update jupyter

packages/python/pyio.c

@@ -40,13 +40,45 @@ static int py_putc(int sno, int ch) {
         return ch;
   }
 #endif
-  char s[2];
+  unsigned char s[2];
   PyObject *err;
   s[0] = ch;
   s[1] = '\0';
   term_t g0 = python_acquire_GIL();
   PyObject_CallMethodObjArgs(st->u.private_data, PyUnicode_FromString("write"),
-                             PyUnicode_FromString(s), NULL);
+                             PyUnicode_FromString((char *)s), NULL);
+  python_release_GIL(g0);
+  if ((err = PyErr_Occurred())) {
+    PyErr_SetString(
+        err,
+        "Error in put\n"); // %s:%s:%d!\n", __FILE__, __FUNCTION__, __LINE__);
+  }
+  return ch;
+}
+
+static int py_wputc(int sno, int ch) {
+  // PyObject *pyw; // buffer
+  // int pyw_kind;
+  // PyObject *pyw_data;
+  StreamDesc *st = YAP_GetStreamFromId(sno);
+#if 0
+  if (false && (st->user_name == TermOutStream || st->user_name == TermErrStream)) {
+     size_t sz = put_utf8(st->u.w_irl.ptr, ch);
+     if (sz > 0) {
+	st->u.w_irl.ptr += sz;
+      if (ch == '\n' ||  st->u.w_irl.ptr - st->u.w_irl.buf > 256)
+	{pyflush(st); }
+     }
+        return ch;
+  }
+#endif
+  unsigned char s[8];
+  PyObject *err;
+  size_t n = put_utf8(s, ch);
+  s[n] = '\0';
+  term_t g0 = python_acquire_GIL();
+  PyObject_CallMethodObjArgs(st->u.private_data, PyUnicode_FromString("write"),
+                             PyUnicode_FromString((char *)s), NULL);
   python_release_GIL(g0);
   if ((err = PyErr_Occurred())) {
     PyErr_SetString(
@@ -84,8 +116,6 @@ static void *py_open(VFS_t *me, const char *name, const char *io_mode,
     st->u.w_irl.ptr = st->u.w_irl.buf = outbuf;
 
 
-
-
 ]\]
     st->user_name = TermOutStream;
   } else if (strcmp(name, "sys.stderr") == 0) {
@@ -127,38 +157,49 @@ static bool py_close(int sno) {
   return true;
 }
 
-
 static bool pygetLine(StreamDesc *rl_iostream, int sno) {
   // term_t ctk = python_acquire_GIL();
   const char *myrl_line;
-  PyObject *user_line;
+  PyObject *user_line, *readl = NULL;
+  PyObject *err;
   StreamDesc *s = YAP_GetStreamFromId(sno);
-  //term_t tg = python_acquire_GIL();
+  // term_t tg = python_acquire_GIL();
-  if (!strcmp(RepAtom(s->name)->StrOfAE,"input") ) {
+  PyObject_Print(s->u.private_data,stderr,0);
-    // note that input may change
+  if (PyFunction_Check( s->u.private_data )) {
-    PyObject *pystream = PyDict_GetItemString( py_Builtin, "input");
+    readl =  s->u.private_data;
-    if (pystream == NULL) {
-      PyObject *err;
-      if ((err = PyErr_Occurred())) {
-	PyErr_Print();
-    Yap_ThrowError(SYSTEM_ERROR_GET_FAILED, YAP_MkIntTerm(sno), err);
-  }
     }
-    user_line = PyObject_CallFunctionObjArgs(pystream, PyUnicode_FromString("?- ") , NULL);
+  if (!strcmp(RepAtom(s->name)->StrOfAE, "user_input")) {
-  } else {    
+    // note that input may change
-  PyObject *readl = PyObject_GetAttrString(s->u.private_data, "readline");
+    readl =  PythonLookupSpecial("input");
-  user_line = PyObject_CallFunction(readl, "?- ");
   }
+  if (readl == NULL) {
+      readl = PythonLookup("readline", s->u.private_data);
+  }
+    if (readl == NULL) {
+      readl = PythonLookup("read", s->u.private_data);
+    }
+    if (readl == NULL) {
+      if ((err = PyErr_Occurred())) {
+        PyErr_Print();
+        Yap_ThrowError(SYSTEM_ERROR_GET_FAILED, YAP_MkIntTerm(sno), NULL);
+      }
+    }
+  user_line = PyObject_CallFunctionObjArgs(readl,
+                                    NULL);
+      if ((err = PyErr_Occurred())) {
+           PyErr_Print();
+      Yap_ThrowError(SYSTEM_ERROR_GET_FAILED, YAP_MkIntTerm(sno), err);
+      }
   myrl_line = PyUnicode_AsUTF8(user_line);
   if (myrl_line == NULL)
     return NULL;
-  PyObject *err;
   if ((err = PyErr_Occurred())) {
 
