debugger

yap4r

packages/ProbLog/problog_lbfgs.yap

@@ -269,16 +269,25 @@ solver_iteration(0).
 %= store the facts with the learned probabilities to a file
 %========================================================================
 
-save_model:-
+save_model(X):-
+    problog_flag(sigmoid_slope,Slope),
 	current_iteration(Iteration),
 	solver_iteration(LBFGSIteration),
 	Id is Iteration*100+LBFGSIteration,
 	create_factprobs_file_name(Id,Filename),
+	retractall( query_probability_intern(_,_)),
+	forall(
+	    user:example(QueryID,_Query,_QueryProb),
+	    (recorded(QueryID,BDD,_),
+	    BDD = bdd(_,_,MapList),
+	    bind_maplist(MapList, Slope, X),
+	    query_probabilities( BDD, BDDProb),
+	    assert( query_probability_intern(QueryID,BDDProb)))
+	),
 	export_facts(Filename).
 
 
 
-
 %========================================================================
 %= find out whether some example IDs are used more than once
 %= if so, complain and stop
@@ -423,8 +432,6 @@ do_learning_intern(Iterations,Epsilon) :-
 	%leash(0),trace,
 	gradient_descent,
 
-	once(save_model),
-	update_values,
 	mse_trainingset,
 	(
 	 last_mse(Last_MSE)
@@ -669,7 +676,6 @@ mse_trainingset :-
 	create_training_predictions_file_name(Iteration,File_Name),
 	open(File_Name, write,Handle),
 	format_learning(2,'MSE_Training ',[]),
-	update_values,
 	findall(t(LogCurrentProb,SquaredError),
 		(user:example(QueryID,Query,TrueQueryProb,_Type),
 		 query_probability(QueryID,CurrentProb),
@@ -714,7 +720,6 @@ mse_testset :-
 	create_test_predictions_file_name(Iteration,File_Name),
   	open(File_Name, write,Handle),
 	format_learning(2,'MSE_Test ',[]),
-	update_values,
 	bb_put(llh_test_queries,0.0),
 	findall(SquaredError,
 		(user:test_example(QueryID,Query,TrueQueryProb,Type),
@@ -902,7 +907,7 @@ user:progress(FX,X,_G,X_Norm,G_Norm,Step,_N, LBFGSIteration,Ls,0) :-
     logger_set_variable(mse_trainingset, FX),
     retractall(solver_iterations(_)),
     assert(solver_iterations(LBFGSIteration)),
-    save_model,
+    save_model(X),
     X0 <== X[0], sigmoid(X0,Slope,P0),
     X1 <== X[1], sigmoid(X1,Slope,P1),
     format('~d. Iteration : (x0,x1)=(~4f,~4f)  f(X)=~4f  |X|=~4f  |X\'|=~4f  Step=~4f  Ls=~4f~n',[LBFGSIteration,P0,P1,FX,X_Norm,G_Norm,Step,Ls]).

packages/python/yap_kernel/CMakeLists.txt

@@ -433,12 +433,14 @@ endforeach()
 
 add_custom_target(YAP_KERNEL ALL
   WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
+   COMMAND ${PYTHON_EXECUTABLE}  ${SETUP_PY} build sdist bdist
  DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/logo-32x32.png ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/logo-64x64.png ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/kernel.js ${CMAKE_CURRENT_BINARY_DIR}/yap_kernel/resources/prolog.js  ${OUTS} YAP4PY
 )
 
 
+set(REAL_SOURCES real.c)
+
     install(CODE "execute_process(
-  COMMAND ${PYTHON_EXECUTABLE}  ${SETUP_PY} build sdist bdist
          COMMAND ${PYTHON_EXECUTABLE} -m pip install ${PYTHON_USER_INSTALL}    --ignore-installed --no-deps  .
         COMMAND ${PYTHON_EXECUTABLE} -m yap_kernel.kernelspec
         ERROR_VARIABLE setupErr

packages/real/CMakeLists.txt

@@ -1,8 +1,6 @@
 
 # PROJECT ( YAP_REAL C )
 
-
-
 set(REAL_SOURCES real.c)
 
 # LIBR_FOUND
@@ -16,6 +14,20 @@ set_package_properties(R PROPERTIES
         DESCRIPTION "The R Project for Statistical Computing."
  
