move big doc chunks to md files

also moe icons to docs/

pl/absf.md

@@ -0,0 +1,107 @@
+
+@addtogroup absolute_file_name
+
+@pred absolute_file_name(+File:atom, +Options:list, +Path:atom) is nondet
+@pred absolute_file_name(-File:atom, +Path:atom, +Options:list) is nondet
+
+   _Options_ is a list of options to guide the conversion:
+
+  -  extensions(+ _ListOfExtensions_)
+
+     List of file-name suffixes to add to try adding to the file. The
+     Default is the empty suffix, `''`.  For each extension,
+     absolute_file_name/3 will first add the extension and then verify
+     the conditions imposed by the other options.  If the condition
+     fails, the next extension of the list is tried.  Extensions may
+     be specified both with dot, as `.ext`, or without, as plain
+     `ext`.
+
+  -  relative_to(+ _FileOrDir_ )
+
+     Resolve the path relative to the given directory or directory the
+     holding the given file.  Without this option, paths are resolved
+     relative to the working directory (see working_directory/2) or,
+     if  _Spec_  is atomic and absolute_file_name/3 is executed
+     in a directive, it uses the current source-file as reference.
+
+  -  access(+ _Mode_ )
+
+     Imposes the condition access_file( _File_ ,  _Mode_ ).   _Mode_  is one of `read`, `write`, `append`, `exist` or
+     `none` (default).
+
+     See also access_file/2.
+
+  -  file_type(+ _Type_ )
+
+     Defines suffixes matching one of several pre-specified type of files. Default mapping is as follows:
+
+       1.  `txt` implies `[ '' ]`,
+
+       2.  `prolog` implies `['.yap', '.pl', '.prolog', '']`,
+
+       3.  `executable`  implies `['.so', ',dylib', '.dll']` depending on the Operating system,
+
+       4.  `qly` implies `['.qly', '']`,
+
+       5.  `directory` implies `['']`,
+
+       6.  The file-type `source` is an alias for `prolog` designed to support compatibility with SICStus Prolog. See also prolog_file_type/2.
+
+     Notice that this predicate only
+     returns non-directories, unless the option `file_type(directory)` is
+     specified, or unless `access(none)`.
+
+  -  file_errors(`fail`/`error`)
+
+     If `error` (default), throw  `existence_error` exception
+     if the file cannot be found.  If `fail`, stay silent.
+
+  -  solutions(`first`/`all`)
+
+     If `first` (default), commit to the first solution.  Otherwise
+     absolute_file_name will enumerate all solutions via backtracking.
+
+  -  expand(`true`/`false`)
+
+     If `true` (default is `false`) and _Spec_ is atomic, call
+     expand_file_name/2 followed by member/2 on _Spec_ before
+     proceeding.  This is originally a SWI-Prolog extension, but
+     whereas SWI-Prolog implements its own conventions, YAP uses the
+     shell's `glob` primitive.
+
+  -  glob(`Pattern`)
+
+     If  _Pattern_ is atomic, add the pattern as a suffix to the current expansion, and call
+     expand_file_name/2 followed by member/2 on the result. This is originally  a SICStus Prolog exception.
+
+     Both `glob` and `expand` rely on the same underlying
+     mechanism. YAP gives preference to `glob`.
+
+  -  verbose_file_search(`true`/`false`)
+
+     If `true` (default is `false`) output messages during
+     search. This is often helpful when debugging. Corresponds to the
+     SWI-Prolog flag `verbose_file_search` (also available in YAP).
+
+
+Compatibility considerations to common argument-order in ISO as well
+as SICStus absolute_file_name/3 forced us to be flexible here.
+If the last argument is a list and the second not, the arguments are
+swapped, making the call
+~~~~~~~~~~~prolog
+  absolute_file_name(+ _Spec_ , - _Path_ ,+ _Options_ )
+~~~~~~~~~~~
+  valid as well.
+
+
+@pred user:library_directory(?Directory:atom) is nondet, dynamic
+
+Dynamic, multi-file predicate that succeeds when _Directory_ is a
+current library directory name. Asserted in the user module.
+
+Library directories are the places where files specified in the form
+`library( _File_ )` are searched by the predicates consult/1,
+reconsult/1, use_module/1, ensure_loaded/1, and load_files/2.
+
+This directory is initialized by a rule that calls  the system predicate
+system_library/1.

