Refactor the benchmarks
This commit is contained in:
tacgomes
parent
7fabfcf4c9
commit
7f452d2397
@ -1,5 +1,4 @@
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function prepare_new_run
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{
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YAP=~/bin/$SHORTNAME-$SOLVER
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@ -17,32 +16,33 @@ function prepare_new_run
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function run_solver
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{
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constraint=$1
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echo $LOG_FILE
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CONSTRAINT=$1
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solver_flag=true
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if [ -n "$2" ]; then
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if [ $SOLVER = hve ]; then
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solver_flag=clpbn_horus:set_horus_flag\(elim_heuristic,$2\)
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SOLVER_FLAG=set_horus_flag\(hve_elim_heuristic,$2\)
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elif [ $SOLVER = bp ]; then
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solver_flag=clpbn_horus:set_horus_flag\(schedule,$2\)
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SOLVER_FLAG=set_horus_flag\(bp_msg_schedule,$2\)
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elif [ $SOLVER = cbp ]; then
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solver_flag=clpbn_horus:set_horus_flag\(schedule,$2\)
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SOLVER_FLAG=set_horus_flag\(bp_msg_schedule,$2\)
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elif [ $SOLVER = lbp ]; then
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solver_flag=clpbn_horus:set_horus_flag\(schedule,$2\)
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SOLVER_FLAG=set_horus_flag\(bp_msg_schedule,$2\)
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else
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echo "unknow flag $2"
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fi
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fi
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/usr/bin/time -o $LOG_FILE -a -f "%U\t%S\t%e\t%M" \
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$YAP << EOF >> $LOG_FILE &>> ignore.$LOG_FILE
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$YAP << EOF >> ignore.$LOG_FILE 2>> ignore.$LOG_FILE
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nogc.
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[$NETWORK].
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[$constraint].
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clpbn_horus:set_solver($SOLVER).
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clpbn_horus:set_horus_flag(use_logarithms, true).
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clpbn_horus:set_horus_flag(verbosity, 1).
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$solver_flag.
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[$CONSTRAINT].
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set_solver($SOLVER).
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set_horus_flag(verbosity, 1).
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set_horus_flag(use_logarithms, true).
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$SOLVER_FLAG.
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$QUERY.
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open("$LOG_FILE", 'append', S), format(S, '$constraint ~15+ ', []), close(S).
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open("$LOG_FILE", 'append', S), format(S, "$CONSTRAINT ~15+ ", []), close(S).
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EOF
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}
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@ -52,12 +52,16 @@ function clear_log_files
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{
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rm -f *~
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rm -f ../*~
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rm -f school/*.log school/*~
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rm -f ../school/*.log ../school/*~
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rm -f city/*.log city/*~
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rm -f ../city/*.log ../city/*~
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rm -f workshop_attrs/*.log workshop_attrs/*~
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rm -f ../workshop_attrs/*.log ../workshop_attrs/*~
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rm -f comp_workshops/*.log comp_workshops/*~
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rm -f ../comp_workshops/*.log ../comp_workshops/*~
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rm -f city/*.log city/*~
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rm -f ../city/*.log ../city/*~
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rm -f social_network2/*.log social_network2/*~
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rm -f ../social_network2/*.log ../social_network2/*~
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rm -f social_network2_evidence/*.log social_network2_evidence/*~
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rm -f ../social_network2_evidence/*.log ../social_network2_evidence/*~
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echo all done!
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}
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@ -33,5 +33,5 @@ function run_all_graphs
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}
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prepare_new_run
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run_all_graphs "bp(shedule=seq_fixed) " seq_fixed
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run_all_graphs "bp(bp_msg_shedule=seq_fixed) " seq_fixed
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@ -32,5 +32,5 @@ function run_all_graphs
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}
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prepare_new_run
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run_all_graphs "cbp(shedule=seq_fixed) " seq_fixed
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run_all_graphs "cbp(bp_msg_shedule=seq_fixed) " seq_fixed
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@ -1,6 +1,6 @@
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#!/bin/bash
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NETWORK="'../../examples/city'"
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NETWORK="'../../examples/city.pfl'"
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SHORTNAME="city"
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QUERY="is_joe_guilty(X)"
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@ -19,7 +19,7 @@ main :-
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generate_people(S, N, Counting) :-
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Counting > N, !.