     if (PyErr_GivenExceptionMatches(err, PyExc_EOFError))
       return NULL;
-    PyErr_SetString(err, "Error in getLine\n");
+        PyErr_Print();
     Yap_ThrowError(SYSTEM_ERROR_GET_FAILED, YAP_MkIntTerm(sno), err);
+
   }
   rl_iostream->u.irl.ptr = rl_iostream->u.irl.buf = (unsigned char *)myrl_line;
   return true;
@@ -182,6 +223,29 @@ static int py_getc(int sno) {
   return ch;
 }
 
+static int py_wgetc(int sno) {
+  StreamDesc *s = YAP_RepStreamFromId(sno);
+  int ch;
+  bool fetch = (s->u.irl.ptr == NULL);
+
+  if (fetch) {
+    if (!pygetLine(s, sno)) {
+      return EOF;
+    }
+  }
+  if (s->u.irl.ptr == NULL)
+    return 10; // ????
+  const unsigned char *ttyptr = s->u.irl.ptr;
+  if (*ttyptr == '\0') {
+    ch = 10;
+    s->u.irl.ptr = NULL;
+  } else {
+    size_t n = get_utf8(ttyptr, strlen((char *)ttyptr), &ch);
+    s->u.irl.ptr += n;
+  }
+  return ch;
+}
+
 /**
   @brief  Yap_ReadlinePeekChar peeks the next char from the
   readline buffer, but does not actually grab it.
@@ -253,8 +317,10 @@ bool init_python_vfs(void) {
   pystream.open = py_open;
   pystream.close = py_close;
   pystream.get_char = py_getc;
+  pystream.get_wchar = py_wgetc;
   pystream.peek_char = py_peek;
   pystream.put_char = py_putc;
+  pystream.put_wchar = py_wputc;
   pystream.flush = py_flush;
   pystream.seek = py_seek;
   pystream.next = GLOBAL_VFS;

packages/python/yap_kernel/yap_ipython/lib/__init__.py

@@ -1,10 +1,10 @@
 # encoding: utf-8
 """
-Extra capabilities for yap_ipython
+Extra capabilities for IPython
 """
 
 #-----------------------------------------------------------------------------
-#  Copyright (C) 2008-2011  The yap_ipython Development Team
+#  Copyright (C) 2008-2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.

packages/python/yap_kernel/yap_ipython/lib/backgroundjobs.py

@@ -15,7 +15,7 @@ Computational Science, by H. P. Langtangen:
 
 http://folk.uio.no/hpl/scripting
 
-(although ultimately no code from this text was used, as yap_ipython's system is a
+(although ultimately no code from this text was used, as IPython's system is a
 separate implementation).
 
 An example notebook is provided in our documentation illustrating interactive

packages/python/yap_kernel/yap_ipython/lib/demo.py

@@ -1,7 +1,7 @@
 """Module for interactive demos using yap_ipython.
 
