From 55e2e6fe3a12c6f9352f76bbec017c6543cc9e28 Mon Sep 17 00:00:00 2001 From: Vitor Santos Costa Date: Fri, 20 May 2011 23:56:12 +0100 Subject: [PATCH] small fixes --- packages/CLPBN/clpbn/aggregates.yap | 2 +- packages/CLPBN/clpbn/bp.yap | 2 +- packages/CLPBN/clpbn/graphviz.yap | 2 +- packages/CLPBN/clpbn/table.yap | 2 +- packages/CLPBN/clpbn/vel.yap | 3 ++- packages/CLPBN/learning/em.yap | 6 ++--- .../CLPBN/learning/example/school_params.yap | 22 +++++++++++++++---- 7 files changed, 27 insertions(+), 12 deletions(-) diff --git a/packages/CLPBN/clpbn/aggregates.yap b/packages/CLPBN/clpbn/aggregates.yap index ed83ebb95..3c189756d 100644 --- a/packages/CLPBN/clpbn/aggregates.yap +++ b/packages/CLPBN/clpbn/aggregates.yap @@ -52,7 +52,7 @@ cpt_average(AllVars, Key, Els0, Tab, Vs, NewVs) :- cpt_average(AllVars, Key, Els0, 1.0, Tab, Vs, NewVs). % support variables with evidence from domain. This should make everyone's life easier. -cpt_average([Ev|Vars], Key, Els0, Softness, p(Els0, CPT, NewParents), Vs, NewVs) :- +cpt_average([Ev|Vars], Key, Els0, Softness, pf(Els0, MAT, NewParents), Vs, NewVs) :- find_evidence(Vars, 0, TotEvidence, RVars), build_avg_table(RVars, Vars, Els0, Key, TotEvidence, Softness, MAT0, NewParents0, Vs, IVs), include_qevidence(Ev, MAT0, MAT, NewParents0, NewParents, Vs, IVs, NewVs). diff --git a/packages/CLPBN/clpbn/bp.yap b/packages/CLPBN/clpbn/bp.yap index 34d732453..417958298 100644 --- a/packages/CLPBN/clpbn/bp.yap +++ b/packages/CLPBN/clpbn/bp.yap @@ -93,7 +93,7 @@ vars2ids([V|QueryVars], [VarId|Ids]) :- get_evidence(V, Ev) :- clpbn:get_atts(V, [evidence(Ev)]), !. -get_evidence(V, -1). % no evidence !!! +get_evidence(_V, -1). % no evidence !!! get_extra_vars_info([], []). diff --git a/packages/CLPBN/clpbn/graphviz.yap b/packages/CLPBN/clpbn/graphviz.yap index 6d81cf3da..825fae3a1 100644 --- a/packages/CLPBN/clpbn/graphviz.yap +++ b/packages/CLPBN/clpbn/graphviz.yap @@ -22,7 +22,7 @@ output_var(Stream, V) :- Parents = [_|_], !, format(Stream, ' ',[]), output_parents(Stream, Parents), - format(' -> ',[]), + format(Stream,' -> ',[]), output_key(Stream,Key), nl(Stream). output_var(_, _). diff --git a/packages/CLPBN/clpbn/table.yap b/packages/CLPBN/clpbn/table.yap index 0acd09478..9c07503bc 100644 --- a/packages/CLPBN/clpbn/table.yap +++ b/packages/CLPBN/clpbn/table.yap @@ -96,7 +96,7 @@ clpbn_table(F/N,M) :- Key =.. L1, atom_concat(F, '___tabled', NF), L2 = [_|Args], - S1 =.. [NF|Args], + _S1 =.. [NF|Args], L0 = [_|OArgs], S2 =.. [NF|OArgs], asserta(clpbn_table(S, M, S2)), diff --git a/packages/CLPBN/clpbn/vel.yap b/packages/CLPBN/clpbn/vel.yap index 40940e272..93acbd6e0 100644 --- a/packages/CLPBN/clpbn/vel.yap +++ b/packages/CLPBN/clpbn/vel.yap @@ -97,7 +97,8 @@ run_vel_solver(LVs, LPs, LNVs) :- findall(Ps, solve_vel(LVs, LNVs, Ps), LPs). solve_vel([LVs|_], [NVs0|_], Ps) :- -% length(NVs0, L), (L > 64 -> clpbn_gviz:clpbn2gviz(user_error,sort,NVs0,LVs) ; true ), +% length(NVs0, L), (L > 415 -> clpbn_gviz:clpbn2gviz(user_error,sort,NVs0,LVs) ; true ), +% length(NVs0, L), writeln(+LVs:L), find_all_clpbn_vars(NVs0, NVs0, LV0, LVi, Tables0), sort(LV0, LV), % construct the graph diff --git a/packages/CLPBN/learning/em.yap b/packages/CLPBN/learning/em.yap index d87631a99..234912f3f 100644 --- a/packages/CLPBN/learning/em.yap +++ b/packages/CLPBN/learning/em.yap @@ -11,7 +11,7 @@ [clpbn_init_graph/1, clpbn_init_solver/5, clpbn_run_solver/4, - clpbn_finalize_solver/4, + clpbn_finalize_solver/1, clpbn_flag/2]). :- use_module(library('clpbn/dists'), @@ -92,7 +92,7 @@ init_em(Items, state( AllDists, AllDistInstances, MargVars, SolverVars)) :- em_loop(Its, Likelihood0, State, MaxError, MaxIts, LikelihoodF, FTables) :- estimate(State, LPs), maximise(State, Tables, LPs, Likelihood), - writeln(Likelihood:Its:Likelihood0:Tables), +% writeln(Likelihood:Its:Likelihood0:Tables), ( ( abs((Likelihood - Likelihood0)/Likelihood) < MaxError @@ -207,7 +207,7 @@ compute_parameters([Id-Samples|Dists], [Id-NewTable|Tables], MDistTable, Lik0, empty_dist(Id, Table0), add_samples(Samples, Table0, MDistTable), soften_sample(Table0, SoftenedTable), - matrix:matrix_sum(Table0,TotM), +% matrix:matrix_sum(Table0,TotM), normalise_counts(SoftenedTable, NewTable), compute_likelihood(Table0, NewTable, DeltaLik), dist_new_table(Id, NewTable), diff --git a/packages/CLPBN/learning/example/school_params.yap b/packages/CLPBN/learning/example/school_params.yap index f97119b77..0f45ad190 100644 --- a/packages/CLPBN/learning/example/school_params.yap +++ b/packages/CLPBN/learning/example/school_params.yap @@ -4,13 +4,14 @@ :- [pos:train]. -:- ['~/Yap/work/packages/CLPBN/clpbn/examples/School/school_32']. +:- ['../../examples/School/school_32']. -:- ['~/Yap/work/packages/CLPBN/learning/em']. +:- use_module(library(clpbn/learning/em)). %:- clpbn:set_clpbn_flag(em_solver,gibbs). -:- clpbn:set_clpbn_flag(em_solver,jt). -%:- clpbn:set_clpbn_flag(em_solver,vel). +%:- clpbn:set_clpbn_flag(em_solver,jt). +:- clpbn:set_clpbn_flag(em_solver,vel). +%:- clpbn:set_clpbn_flag(em_solver,bp). timed_main :- statistics(runtime, _), @@ -24,6 +25,19 @@ main :- em(L,0.01,10,CPTs,Lik), writeln(Lik:CPTs). +debug_school :- + graph(L), + em(L,0.01,10,CPTs,Lik), + writeln(Lik:CPTs). + +run_queries([]). +run_queries(Q.L) :- + call(Q), + run_queries(L). + 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+ + % % change to 0.0, 0.1, 0.2 to make things simpler/harder %