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generate_people(S, N, Counting) :-
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format(S, 'people(p~w, nyc).~n', [Counting]),
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format(S, 'person(p~w, nyc).~n', [Counting]),
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Counting1 is Counting + 1,
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generate_people(S, N, Counting1).
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@ -33,5 +33,5 @@ function run_all_graphs
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}
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prepare_new_run
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run_all_graphs "hve(elim_heuristic=min_neighbors) " min_neighbors
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run_all_graphs "hve(hve_elim_heuristic=min_neighbors) " min_neighbors
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@ -32,5 +32,5 @@ function run_all_graphs
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}
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prepare_new_run
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run_all_graphs "lbp(shedule=seq_fixed) " seq_fixed
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run_all_graphs "lbp(bp_msg_shedule=seq_fixed) " seq_fixed
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@ -27,5 +27,5 @@ function run_all_graphs
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}
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prepare_new_run
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run_all_graphs "bp(shedule=seq_fixed) " seq_fixed
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run_all_graphs "bp(bp_msg_shedule=seq_fixed) " seq_fixed
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@ -26,5 +26,5 @@ function run_all_graphs
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}
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prepare_new_run
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run_all_graphs "cbp(shedule=seq_fixed) " seq_fixed
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run_all_graphs "cbp(bp_msg_shedule=seq_fixed) " seq_fixed
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@ -1,6 +1,6 @@
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#!/bin/bash
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NETWORK="'../../examples/comp_workshops'"
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NETWORK="'../../examples/comp_workshops.pfl'"
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SHORTNAME="cw"
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QUERY="series(X)"
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@ -29,7 +29,7 @@ gen(S, NP, NW, Count) :-
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gen_workshops(_, _, NW, Count) :-
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Count > NW, !.
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gen_workshops(S, P, NW, Count) :-
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format(S, 'c(p~w,w~w).~n', [P,Count]),
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format(S, 'reg(p~w,w~w).~n', [P,Count]),
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Count1 is Count + 1,
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gen_workshops(S, P, NW, Count1).
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@ -26,5 +26,5 @@ function run_all_graphs
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}
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prepare_new_run
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run_all_graphs "hve(elim_heuristic=min_neighbors) " min_neighbors
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run_all_graphs "hve(hve_elim_heuristic=min_neighbors) " min_neighbors
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@ -26,5 +26,5 @@ function run_all_graphs
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}
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prepare_new_run
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run_all_graphs "lbp(shedule=seq_fixed) " seq_fixed
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run_all_graphs "lbp(bp_msg_shedule=seq_fixed) " seq_fixed
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@ -24,7 +24,7 @@ source lbp_tests.sh
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source cbp_tests.sh
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cd ..
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cd smokers
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cd social_network2
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source hve_tests.sh
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source bp_tests.sh
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source lve_tests.sh
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@ -1,95 +1,64 @@
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#!/bin/bash
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#cp ~/bin/yap ~/bin/school_all
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#YAP=~/bin/school_all
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YAP=~/bin/yap
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source ../benchs.sh
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#OUT_FILE_NAME=results`date "+ %H:%M:%S %d-%m-%Y"`.log
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OUT_FILE_NAME=results.log
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rm -f $OUT_FILE_NAME
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rm -f ignore.$OUT_FILE_NAME
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SHORTNAME="school"
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SOLVER="school"
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# yap -g "['../../../../examples/School/sch32'], [missing5], use_module(library(clpbn/learning/em)), graph(L), clpbn:set_clpbn_flag(em_solver,bp), clpbn_horus:set_horus_flag(inf_alg, bp), statistics(runtime, _), em(L,0.01,10,_,Lik), statistics(runtime, [T,_])."
