.
 # The format is:
-# TAG = value [value, file.]
+# TAG = value [value, ...]
 # For lists, items can also be appended using:
-# TAG += value [value, file.]
+# TAG += value [value, ...]
 # Values that contain spaces should be placed between quotes (\" \").

 #---------------------------------------------------------------------------
@@ -68,7 +68,7 @@ OUTPUT_DIRECTORY       = /home/vsc/github/yap-6.3/docs
 # performance problems for the file system.
 # The default value is: NO.

-CREATE_SUBDIRS         = YES
+CREATE_SUBDIRS         = NO

 # If the ALLOW_UNICODE_NAMES tag is set to YES, doxygen will allow non-ASCII
 # characters to appear in the names of generated files. If set to NO, non-ASCII
@@ -98,7 +98,7 @@ OUTPUT_LANGUAGE        = English
 # documentation (similar to Javadoc). Set to NO to disable this.
 # The default value is: YES.

- BRIEF_MEMBER_DESC      = YES
+BRIEF_MEMBER_DESC      = YES

 # If the REPEAT_BRIEF tag is set to YES, doxygen will prepend the brief
 # description of a member or function before the detailed description
@@ -204,7 +204,7 @@ MULTILINE_CPP_IS_BRIEF = NO
 # documentation from any documented member that it re-implements.
 # The default value is: YES.

-INHERIT_DOCS           = YES
+INHERIT_DOCS           = NO

 # If the SEPARATE_MEMBER_PAGES tag is set to YES then doxygen will produce a new
 # page for each member. If set to NO, the documentation of a member will be part
@@ -229,10 +229,15 @@ TAB_SIZE               = 4
 # "Side Effects:". You can put \n's in the value part of an alias to insert
 # newlines.

-ALIASES                = "predicate=@brief" "license=@par License:\n" \
-   "doxygen=\if english" "endenglish=\endif" "dutch=\if dutch" \
-    "enddutch=\endif" "tbd=@par TBD:\n"  "compat=@par Compatibility:\n" \
-        "error=@par Error:\n"
+ALIASES                = "predicate=@brief" \
+                         "license=@par License:\n" \
+                         "doxygen=\if english" \
+                         "endenglish=\endif" \
+                         "dutch=\if dutch" \
+                         "enddutch=\endif" \
+                         "tbd=@par TBD:\n" \
+                         "compat=@par Compatibility:\n" \
+                         "error=@par Error:\n"

 # This tag can be used to specify a number of word-keyword mappings (TCL only).
 # A mapping has the form "name=value". For example adding "class=itcl::class"
@@ -246,7 +251,7 @@ TCL_SUBST              =
 # members will be omitted, etc.
 # The default value is: NO.

-OPTIMIZE_OUTPUT_FOR_C  = NO
+OPTIMIZE_OUTPUT_FOR_C  = YES

 # Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java or
 # Python sources only. Doxygen will then generate output that is more tailored
@@ -291,7 +296,10 @@ OPTIMIZE_OUTPUT_FOR_PROLOG                                        = YES
 # Note that for custom extensions you also need to set FILE_PATTERNS otherwise
 # the files are not read by doxygen.

-EXTENSION_MAPPING      = md pl=Prolog yap=Prolog ypp=Prolog
+EXTENSION_MAPPING      = md \
+                         pl=Prolog \
+                         yap=Prolog \
+                         ypp=Prolog

 # If the MARKDOWN_SUPPORT tag is enabled then doxygen pre-processes all comments
 # according to the Markdown format, which allows for more readable
@@ -303,6 +311,15 @@ EXTENSION_MAPPING      = md pl=Prolog yap=Prolog ypp=Prolog