        URL "https://www.r-project.org/")
+
+
+foreach(f ${FILES})
+  add_custom_command(OUTPUT  ${CMAKE_CURRENT_BINARY_DIR}/${f}
+    COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_CURRENT_SOURCE_DIR}/${f} ${CMAKE_CURRENT_BINARY_DIR}/${f}
+    DEPENDS  ${CMAKE_CURRENT_SOURCE_DIR}/${f}
+    )
+  list(APPEND OUTS ${CMAKE_CURRENT_BINARY_DIR}/${f} )
+endforeach()
+
+add_custom_target(YAP4R
+  WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
+ DEPENDS ${OUTS} 
+ )
 add_library(real  ${REAL_SOURCES})
   target_link_libraries (real ${LIBR_LIBRARIES}   libYap)
 include_directories (
@@ -36,6 +48,23 @@ include_directories (
   check_include_files( "Rembedded.h;Rinterface.h" HAVE_R_INTERFACE_H )
 
   configure_file ("rconfig.h.cmake" "rconfig.h" )
+  configure_file ("yap4r/src/Makevars.in" "yap4r/src/Makevars" )
+
+  
+  set(YAP4R_SOURCES
+    yap4r/man/yap4r-package.Rd
+yap4r/R
+yap4r/R/RcppExports.R
+yap4r/NAMESPACE
+yap4r/DESCRIPTION
+yap4r/src
+yap4r/src/Makevars.in
+yap4r/src/yap4r.cpp
+yap4r/src/RcppExports.cpp
+)
+
+
+
 
  install(TARGETS  real
     RUNTIME DESTINATION ${YAP_INSTALL_LIBDIR}

packages/real/yap4r/src/Makevars.in

@@ -1,2 +1,2 @@
-PKG_LIBS=-L/home/vsc/.local/lib/Yap/ -lreal
-PKG_CPPFLAGS=-I../../../../CXX -I../../../../build -I../../../../include -I../../../../H -I../../../../OPTYap -I../../../../os -I../..
+PKG_LIBS=-L${YAP_LIBDIR} -L${YAP_DLLDIR} -L ../../.. -lreal -lYap
+PKG_CPPFLAGS=-I${YAP_SOURCE_DIR}/CXX -I${YAP_BINARY_DIR} -I${YAP_SOURCE_DIR}/include -I${YAP_SOURCE_DIR}/H -I${YAP_SOURCE_DIR}/OPTYap -I${YAP_SOURCE_DIR}/os -I../..

pl/debug.yap

@@ -81,7 +81,7 @@ To start debugging, the user will either call `trace` or spy the
 relevant procedures, entering debug mode, and start execution of the
 program. When finding the first spy-point, YAP's debugger will take
 control and show a message of the form:
-
+v
 ~~~~~
 * (1)  call:  quicksort([1,2,3],_38) ?
 ~~~~~
@@ -167,7 +167,7 @@ the argument, the command fails all the way to the goal. If goal  _GoalId_ has c
 side effects of the goal cannot be undone. This command is not available
 at the call port.  If <tt>f</tt> receives a goal number as the argument, the
 command retries goal  _GoalId_ instead. If goal  _GoalId_ has
-completed execution, YAP fails until meeting the first active ancestor.
+vcompleted execution, YAP fails until meeting the first active ancestor.
 
 + `a` - abort
 
@@ -525,10 +525,10 @@ be lost.
         true
         ),
         /* get goal list		*/
-        '__NB_getval__'('$spy_glist',History,true),
+        '__NB_getval__'('$spy_glist',History,History=[]),
 	H  = [Info|History],
 	Info = info(L,Module,G,_Retry,_Det,_HasFoundAnswers),
-	'__B_setval__'('$spy_glist',H),
+	b_setval('$spy_glist',H),
 	/* and update it		*/
 	'$port'(call,G,Module,L,deterministic, Info).
 