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function run_solver
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function learn_params
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{
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if [ $2 = bp ]
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then
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if [ $4 = ve ]
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then
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extra_flag1=clpbn_horus:set_horus_flag\(inf_alg,$4\)
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extra_flag2=clpbn_horus:set_horus_flag\(elim_heuristic,$5\)
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else
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extra_flag1=clpbn_horus:set_horus_flag\(inf_alg,$4\)
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extra_flag2=clpbn_horus:set_horus_flag\(schedule,$5\)
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fi
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else
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extra_flag1=true
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extra_flag2=true
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fi
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/usr/bin/time -o "$OUT_FILE_NAME" -a -f "real:%E\tuser:%U\tsys:%S" $YAP << EOF &>> "ignore.$OUT_FILE_NAME"
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:- [pos:train].
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:- ['../../../../examples/School/sch32'].
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:- use_module(library(clpbn/learning/em)).
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:- use_module(library(clpbn/bp)).
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[$1].
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NETWORK="'./../../examples/School/school_32'"
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CONSTRAINT=$2
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SOLVER=$1
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echo $NETWORK
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/usr/bin/time -o $LOG_FILE -a -f "%U\t%S\t%e\t%M" \
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$YAP << EOF >> ignore.$LOG_FILE 2>> ignore.$LOG_FILE
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use_module(library(pfl)).
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use_module(library(clpbn/learning/em)).
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[$NETWORK].
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[$CONSTRAINT].
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set_em_solver($SOLVER).
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graph(L),
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clpbn:set_clpbn_flag(em_solver,$2),
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$extra_flag1, $extra_flag2,
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em(L,0.01,10,_,Lik),
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open("$OUT_FILE_NAME", 'append',S),
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format(S, '$3: ~11+ Lik = ~3f, ',[Lik]),
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close(S).
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% em(L, 0.01, 10, _, Lik),
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open("$LOG_FILE", 'append', S),
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format(S, "$CONSTRAINT: ~15+ Lik = ~3f\t", [Lik]),
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close(S).
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EOF
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}
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function run_all_graphs
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{
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echo "************************************************************************" >> "$OUT_FILE_NAME"
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echo "results for solver $2" >> "$OUT_FILE_NAME"
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echo "************************************************************************" >> "$OUT_FILE_NAME"
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run_solver missing5 $1 missing5 $3 $4 $5
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run_solver missing10 $1 missing10 $3 $4 $5
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#run_solver missing20 $1 missing20 $3 $4 $5
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#run_solver missing30 $1 missing30 $3 $4 $5
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#run_solver missing40 $1 missing40 $3 $4 $5
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#run_solver missing50 $1 missing50 $3 $4 $5
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}
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prepare_new_run
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#run_all_graphs bp "hve(min_neighbors) " ve min_neighbors
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#run_all_graphs bp "bp(seq_fixed) " bp seq_fixed
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#run_all_graphs bp "cbp(seq_fixed) " cbp seq_fixed
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exit
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write_header hve
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learn_params hve missing5
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learn_params hve missing10
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learn_params hve missing20
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#learn_params hve missing30
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#learn_params hve missing40
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#learn_params hve missing50
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write_header ve
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learn_params ve missing5
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learn_params ve missing10
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learn_params ve missing20
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#learn_params ve missing30
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#learn_params ve missing40
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#learn_params hve missing50
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run_all_graphs bp "hve(min_neighbors) " ve min_neighbors
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run_all_graphs bp "hve(min_weight) " ve min_weight
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run_all_graphs bp "hve(min_fill) " ve min_fill
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run_all_graphs bp "hve(w_min_fill) " ve weighted_min_fill
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run_all_graphs bp "bp(seq_fixed) " bp seq_fixed
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run_all_graphs bp "bp(max_residual) " bp max_residual
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run_all_graphs bp "cbp(seq_fixed) " cbp seq_fixed
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run_all_graphs bp "cbp(max_residual) " cbp max_residual
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run_all_graphs gibbs "gibbs "
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echo "************************************************************************" >> "$OUT_FILE_NAME"
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echo "results for solver ve" >> "$OUT_FILE_NAME"
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echo "************************************************************************" >> "$OUT_FILE_NAME"
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run_solver missing5 ve missing5 $3 $4 $5
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run_solver missing10 ve missing10 $3 $4 $5
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run_solver missing20 ve missing20 $3 $4 $5
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run_solver missing30 ve missing30 $3 $4 $5
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run_solver missing40 ve missing40 $3 $4 $5
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#run_solver missing50 ve missing50 $3 $4 $5 #+24h!