 MARKDOWN_SUPPORT       = YES

+# When the TOC_INCLUDE_HEADINGS tag is set to a non-zero value, all headings up
+# to that level are automatically included in the table of contents, even if
+# they do not have an id attribute.
+# Note: This feature currently applies only to Markdown headings.
+# Minimum value: 0, maximum value: 99, default value: 0.
+# This tag requires that the tag MARKDOWN_SUPPORT is set to YES.
+
+TOC_INCLUDE_HEADINGS   = 99
+
 # When enabled doxygen tries to link words that correspond to documented
 # classes, or namespaces to their corresponding documentation. Such a link can
 # be prevented in individual cases by putting a % sign in front of the word or
@@ -407,7 +424,7 @@ TYPEDEF_HIDES_STRUCT   = NO
 # code, doxygen keeps a cache of pre-resolved symbols. If the cache is too small
 # doxygen will become slower. If the cache is too large, memory is wasted. The
 # cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range
-# is 0file9, the default is 0, corresponding to a cache size of 2^16=65536
+# is 0..9, the default is 0, corresponding to a cache size of 2^16=65536
 # symbols. At the end of a run doxygen will report the cache usage and suggest
 # the optimal cache size from a speed point of view.
 # Minimum value: 0, maximum value: 9, default value: 0.
@@ -636,8 +653,8 @@ GENERATE_BUGLIST       = YES
 GENERATE_DEPRECATEDLIST= YES

 # The ENABLED_SECTIONS tag can be used to enable conditional documentation
-# sections, marked by \if <section_label> file. \endif and \cond <section_label>
-# file. \endcond blocks.
+# sections, marked by \if <section_label> ... \endif and \cond <section_label>
+# ... \endcond blocks.

 ENABLED_SECTIONS       =

@@ -694,7 +711,7 @@ FILE_VERSION_FILTER    =
 # DoxygenLayout.xml, doxygen will parse it automatically even if the LAYOUT_FILE
 # tag is left empty.

-LAYOUT_FILE            =
+LAYOUT_FILE            =  /home/vsc/github/yap-6.3/docs/custom/DoxygenLayout.xml

 # The CITE_BIB_FILES tag can be used to specify one or more bib files containing
 # the reference definitions. This must be a list of .bib files. The .bib
@@ -728,10 +745,10 @@ WARNINGS               = YES

 # If the WARN_IF_UNDOCUMENTED tag is set to YES then doxygen will generate
 # warnings for undocumented members. If EXTRACT_ALL is set to YES then this flag
-                                     # will automatically be disabled.
+# will automatically be disabled.
 # The default value is: YES.

-WARN_IF_UNDOCUMENTED   = YES
+WARN_IF_UNDOCUMENTED   = NO

 # If the WARN_IF_DOC_ERROR tag is set to YES, doxygen will generate warnings for
 # potential errors in the documentation, such as not documenting some parameters
@@ -749,6 +766,12 @@ WARN_IF_DOC_ERROR      = YES

 WARN_NO_PARAMDOC       = NO

+# If the WARN_AS_ERROR tag is set to YES then doxygen will immediately stop when
+# a warning is encountered.
+# The default value is: NO.
+
+WARN_AS_ERROR          = NO
+
 # The WARN_FORMAT tag determines the format of the warning messages that doxygen
 # can produce. The string should contain the $file, $line, and $text tags, which
 # will be replaced by the file and line number from which the warning originated
@@ -775,8 +798,7 @@ WARN_LOGFILE           =
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # Note: If this tag is empty the current directory is searched.

-INPUT =   /home/vsc/github/yap-6.3/packages/raptor
-
+INPUT                  = /home/vsc/github/yap-6.3/packages/raptor

 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -798,10 +820,56 @@ INPUT_ENCODING         = UTF-8
 # If left blank the following patterns are tested:*.c, *.cc, *.cxx, *.cpp,
 # *.c++, *.java, *.ii, *.ixx, *.ipp, *.i++, *.inl, *.idl, *.ddl, *.odl, *.h,
 # *.hh, *.hxx, *.hpp, *.h++, *.cs, *.d, *.php, *.php4, *.php5, *.phtml, *.inc,
-# *.m, *.markdown, *.md, *.mm, *.dox, *.py, *.f90, *.f, *.for, *.tcl, *.vhd,
-# *.vhdl, *.ucf, *.qsf, *.as and *.js.
+# *.m, *.markdown, *.md, *.mm, *.dox, *.py, *.pyw, *.f90, *.f95, *.f03, *.f08,
+# *.f, *.for, *.tcl, *.vhd, *.vhdl, *.ucf, *.qsf, *.as, *.js, *.yap, *.ypp,
+# *.prolog and *.pl.