pl/attributes.md

@@ -27,14 +27,15 @@ work with. Most packages included in YAP that use attributed
 variables, such as CHR, CLP(FD), and CLP(QR), rely on the SWI-Prolog
 interface.
 
-+ @ref Old_Style_Attribute_Declarations
++ @ref attributes
 + @ref New_Style_Attribute_Declarations
 + @ref CohYroutining
++ @ref AttributeVariables_Builtins
 
 @{
 
-@defgroup Old_Style_Attribute_Declarations SICStus Style attribute declarations.
-@ingroup AttributeDeclarations
+@defgroup attributes SICStus Style attribute declarations.
+@ingroup AttributedVariables
 
 The YAP library `atts` implements attribute variables in the style of
 SICStus Prolog. Attributed variables work as follows:

pl/modules.md

@@ -0,0 +1,337 @@
+
+@defgroup YAPModules The YAP Module system
+
+@ingroup consult
+
+  The YAP module system is based on the Quintus/SISCtus module
+system ˜\cite quintus . In this design, modules are named collections of predicates,
+and all predicates belong to a single module. By default, predicates are only
+visible within a module, or _private_ to that module. The module
+may also define a list of predicates that are
+_exported_, that is, visible to other modules.
+
+The main predicates in the module system are:
+
+    * module/2 associates a source file to a module. It has two arguments: the name of the new module, and a list of predicates exported by the module.
+
+    * use_module/1 and use_module/2 can be used to load a module. They take as first argument the source file for the module. Whereas use_module/1 loads all exported predicates, use_module/2 only takes the ones given by the second argument.
+
+YAP pre-defines a number of modules. Most system predicates belong to
+  the module `prolog`. Predicates from the module `prolog` are
+automatically visible to every module.  The `system` module was
+  introduced for SWI-Prolog compatibility, and in YAP mostly acts as an
+alias to `prolog`. The `user` module is also visible to all other modules.
+
+The YAP engine is always associated to a module, the current <em>source
+module</em> or <em>type-in module</em>. By default, all predicates
+read-in and all calls to a goal will be made to predicates visible to
+the current source module, Initially, the source module for YAP is the
+module `user`. Thus Prolog programs that do not define modules will
+operate within the `user` module. In this case, all predicates will be
+visible to all source files.
+
+YAP  includes a number of libraries and packages, most of them
+ defining their own modules. Note that there is no system mechanism to
+ avoid clashes between module names, so it is up to the programmer to
+ carefully choose the names for her own program modules.
+
+The main mechanism to change the current type-in module is by using
+the module/2 declaration.This declaration sets the source module when
+  it starts consulting a file, and resets it at the end.  One can set
+the type-in module permanently by using the built-in `module/1`.
+
+\subsection Explicit Naming
+
+The module system allows one to _explicitly_ specify the source mode for
+a clause by prefixing a clause with its module, say:
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+user:(a :- b).
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+it is also possible to type
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+
+user:a :- user:b.
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+both formulations describe the same clause, independently of the
+current type-in module.
+
+In fact, it is sufficient to specify the source mode for the clause's
+head:
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+user:a :- b.
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+if the current type-in module is `m`, the clause could also be written as:
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+user:a :- m:b.
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+The compiler rewrites the source clauses to ensure that explicit calls
+are respected, and that implicit calls are made to the current source
+module.
+
+A goal should refer to a predicate visible within the current type-in
+module. Thus, if a goal appears in a text file with a module
+declaration, the goal refers to that module's context (but see the
+initialization/1 directive for more details).
+
+Again, one can override this rule by prefixing a goal with a module to
+be consulted. The following query:
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+?- nasa:launch(apollo,13).
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ invokes the goal `launch(apollo,13)` as if the current source
+module was `nasa`.
+
+YAP and other Prolog systems allow the module prefix to see all
+predicates visible in the module, including predicates private to the
+module.  This rule allows maximum flexibility, but it also breaks
+encapsulation and should be used with care. The ciao language proposes
+a different approach to this problem, see \cite DBLP:conf/cl/GrasH00 .
+
+Modules are not always associated with a source-file. They
+may range over several files, by using the
+`include`directive. Moreover, they may not be associated to any source
+file. As an example,
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+?- assert( nasa:launch(apollo,13) ).
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+will create a module `nasa`, if does not already exist. In fact it is
+sufficient to call a predicate from a module to implicitly create the
+module. Hence after this call:
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+?- nasa:launch(apollo,13).
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+there will be a `nasa`module in the system, even if nasa:launch/2 is
+not at all defined.
+
+ \pred use_module( +Files ) is directive
+ loads a module file
+
+This predicate loads the file specified by _Files_, importing all
+their public predicates into the current type-in module. It is
+implemented as if by:
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+use_module(F) :-
+	load_files(F, [if(not_loaded),must_be_module(true)]).
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+Notice that _Files_ may be a single file, or a list with a number
+files. The _Files_  are loaded in YAP only once, even if they have been
+updated meanwhile. YAP should also verify whether the files actually
+define modules. Please consult load_files/3 for other options when
+loading a file.
+
+Predicate name clashes between two different modules may arise, either
+when trying to import predicates that are also defined in the current
+type-in module, or by trying to import the same predicate from two
+different modules.
+
+In the first case, the local predicate is considered to have priority
+and use_module/1 simply gives a warning. As an example, if the file
+`a.pl` contains:
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+:- module( a, [a/1] ).
+
+:- use_module(b).
+
+a(1).
+a(X) :- b(X).
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+and the file `b.pl` contains:
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+:- module( b, [a/1,b/1] ).
+
+a(2).
+
+b(1).
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+YAP will execute as follows:
+
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+?- [a].
+ % consulting .../a.pl...
+  % consulting .../b.pl...
+  % consulted .../b.pl in module b, 0 msec 0 bytes
+ % consulted .../a.pl in module a, 1 msec 0 bytes
+true.
+ ?- a(X).
+X = 1 ? ;
+X = 1.
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+The example shows that the query `a(X)`has a single answer, the one
+defined in `a.pl`. Calls to `a(X)`succeed in the top-level, because
+the module `a` was loaded into `user`. On the other hand, `b(X)`is not
+exported by `a.pl`, and is not available to calls, although it can be
+accessed as a predicate in the module 'a' by using the `:` operator.
+
+Next, consider the three files `c.pl`, `d1.pl`, and `d2.pl`:
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+% c.pl
+:- module( c, [a/1] ).
+
+:- use_module([d1, d2]).
+
+a(X) :-
+	b(X).
+a(X) :-
+	c(X).
+a(X) :-
+   d(X).
+
+% d1.pl
+:- module( d1, [b/1,c/1] ).
+
+b(2).
+c(3).
+
+
+% d2.pl
+:- module( d2, [b/1,d/1] ).
+
+b(1).
+d(4).
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+The result is as follows:
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+./yap -l c
+YAP 6.3.4 (x86_64-darwin13.3.0): Tue Jul 15 10:42:11 CDT 2014
+
+     ERROR!!
+     at line 3 in o/d2.pl,
+     PERMISSION ERROR- loading .../c.pl: modules d1 and d2 both define b/1
+ ?- a(X).
+X = 2 ? ;
+     ERROR!!
+     EXISTENCE ERROR- procedure c/1 is undefined, called from context  prolog:$user_call/2
+                 Goal was c:c(_131290)
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+The state of  the module system after this error is undefined.