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echo "************************************************************************" >> "$OUT_FILE_NAME"
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echo "results for solver jt" >> "$OUT_FILE_NAME"
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echo "************************************************************************" >> "$OUT_FILE_NAME"
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run_solver missing5 jt missing5 $3 $4 $5
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run_solver missing10 jt missing10 $3 $4 $5
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run_solver missing20 jt missing20 $3 $4 $5
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#run_solver missing30 jt missing30 $3 $4 $5 #+24h!
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#run_solver missing40 jt missing40 $3 $4 $5 #+24h!
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#run_solver missing50 jt missing50 $3 $4 $5 #+24h!
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exit
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write_header bp
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learn_params bp missing5
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learn_params bp missing10
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learn_params bp missing20
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#learn_params bp missing30
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#learn_params bp missing40
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#learn_params bp missing50
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write_header cbp
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learn_params cbp missing5
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learn_params cbp missing10
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learn_params cbp missing20
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#learn_params cbp missing30
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#learn_params cbp missing40
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#learn_params cbp missing50
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@ -1,8 +0,0 @@
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#!/bin/bash
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NETWORK="'../../examples/social_domain2'"
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SHORTNAME="sm"
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QUERY="query(X)"
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POP=500
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@ -1,6 +1,6 @@
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#!/bin/bash
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source sm.sh
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source sn2.sh
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source ../benchs.sh
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SOLVER="bp"
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@ -26,5 +26,5 @@ function run_all_graphs
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}
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prepare_new_run
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run_all_graphs "bp(shedule=seq_fixed) " seq_fixed
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run_all_graphs "bp(bp_msg_shedule=seq_fixed) " seq_fixed
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@ -1,6 +1,6 @@
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#!/bin/bash
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source sm.sh
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source sn2.sh
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source ../benchs.sh
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SOLVER="cbp"
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@ -26,5 +26,5 @@ function run_all_graphs
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}
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prepare_new_run
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run_all_graphs "cbp(shedule=seq_fixed) " seq_fixed
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run_all_graphs "cbp(bp_msg_shedule=seq_fixed) " seq_fixed
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@ -17,7 +17,7 @@ main :-
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generate_people(S, N, Counting) :-
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Counting > N, !.
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generate_people(S, N, Counting) :-
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format(S, 'people(p~w).~n', [Counting]),
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format(S, 'person(p~w).~n', [Counting]),
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Counting1 is Counting + 1,
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generate_people(S, N, Counting1).