-FILE_PATTERNS          = *.c *.cc *.cxx *.cpp *.c++ *.java *.ii *.ixx *.ipp *.i++ *.inl *.idl *.ddl *.odl *.h *.h.in *.hh *.hxx *.hpp *.h++ *.cs *.d *.php *.php4 *.php5 *.phtml *.inc *.m *.markdown *.md *.mm *.dox *.py *.f90 *.f *.for *.tcl *.vhd *.vhdl *.ucf *.qsf *.as *.js *.pl *.yap *.ypp
+FILE_PATTERNS          = *.c \
+                         *.cc \
+                         *.cxx \
+                         *.cpp \
+                         *.c++ \
+                         *.java \
+                         *.ii \
+                         *.ixx \
+                         *.ipp \
+                         *.i++ \
+                         *.inl \
+                         *.idl \
+                         *.ddl \
+                         *.odl \
+                         *.h \
+                         *.h.in \
+                         *.hh \
+                         *.hxx \
+                         *.hpp \
+                         *.h++ \
+                         *.cs \
+                         *.d \
+                         *.php \
+                         *.php4 \
+                         *.php5 \
+                         *.phtml \
+                         *.inc \
+                         *.m \
+                         *.markdown \
+                         *.md \
+                         *.mm \
+                         *.dox \
+                         *.py \
+                         *.f90 \
+                         *.f \
+                         *.for \
+                         *.tcl \
+                         *.vhd \
+                         *.vhdl \
+                         *.ucf \
+                         *.qsf \
+                         *.as \
+                         *.js \
+                         *.pl \
+                         *.yap \
+                         *.ypp

 # The RECURSIVE tag can be used to specify whether or not subdirectories should
 # be searched for input files as well.
@@ -816,7 +884,7 @@ RECURSIVE              = YES
 # Note that relative paths are relative to the directory from which doxygen is
 # run.

-EXCLUDE                = /home/vsc/github/yap-6.3/build /home/vsc/github/yap-6.3/Debug /home/vsc/github/yap-6.3/packages/jpl /home/vsc/github/yap-6.3/packages/swig /home/vsc/github/yap-6.3/packages/myddas/sqlite3/src /home/vsc/github/yap-6.3/packages/gecode/4.4.0 /home/vsc/github/yap-6.3/packages/gecode/4.2.1 /home/vsc/github/yap-6.3/packages/gecode/4.2.0 /home/vsc/github/yap-6.3/packages/gecode/4.0.0 /home/vsc/github/yap-6.3/packages/gecode/3.7.3 /home/vsc/github/yap-6.3/packages/gecode/3.7.2 /home/vsc/github/yap-6.3/packages/gecode/3.7.1 /home/vsc/github/yap-6.3/packages/gecode/3.7.0 /home/vsc/github/yap-6.3/packages/gecode/3.6.0 /home/vsc/github/yap-6.3/packages/gecode/dev /home/vsc/github/yap-6.3/C/traced_absmi_insts.h /home/vsc/github/yap-6.3/H/globals.h /home/vsc/github/yap-6.3/packages/cplint /home/vsc/github/yap-6.3/packages/CLPBN/examples /home/vsc/github/yap-6.3/packages/CLPBN/horus /home/vsc/github/yap-6.3/packages/prosqlite /home/vsc/github/yap-6.3/packages/pyswip /home/vsc/github/yap-6.3/packages/yap-lbfgs/liblbfgs-1.10 /home/vsc/github/yap-6.3/library/dialect/swi/os /home/vsc/github/yap-6.3/packages/gecode/gecode3_yap.cc /home/vsc/github/yap-6.3/packages/gecode/gecode4_yap.cc /home/vsc/github/yap-6.3/packages/gecode/gecode3.yap /home/vsc/github/yap-6.3/packages/gecode/gecode4.yap /home/vsc/github/yap-6.3/packages/gecode/gecode3_yap_hand_written.yap /home/vsc/github/yap-6.3/packages/gecode/gecode4_yap_hand_written.yap */CMakeFiles/* *~ */ 
+EXCLUDE                = /home/vsc/github/yap-6.3/build /home/vsc/github/yap-6.3/Debug /home/vsc/github/yap-6.3/packages/jpl /home/vsc/github/yap-6.3/packages/swig /home/vsc/github/yap-6.3/packages/Problog/problog_examples/output /home/vsc/github/yap-6.3/packages/Problog/problog_examples/queries /home/vsc/github/yap-6.3/packages/myddas/sqlite3/src /home/vsc/github/yap-6.3/packages/gecode/4.4.0 /home/vsc/github/yap-6.3/packages/gecode/4.2.1 /home/vsc/github/yap-6.3/packages/gecode/4.2.0 /home/vsc/github/yap-6.3/packages/gecode/4.0.0 /home/vsc/github/yap-6.3/packages/gecode/3.7.3 /home/vsc/github/yap-6.3/packages/gecode/3.7.2 /home/vsc/github/yap-6.3/packages/gecode/3.7.1 /home/vsc/github/yap-6.3/packages/gecode/3.7.0 /home/vsc/github/yap-6.3/packages/gecode/3.6.0 /home/vsc/github/yap-6.3/packages/gecode/dev /home/vsc/github/yap-6.3/C/traced_absmi_insts.h /home/vsc/github/yap-6.3/H/globals.h /home/vsc/github/yap-6.3/packages/cplint /home/vsc/github/yap-6.3/packages/CLPBN/examples /home/vsc/github/yap-6.3/packages/CLPBN/horus /home/vsc/github/yap-6.3/packages/prosqlite /home/vsc/github/yap-6.3/packages/pyswip /home/vsc/github/yap-6.3/packages/yap-lbfgs/liblbfgs-1.10 /home/vsc/github/yap-6.3/library/dialect/swi/os /home/vsc/github/yap-6.3/packages/python /home/vsc/github/yap-6.3/*/bprolog/* /home/vsc/github/yap-6.3/*/prism/* /home/vsc/github/yap-6.3/*/gecodde/[345]* /home/vsc/github/yap-6.3/packages/gecode/gecode3_yap.cc /home/vsc/github/yap-6.3/packages/gecode/gecode4_yap.cc /home/vsc/github/yap-6.3/packages/gecode/gecode5_yap.cc /home/vsc/github/yap-6.3/packages/gecode/gecode3.yap /home/vsc/github/yap-6.3/packages/gecode/gecode4.yap /home/vsc/github/yap-6.3/packages/gecode/gecode5.yap /home/vsc/github/yap-6.3/packages/gecode/gecode3_yap_hand_written.yap /home/vsc/github/yap-6.3/packages/gecode/gecode4_yap_hand_written.yap /home/vsc/github/yap-6.3/packages/gecode/gecode5_yap_hand_written.yap */CMakeFiles/* *~ */ 

 # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
 # directories that are symbolic links (a Unix file system feature) are excluded
@@ -831,14 +899,8 @@ EXCLUDE_SYMLINKS       = NO
 #
 # Note that the wildcards are matched against the file with absolute path, so to
 # exclude all test directories for example use the pattern */test/*
-
-EXCLUDE_PATTERNS       = \
-            /home/vsc/github/yap-6.3/packages/gecode/gecode3_yap.cc \
-            /home/vsc/github/yap-6.3/packages/gecode/gecode4_yap.cc \
-            /home/vsc/github/yap-6.3/packages/gecode/gecode3.yap \
-            /home/vsc/github/yap-6.3/packages/gecode/gecode4.yap \
-            /home/vsc/github/yap-6.3/packages/gecode/gecode3_yap_hand_written.yap \ /home/vsc/github/yap-6.3/packages/gecode/gecode4_yap_hand_written.yap
-            */CMakeFiles/* *~ */\#* \
+  
+EXCLUDE_PATTERNS       = /home/vsc/github/yap-6.3/build /home/vsc/github/yap-6.3/Debug /home/vsc/github/yap-6.3/packages/jpl /home/vsc/github/yap-6.3/packages/swig /home/vsc/github/yap-6.3/packages/Problog/problog_examples/output /home/vsc/github/yap-6.3/packages/Problog/problog_examples/queries /home/vsc/github/yap-6.3/packages/myddas/sqlite3/src /home/vsc/github/yap-6.3/packages/gecode/4.4.0 /home/vsc/github/yap-6.3/packages/gecode/4.2.1 /home/vsc/github/yap-6.3/packages/gecode/4.2.0 /home/vsc/github/yap-6.3/packages/gecode/4.0.0 /home/vsc/github/yap-6.3/packages/gecode/3.7.3 /home/vsc/github/yap-6.3/packages/gecode/3.7.2 /home/vsc/github/yap-6.3/packages/gecode/3.7.1 /home/vsc/github/yap-6.3/packages/gecode/3.7.0 /home/vsc/github/yap-6.3/packages/gecode/3.6.0 /home/vsc/github/yap-6.3/packages/gecode/dev /home/vsc/github/yap-6.3/C/traced_absmi_insts.h /home/vsc/github/yap-6.3/H/globals.h /home/vsc/github/yap-6.3/packages/cplint /home/vsc/github/yap-6.3/packages/CLPBN/examples /home/vsc/github/yap-6.3/packages/CLPBN/horus /home/vsc/github/yap-6.3/packages/prosqlite /home/vsc/github/yap-6.3/packages/pyswip /home/vsc/github/yap-6.3/packages/yap-lbfgs/liblbfgs-1.10 /home/vsc/github/yap-6.3/library/dialect/swi/os /home/vsc/github/yap-6.3/packages/python /home/vsc/github/yap-6.3/*/bprolog/* /home/vsc/github/yap-6.3/*/prism/* /home/vsc/github/yap-6.3/*/gecodde/[345]* /home/vsc/github/yap-6.3/packages/gecode/gecode3_yap.cc /home/vsc/github/yap-6.3/packages/gecode/gecode4_yap.cc /home/vsc/github/yap-6.3/packages/gecode/gecode5_yap.cc /home/vsc/github/yap-6.3/packages/gecode/gecode3.yap /home/vsc/github/yap-6.3/packages/gecode/gecode4.yap /home/vsc/github/yap-6.3/packages/gecode/gecode5.yap /home/vsc/github/yap-6.3/packages/gecode/gecode3_yap_hand_written.yap /home/vsc/github/yap-6.3/packages/gecode/gecode4_yap_hand_written.yap /home/vsc/github/yap-6.3/packages/gecode/gecode5_yap_hand_written.yap */CMakeFiles/* *~ */ 

 # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
 # (namespaces, classes, functions, etc.) that should be excluded from the
@@ -1028,7 +1090,7 @@ VERBATIM_HEADERS       = YES
 # classes, structs, unions or interfaces.
 # The default value is: YES.

-ALPHABETICAL_INDEX     = YES
+ALPHABETICAL_INDEX     = NO

 # The COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns in
 # which the alphabetical index list will be split.
@@ -1087,7 +1149,7 @@ HTML_FILE_EXTENSION    = .html
 # of the possible markers and block names see the documentation.
 # This tag requires that the tag GENERATE_HTML is set to YES.

-HTML_HEADER          = /home/vsc/github/yap-6.3/docs/custom/header.html
+HTML_HEADER            = /home/vsc/github/yap-6.3/docs/custom/header.html

 # The HTML_FOOTER tag can be used to specify a user-defined HTML footer for each
 # generated HTML page. If the tag is left blank doxygen will generate a standard
@@ -1099,6 +1161,7 @@ HTML_HEADER          = /home/vsc/github/yap-6.3/docs/custom/header.html

 HTML_FOOTER            = /home/vsc/github/yap-6.3/docs/custom/footer.html

+
 # The HTML_STYLESHEET tag can be used to specify a user-defined cascading style
 # sheet that is used by each HTML page. It can be used to fine-tune the look of
 # the HTML output. If left blank doxygen will generate a default style sheet.
@@ -1122,9 +1185,8 @@ HTML_STYLESHEET        =
 # list). For an example see the documentation.
 # This tag requires that the tag GENERATE_HTML is set to YES.

-HTML_EXTRA_STYLESHEET  = \
-            /home/vsc/github/yap-6.3/docs/custom/customdoxygen.css \
-	/home/vsc/github/yap-6.3/docs/custom/solarized-light.css \
+HTML_EXTRA_STYLESHEET    = /home/vsc/github/yap-6.3/docs/custom/customdoxygen.css
+

 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
@@ -1134,7 +1196,7 @@ HTML_EXTRA_STYLESHEET  = \
 # files will be copied as-is; there are no commands or markers available.
 # This tag requires that the tag GENERATE_HTML is set to YES.

