doc support

docs/doxfull.rc

@@ -769,7 +769,7 @@ WARN_LOGFILE =
 # INPUT                  = /Users/vsc/git/yap-6.3/packages/cplint/mcintyre.pl
 #INPUT = /Users/vsc/git/yap-6.3/packages/R/R.pl		
 
-INPUT = foreigns.yap docs/yap.md pl swi C H include os packages library CXX OPTYap
+INPUT = docs/yap.md pl swi C H include os packages library CXX OPTYap
 			 
 
 # This tag can be used to specify the character encoding of the source files

docs/yap.md

@@ -162,11 +162,10 @@ DTAI group of KULeuven. For general information on ProbLog 1 and 2, please see
     
     <http://dtai.cs.kuleuven.be/problog>
 
-+ The real R interface package developed by 	Nicos Angelopoulos,
++ The `real` R interface package developed by 	Nicos Angelopoulos,
 Vítor Santos Costa, João Azevedo, Jan Wielemaker, and Rui Camacho.
-</li>
 
-+ YAP includes the yap2swi library that ports to YAP code from
++ YAP includes the `yap2swi` library that ports to YAP code from
  of SWI's PL interface. This includes the Input/Output Layer, the SWI
  Foreign Language Interface, and the RDF, archive, clib, http, odbc, plunit,
  semweb, sgml, and zlib packages written by Jan Wielemaker. Please do refer to the SWI-Prolog home page:
@@ -804,7 +803,7 @@ will be used:
 
 + @ref YAPOS
 
-+ @ref Database
++ @ref Internal_Database
 
 + @ref Sets
 

library/charsio.yap

@@ -32,7 +32,7 @@
  term_to_atom/2 
     ]).
 
-/** @defgrou CharsIO Operations on Sequences of Codes.
+/** @defgroup CharsIO Operations on Sequences of Codes.
 @ingroup YAPLibrary
 
 Term to sequence of codes conversion, mostly replaced by engine code.

library/dbqueues.yap

@@ -1,4 +1,12 @@
-% A library to implement queues of NB Terms
+/**
+  @defgroup DBQUeue Non-baacktrackable queues in YAP.
+  @ingroup YAPLibrary
+  @{
+  
+A library to implement queues of NB Terms
+
+  @{
+*/
 
 :- module(nbqueue, [
 		    nb_enqueue/2,
@@ -50,3 +58,7 @@ nb_dequeue_all(Ref) :-
 
 nb_dequeue_size(Ref, Size) :-
 	prolog:'$nb_size'(Ref, Size).
+
+/**
+  @}
+*/

library/dbusage.yap

@@ -1,13 +1,12 @@
 
-/** @defgroup DBUsage Memory Usage in Prolog Data-Base
+/**
-@ingroup YAPLibrary
+  @defgroup DBUsage Memory Usage in Prolog Data-Base
-@{
+  @ingroup YAPLibrary
+  @{
 
-This library provides a set of utilities for studying memory usage in YAP.
+  This library provides a set of utilities for studying memory usage in YAP.
-The following routines are available once included with the
+  The following routines are available once included with the
-`use_module(library(dbusage))` command.
+  `use_module(library(dbusage))` command.
-
- 
 */
 
 :- module(dbusage, [
@@ -19,11 +18,7 @@ The following routines are available once included with the
     ]).
 
 /** @pred db_usage 
-
+  Give general overview of data-base usage in the system.
-
-Give general overview of data-base usage in the system.
-
- 
 */
 db_usage :-
 	statistics(heap,[HeapUsed,HeapFree]),
@@ -199,3 +194,6 @@ sumall([p(Cls,CSz,ISz)|LEDAll], TEDCls0, TEDCls, TEDCSz0, TEDCSz, TEDISz0, TEDIS
 	TEDISzI is ISz+TEDISz0,
 	sumall(LEDAll, TEDClsI, TEDCls, TEDCSzI, TEDCSz, TEDISzI, TEDISz).
 
+/**
+  @}
+*/

pl/control.yap

@@ -17,7 +17,7 @@
 
 /** 
 
-@addtogroup YAPControl
+@defgroup YAPControl
 @{
 
 */