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@ -1,6 +1,6 @@
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#!/bin/bash
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source sm.sh
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source sn2.sh
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source ../benchs.sh
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SOLVER="hve"
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@ -26,8 +26,8 @@ function run_all_graphs
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}
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prepare_new_run
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run_all_graphs "hve(elim_heuristic=min_neighbors) " min_neighbors
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#run_all_graphs "hve(elim_heuristic=min_weight) " min_weight
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#run_all_graphs "hve(elim_heuristic=min_fill) " min_fill
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#run_all_graphs "hve(elim_heuristic=weighted_min_fill) " weighted_min_fill
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run_all_graphs "hve(hve_elim_heuristic=min_neighbors) " min_neighbors
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#run_all_graphs "hve(hve_elim_heuristic=min_weight) " min_weight
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#run_all_graphs "hve(hve_elim_heuristic=min_fill) " min_fill
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#run_all_graphs "hve(hve_elim_heuristic=weighted_min_fill) " weighted_min_fill
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@ -1,6 +1,6 @@
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#!/bin/bash
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source sm.sh
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source sn2.sh
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source ../benchs.sh
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SOLVER="lbp"
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@ -26,5 +26,5 @@ function run_all_graphs
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}
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prepare_new_run
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run_all_graphs "lbp(shedule=seq_fixed) " seq_fixed
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run_all_graphs "lbp(bp_msg_shedule=seq_fixed) " seq_fixed
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@ -1,6 +1,6 @@
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#!/bin/bash
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source sm.sh
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source sn2.sh
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source ../benchs.sh
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SOLVER="lve"
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@ -1,7 +1,7 @@
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#!/bin/bash
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NETWORK="'../../examples/social_domain2'"
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SHORTNAME="sm"
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NETWORK="'../../examples/social_network2.pfl'"
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SHORTNAME="sn2"
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#QUERY="smokes(p1,t), smokes(p2,t), friends(p1,p2,X)"
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QUERY="friends(p1,p2,X)"
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@ -1,6 +1,6 @@
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#!/bin/bash
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source sm.sh
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source sn2ev.sh
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source ../benchs.sh
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SOLVER="bp"
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@ -30,5 +30,5 @@ function run_all_graphs
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}
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prepare_new_run
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run_all_graphs "bp(shedule=seq_fixed) " seq_fixed
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||||
run_all_graphs "bp(bp_msg_shedule=seq_fixed) " seq_fixed
|
||||
|
||||
@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
source sm.sh
|
||||
source sn2ev.sh
|
||||
source ../benchs.sh
|
||||
|
||||
SOLVER="cbp"
|
||||
@ -30,5 +30,5 @@ function run_all_graphs
|
||||
}
|
||||
|
||||
prepare_new_run
|
||||
run_all_graphs "cbp(shedule=seq_fixed) " seq_fixed
|
||||
run_all_graphs "cbp(bp_msg_shedule=seq_fixed) " seq_fixed
|
||||
|
||||
@ -26,7 +26,7 @@ main :-
|
||||
generate_people(S, N, Counting) :-
|
||||
Counting > N, !.
|
||||
generate_people(S, N, Counting) :-
|
||||
format(S, 'people(p~w).~n', [Counting]),
|
||||
format(S, 'person(p~w).~n', [Counting]),
|
||||
Counting1 is Counting + 1,
|
||||
generate_people(S, N, Counting1).