-HTML_EXTRA_FILES      = /home/vsc/github/yap-6.3/docs/custom/application.js /home/vsc/github/yap-6.3/docs/custom/assets /home/vsc/github/yap-6.3/docs/custom/bootstrap.min.css /home/vsc/github/yap-6.3/docs/custom/bootstrap.min.js /home/vsc/github/yap-6.3/docs/custom/customdoxygen.css /home/vsc/github/yap-6.3/docs/custom/default /home/vsc/github/yap-6.3/docs/custom/doxy-boot.js /home/vsc/github/yap-6.3/docs/custom/font-awesome.min.css /home/vsc/github/yap-6.3/docs/custom/footer.html /home/vsc/github/yap-6.3/docs/custom/header.html /home/vsc/github/yap-6.3/docs/custom/jquery-3.2.1.min.js /home/vsc/github/yap-6.3/docs/custom/offcanvas.css /home/vsc/github/yap-6.3/docs/custom/offcanvas.js /home/vsc/github/yap-6.3/docs/custom/solarized-light.css /home/vsc/github/yap-6.3/docs/custom/theme.css /home/vsc/github/yap-6.3/docs/custom/yap.css 
+HTML_EXTRA_FILES       =  /home/vsc/github/yap-6.3/docs/custom/doxy-boot.js

 # The HTML_COLORSTYLE_HUE tag controls the color of the HTML output. Doxygen
 # will adjust the colors in the style sheet and background images according to
@@ -1175,13 +1237,24 @@ HTML_COLORSTYLE_GAMMA  = 80

 HTML_TIMESTAMP         = NO

+# If the HTML_DYNAMIC_MENUS tag is set to YES then the generated HTML
+# documentation will contain a main index with vertical navigation menus that
+# are dynamically created via Javascript. If disabled, the navigation index will
+# consists of multiple levels of tabs that are statically embedded in every HTML
+# page. Disable this option to support browsers that do not have Javascript,
+# like the Qt help browser.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_DYNAMIC_MENUS     = YES
+
 # If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
 # documentation will contain sections that can be hidden and shown after the
 # page has loaded.
 # The default value is: NO.
 # This tag requires that the tag GENERATE_HTML is set to YES.

-HTML_DYNAMIC_SECTIONS  = NO
+HTML_DYNAMIC_SECTIONS  = YES

 # With HTML_INDEX_NUM_ENTRIES one can control the preferred number of entries
 # shown in the various tree structured indices initially; the user can expand
@@ -1481,7 +1554,7 @@ MATHJAX_FORMAT         = HTML-CSS
 # output directory using the MATHJAX_RELPATH option. The destination directory
 # should contain the MathJax.js script. For instance, if the mathjax directory
 # is located at the same level as the HTML output directory, then
-# MATHJAX_RELPATH should be file/mathjax. The default value points to the MathJax
+# MATHJAX_RELPATH should be ../mathjax. The default value points to the MathJax
 # Content Delivery Network so you can quickly see the result without installing
 # MathJax. However, it is strongly recommended to install a local copy of
 # MathJax from http://www.mathjax.org before deployment.
@@ -1536,7 +1609,7 @@ SEARCHENGINE           = YES
 # The default value is: NO.
 # This tag requires that the tag SEARCHENGINE is set to YES.

-SERVER_BASED_SEARCH    = YES
+SERVER_BASED_SEARCH    = NO

 # When EXTERNAL_SEARCH tag is enabled doxygen will no longer generate the PHP
 # script for searching. Instead the search results are written to an XML file
@@ -1598,7 +1671,7 @@ EXTRA_SEARCH_MAPPINGS  =
 # If the GENERATE_LATEX tag is set to YES, doxygen will generate LaTeX output.
 # The default value is: YES.

-GENERATE_LATEX         = YES
+GENERATE_LATEX         = NO

 # The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. If a
 # relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
@@ -1868,7 +1941,7 @@ MAN_SUBDIR             =
 # The default value is: NO.
 # This tag requires that the tag GENERATE_MAN is set to YES.

-MAN_LINKS              = NOoi9   0
+MAN_LINKS              = NO

 #---------------------------------------------------------------------------
 # Configuration options related to the XML output
@@ -1895,7 +1968,7 @@ XML_OUTPUT             = xml
 # The default value is: YES.
 # This tag requires that the tag GENERATE_XML is set to YES.

-XML_PROGRAMLISTING     = YES
+XML_PROGRAMLISTING     = NO

 #---------------------------------------------------------------------------
 # Configuration options related to the DOCBOOK output
@@ -1991,7 +2064,7 @@ ENABLE_PREPROCESSING   = YES
 # The default value is: NO.
 # This tag requires that the tag ENABLE_PREPROCESSING is set to YES.