+
+@\pred module(+ M:atom,+ L:list ) is directive
+  the current file defines module _M_ with exports _L_. The list may include
+
+  + predicate indicators
+
+  + operator definitions that look like calls to op/3.
+
+The list _L_ may include predicates imported from other modules. If
+you want to fully reexport a module, or a sub-set, also consider reexport/1.
+
+Similar to module/2, this directive defines the file where it
+appears in as a module file; it must be the first declaration in the file.
+ _M_ must be an atom specifying the module name;  _L_ must be a
+list containing the module's public predicates specification, in the
+form `[predicate_name/arity,...]`.
+
+The last argument  _Options_ must be a list of options, which can be:
+     + <b>filename</b>
+       the filename for a module to import into the current module.
+
+     + <b>library( +File )</b>
+       a library file to import into the current module.
+
+     + <b>hide( +Opt)</b>
+        if  _Opt_ is `false`, keep source code for current module, if `true`, disable.
+
+     + <b>export(+PredicateIndicator )</b>
+		Add predicates to the public list of the context module. This implies
+	the predicate will be imported into another module if this module
+	is imported with use_module/1 and use_module/2.
+
+     + <b>export_list(? _Mod_,? _ListOfPredicateIndicator_)</b>
+       The list  _ListOfPredicateIndicator_ contains all predicates
+     	exported by module  _Mod_
+
+Note that predicates are normally exported using the directive
+`module/2`. The `export/1` argumwnt is meant to allow export from
+dynamically created modules. The directive argument may also be a list
+of predicates.
+
+ @pred  use_module(+Files, +Imports)
+  loads a module file but only imports the named predicates
+
+
+This predicate loads the file specified by _Files_, importing their
+public predicates specified by _Imports_ into the current type-in
+module. It is implemented as if by:
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+use_module(Files, Imports) :-
+	load_files(Files, [if(not_loaded),must_be_module(true),imports(Imports)]).
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+The _Imports_ argument may be use to specify which predicates one
+wants to load. It can also be used to give the predicates a different name. As an example,
+the graphs library is implemented on top of the red-black trees library, and some predicates are just aliases:
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{.prolog}
+:- use_module(library(rbtrees), [
+	rb_min/3 as min_assoc,
+	rb_max/3 as max_assoc,
+
+        ...]).
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+Unfortunately it is still not possible to change argument order.
+
+
+\pred module(+ M:atom,+ L:list ) is directive
+  the current file defines module _M_ with exports _L_. The list may include
+
+  + predicate indicators
+
+  + operator definitions that look like calls to op/3.
+
+The list _L_ may include predicates imported from other modules. If
+you want to fully reexport a module, or a sub-set, also consider reexport/1.
+
+Similar to module/2, this directive defines the file where it
+appears in as a module file; it must be the first declaration in the file.
+ _M_ must be an atom specifying the module name;  _L_ must be a
+list containing the module's public predicates specification, in the
+form `[predicate_name/arity,...]`.
+
+The last argument  _Options_ must be a list of options, which can be:
+    +<b>filename</b>
+       the filename for a module to import into the current module.
+
+    + <b>library( +File )</b>
+       a library file to import into the current module.
+
+    + <b>hide( +Opt)</b>
+        if  _Opt_ is `false`, keep source code for current module, if `true`, disable.
+
+    + <b>export(+PredicateIndicator )</b>
+		Add predicates to the public list of the context module. This implies
+	the predicate will be imported into another module if this module
+	is imported with use_module/1 and use_module/2.
+
+    + <b>export_list(? _Mod_,? _ListOfPredicateIndicator_)</b>
+       The list  _ListOfPredicateIndicator_ contains all predicates
+     	exported by module  _Mod_
+
+Note that predicates are normally exported using the directive
+`module/2`. The `export/1` argument is meant to allow export from
+dynamically created modules. The directive argument may also be a list
+of predicates.