@@ -610,7 +610,10 @@ be lost.
     '$stop_creeping'(_) ,
     current_prolog_flag(debug, true),
     '__NB_getval__'('$debug_status',state(Skip,Border,_,Trace), fail),
-    ( Skip == creep -> true; '$id_goal'(GoalNumber), GoalNumber =< Border),
+    ( Skip == creep -> true;
+      '$stop_creeping'(_) ,
+      '$id_goal'(GoalNumber),
+      GoalNumber =< Border),
     !,
     '__NB_setval__'('$debug_status', state(creep, 0, stop,Trace)),
     '$trace_port_'(Port, GoalNumber, G, Module, Info).
@@ -624,15 +627,18 @@ be lost.
 '$trace_port_'(answer, GoalNumber, G, Module, Info) :-
     '$port'(exit,G,Module,GoalNumber,nondeterministic, Info).
 '$trace_port_'(redo, GoalNumber, G, Module, Info) :-
-    '$port'(redo,G,Module,GoalNumber,nondeterministic, Info), /* inform user_error	*/
-    '$stop_creeping'(_ ).
+    '$stop_creeping'(_ ),
+    '$port'(redo,G,Module,GoalNumber,nondeterministic, Info). /* inform user_error	*/
 '$trace_port_'(fail, GoalNumber, G, Module, Info) :-
+    '$stop_creeping'(_ ),
     '$port'(fail,G,Module,GoalNumber,deterministic, Info). /* inform user_error		*/
 '$trace_port_'(! ,_GoalNumber,_G,_Module,_Imfo) :- /* inform user_error		*/
     !.
 '$trace_port_'(exception(E), GoalNumber, G, Module, Info) :-
+        '$stop_creeping'(_ ),
     '$TraceError'(E, GoalNumber, G, Module, Info).
 '$trace_port_'(external_exception(E), GoalNumber, G, Module, Info) :-
+    '$stop_creeping'(_ ),
     '$TraceError'(E, GoalNumber, G, Module, Info).
 
 
@@ -754,7 +760,7 @@ be lost.
 	'$action'(C,P,CallNumber,G,Module,H).
 '$action'('\n',_,_,_,_,_) :- !,			% newline 	creep
     '__NB_getval__'('$trace',Trace,fail),
-    '__Nb_setval__'('$debug_status', state(creep, 0, stop, Trace)).
+    '__NB_setval__'('$debug_status', state(creep, 0, stop, Trace)).
 '$action'(!,_,_,_,_,_) :- !,			% ! 'g		execute
 	read(debugger_input, G),
 	% don't allow yourself to be caught by creep.
@@ -1075,7 +1081,7 @@ be lost.
 '$debugger_process_meta_arguments'(G, _M, G).
 
 '$ldebugger_process_meta_args'([], _, [], []).
-'$ldebugger_process_meta_args'([G|BGs], M, [N|BMs], ['$user_call'(G1,M1)|BG1s]) :-
+'$ldebugger_process_meta_args'([G|BGs], M, [N|BMs], ['$trace'(M1:G1)|BG1s]) :-
     number(N),
     N >= 0,
 	'$yap_strip_module'( M:G, M1, G1 ),

pl/spy.yap

@@ -68,7 +68,7 @@ mode and the existing spy-points, when the debugger is on.
 	'__NB_setval__'('$if_skip_mode',no_skip),
 	'__NB_setval__'('$spy_glist',[]),
 	'__NB_setval__'('$spy_gn',1),
-	'__NB_setval__'('$debug_state', state(creep,0,stop)).
+	'__NB_setval__'('$debug_state', state(zip,0,stop,off)).
 
 
  % First part : setting and reseting spy points
@@ -221,7 +221,8 @@ debug :-
 	  set_prolog_flag(debug, false)
 	 ),
 	 '__NB_getval__'('$trace',Trace, fail),
-	 '__NB_setval__'('$debug_state',state(creep,0,stop,Trace) ).
+	 ( Trace == on -> Creep = crep; Creep = zip ),
+	 '__NB_setval__'('$debug_state',state(Creep,0,stop,Trace) ).
 
 nodebug :-
 	 '$init_debugger',

pl/top.yap

@@ -1021,7 +1021,7 @@ log_event( String, Args ) :-
 	DBON = true
 	->
 	(
-	    '__NB_getval__'('$debug_status',state(_, _, _,on), fail),
+	    '__NB_getval__'('$debug_status',state(_, _, _, _,on), fail),
 	    (
 		var(LF)
 	    ->