-MACRO_EXPANSION        = NO
+MACRO_EXPANSION        = YES

 # If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES then
 # the macro expansion is limited to the macros specified with the PREDEFINED and
@@ -1999,14 +2072,14 @@ MACRO_EXPANSION        = NO
 # The default value is: NO.
 # This tag requires that the tag ENABLE_PREPROCESSING is set to YES.

-EXPAND_ONLY_PREDEF     = NO
+EXPAND_ONLY_PREDEF     = YES

 # If the SEARCH_INCLUDES tag is set to YES, the include files in the
 # INCLUDE_PATH will be searched if a #include is found.
 # The default value is: YES.
 # This tag requires that the tag ENABLE_PREPROCESSING is set to YES.

-SEARCH_INCLUDES        = YES
+SEARCH_INCLUDES        = NO

 # The INCLUDE_PATH tag can be used to specify one or more directories that
 # contain include files that are not input files but should be processed by the
@@ -2014,11 +2087,11 @@ SEARCH_INCLUDES        = YES
 # This tag requires that the tag SEARCH_INCLUDES is set to YES.

 INCLUDE_PATH           = /home/vsc/github/yap-6.3 \
-                        /home/vsc/github/yap-6.3/H \
-                        /home/vsc/github/yap-6.3/H/generated \
-                        /home/vsc/github/yap-6.3/include \
-                        /home/vsc/github/yap-6.3/os \
-                        /home/vsc/github/yap-6.3/OPTYap \
+                         /home/vsc/github/yap-6.3/H \
+                         /home/vsc/github/yap-6.3/H/generated \
+                         /home/vsc/github/yap-6.3/include \
+                         /home/vsc/github/yap-6.3/os \
+                         /home/vsc/github/yap-6.3/OPTYap

 # You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard
 # patterns (like *.h and *.hpp) to filter out the header-files in the
@@ -2036,7 +2109,20 @@ INCLUDE_FILE_PATTERNS  =
 # recursively expanded use the := operator instead of the = operator.
 # This tag requires that the tag ENABLE_PREPROCESSING is set to YES.

-PREDEFINED             =
+PREDEFINED          =
+ YAP_FLAG(ITEM,NAME,WRITABLE,DEF,INIT,HELPER)=ITEM \
+ START_LOCAL_FLAGS="enum THREAD_LOCAL_FLAGS {" \
+ END_LOCAL_FLAGS=" };"\
+ START_GLOBAL_FLAGS="enum GLOBAL_FLAGS {" \
+ END_GLOBAL_FLAGS="};" \
+ LOCAL(A, B)="A B" \
+ LOCAL_INIT(A, B, C)="A B;B = C" \
+ LOCAL_ARRAY(A, B, C)="A B[C]" \
+ LOCAL_ARRAY_ARRAY(A, B, C,D)="A B[C][D]"\
+ LOCAL_INIT(A, B, C, D)="A B[C][D]"\
+ LOCAL_INITF(A, B, C)=" A B; C"\
+ LOCAL_INIT_RESTORE(A,B,C,D)="A B; C; D;"\
+ PREG=Yap_REGS.P_

 # If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then this
 # tag can be used to specify a list of macro names that should be expanded. The
@@ -2045,7 +2131,7 @@ PREDEFINED             =
 # definition found in the source code.
 # This tag requires that the tag ENABLE_PREPROCESSING is set to YES.

-EXPAND_AS_DEFINED      =
+EXPAND_AS_DEFINED      = 

 # If the SKIP_FUNCTION_MACROS tag is set to YES then doxygen's preprocessor will
 # remove all references to function-like macros that are alone on a line, have
@@ -2066,7 +2152,7 @@ SKIP_FUNCTION_MACROS   = YES
 # a tag file without this location is as follows:
 # TAGFILES = file1 file2 ...
 # Adding location for the tag files is done as follows:
-# TAGFILES = file1=loc1 "file2 = loc2" file.
+# TAGFILES = file1=loc1 "file2 = loc2" ...
 # where loc1 and loc2 can be relative or absolute paths or URLs. See the
 # section "Linking to external documentation" for more information about the use
 # of tag files.
@@ -2358,6 +2444,11 @@ DIAFILE_DIRS           =

 PLANTUML_JAR_PATH      =

+# When using plantuml, the PLANTUML_CFG_FILE tag can be used to specify a
+# configuration file for plantuml.
+
+PLANTUML_CFG_FILE      =
+
 # When using plantuml, the specified paths are searched for files specified by
 # the !include statement in a plantuml block.