|
||||
|
||||
@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
source sm.sh
|
||||
source sn2ev.sh
|
||||
source ../benchs.sh
|
||||
|
||||
SOLVER="hve"
|
||||
@ -30,8 +30,8 @@ function run_all_graphs
|
||||
}
|
||||
|
||||
prepare_new_run
|
||||
run_all_graphs "hve(elim_heuristic=min_neighbors) " min_neighbors
|
||||
#run_all_graphs "hve(elim_heuristic=min_weight) " min_weight
|
||||
#run_all_graphs "hve(elim_heuristic=min_fill) " min_fill
|
||||
#run_all_graphs "hve(elim_heuristic=weighted_min_fill) " weighted_min_fill
|
||||
run_all_graphs "hve(hve_elim_heuristic=min_neighbors) " min_neighbors
|
||||
#run_all_graphs "hve(hve_elim_heuristic=min_weight) " min_weight
|
||||
#run_all_graphs "hve(hve_elim_heuristic=min_fill) " min_fill
|
||||
#run_all_graphs "hve(hve_elim_heuristic=weighted_min_fill) " weighted_min_fill
|
||||
|
||||
@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
source sm.sh
|
||||
source sn2ev.sh
|
||||
source ../benchs.sh
|
||||
|
||||
SOLVER="lve"
|
||||
8
packages/CLPBN/benchmarks/social_network2_evidence/sn2ev.sh
Executable file
8
packages/CLPBN/benchmarks/social_network2_evidence/sn2ev.sh
Executable file
@ -0,0 +1,8 @@
|
||||
#!/bin/bash
|
||||
|
||||
NETWORK="'../../examples/social_network2.pfl'"
|
||||
SHORTNAME="sn2ev"
|
||||
QUERY="query(X)"
|
||||
|
||||
POP=500
|
||||
|
||||
@ -33,5 +33,5 @@ function run_all_graphs
|
||||
}
|
||||
|
||||
prepare_new_run
|
||||
run_all_graphs "bp(shedule=seq_fixed) " seq_fixed
|
||||
run_all_graphs "bp(bp_msg_shedule=seq_fixed) " seq_fixed
|
||||
|
||||
|
||||
@ -32,5 +32,5 @@ function run_all_graphs
|
||||
}
|
||||
|
||||
prepare_new_run
|
||||
run_all_graphs "cbp(shedule=seq_fixed) " seq_fixed
|
||||
run_all_graphs "cbp(bp_msg_shedule=seq_fixed) " seq_fixed
|
||||
|
||||
|
||||
@ -23,7 +23,7 @@ main :-
|
||||
generate_people(S, N, Counting) :-
|
||||
Counting > N, !.
|
||||
generate_people(S, N, Counting) :-
|
||||
format(S, 'people(p~w).~n', [Counting]),
|
||||
format(S, 'person(p~w).~n', [Counting]),
|
||||
Counting1 is Counting + 1,
|
||||
generate_people(S, N, Counting1).
|
||||
|
||||
@ -31,9 +31,9 @@ generate_people(S, N, Counting) :-
|
||||
generate_attrs(S, N, Counting) :-
|
||||
Counting > N, !.
|
||||
generate_attrs(S, N, Counting) :-
|
||||
%format(S, 'people(p~w).~n', [Counting]),
|
||||
%format(S, 'person(p~w).~n', [Counting]),
|
||||
format(S, 'markov attends(P)::[t,f], attr~w::[t,f]', [Counting]),
|
||||
format(S, '; [0.7, 0.3, 0.3, 0.3] ; [people(P)].~n',[]),
|
||||
format(S, '; [0.7, 0.3, 0.3, 0.3] ; [person(P)].~n',[]),
|
||||
Counting1 is Counting + 1,
|
||||
generate_attrs(S, N, Counting1).
|
||||
|
||||
|
||||
@ -32,5 +32,5 @@ function run_all_graphs
|
||||
}
|
||||
|
||||
prepare_new_run
|
||||
run_all_graphs "hve(elim_heuristic=min_neighbors) " min_neighbors
|
||||
run_all_graphs "hve(hve_elim_heuristic=min_neighbors) " min_neighbors
|
||||
|
||||
|
||||
@ -32,5 +32,5 @@ function run_all_graphs
|
||||
}
|
||||
|
||||
prepare_new_run
|
||||
run_all_graphs "lbp(shedule=seq_fixed) " seq_fixed
|
||||
run_all_graphs "lbp(bp_msg_shedule=seq_fixed) " seq_fixed
|
||||
|
||||
|
||||
@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
NETWORK="'../../examples/workshop_attrs'"
|
||||
NETWORK="'../../examples/workshop_attrs.pfl'"
|
||||
SHORTNAME="wa"
|
||||
QUERY="series(X)"
|
||||
|
||||
|
||||
Reference in New Issue
Block a user