 This module implements a few classes for running Python scripts interactively
-in yap_ipython for demonstrations.  With very simple markup (a few tags in
+in IPython for demonstrations.  With very simple markup (a few tags in
 comments), you can control points where the script stops executing and returns
 control to yap_ipython.
 
@@ -13,15 +13,15 @@ The classes are (see their docstrings for further details):
 
  - Demo: pure python demos
 
- - IPythonDemo: demos with input to be processed by yap_ipython as if it had been
+ - IPythonDemo: demos with input to be processed by IPython as if it had been
    typed interactively (so magics work, as well as any other special syntax you
    may have added via input prefilters).
 
  - LineDemo: single-line version of the Demo class.  These demos are executed
    one line at a time, and require no markup.
 
- - IPythonLineDemo: yap_ipython version of the LineDemo class (the demo is
+ - IPythonLineDemo: IPython version of the LineDemo class (the demo is
-   executed a line at a time, but processed via yap_ipython).
+   executed a line at a time, but processed via IPython).
 
  - ClearMixin: mixin to make Demo classes with less visual clutter.  It
    declares an empty marquee and a pre_cmd that clears the screen before each
@@ -58,7 +58,7 @@ Operation
 
 The file is run in its own empty namespace (though you can pass it a string of
 arguments as if in a command line environment, and it will see those as
-sys.argv).  But at each stop, the global yap_ipython namespace is updated with the
+sys.argv).  But at each stop, the global IPython namespace is updated with the
 current internal demo namespace, so you can work interactively with the data
 accumulated so far.
 
@@ -72,7 +72,7 @@ The supported tags are:
 
 # <demo> stop
 
-  Defines block boundaries, the points where yap_ipython stops execution of the
+  Defines block boundaries, the points where IPython stops execution of the
   file and returns to the interactive prompt.
 
   You can optionally mark the stop tag with extra dashes before and after the
@@ -120,7 +120,7 @@ and back().  It can be reset for a new run via reset() or reloaded from disk
 
 Note: To make this simpler to explore, a file called "demo-exercizer.py" has
 been added to the "docs/examples/core" directory.  Just cd to this directory in
-an yap_ipython session, and type::
+an IPython session, and type::
 
   %run demo-exercizer.py
 
@@ -134,11 +134,11 @@ The following is a very simple example of a valid demo file.
 ::
 
     #################### EXAMPLE DEMO <ex_demo.py> ###############################
-    '''A simple interactive demo to illustrate the use of yap_ipython's Demo class.'''
+    '''A simple interactive demo to illustrate the use of IPython's Demo class.'''
 
-    print 'Hello, welcome to an interactive yap_ipython demo.'
+    print 'Hello, welcome to an interactive IPython demo.'
 
-    # The mark below defines a block boundary, which is a point where yap_ipython will
+    # The mark below defines a block boundary, which is a point where IPython will
     # stop execution and return to the interactive prompt. The dashes are actually
     # optional and used only as a visual aid to clearly separate blocks while
     # editing the demo code.
@@ -188,7 +188,7 @@ import pygments
 from yap_ipython.utils.text import marquee
 from yap_ipython.utils import openpy
 from yap_ipython.utils import py3compat
-__all__ = ['Demo','IPythonDemo','LineDemo','IPythonLineDemo','DemoError']
+__all__ = ['Demo','yap_ipythonDemo','LineDemo','yap_ipythonLineDemo','DemoError']
 
 class DemoError(Exception): pass
 
@@ -536,10 +536,10 @@ class Demo(object):
 
 
 class IPythonDemo(Demo):
-    """Class for interactive demos with yap_ipython's input processing applied.
+    """Class for interactive demos with IPython's input processing applied.
 
     This subclasses Demo, but instead of executing each block by the Python
-    interpreter (via exec), it actually calls yap_ipython on it, so that any input
+    interpreter (via exec), it actually calls IPython on it, so that any input
     filters which may be in place are applied to the input block.
 
     If you have an interactive environment which exposes special input

packages/python/yap_kernel/yap_ipython/lib/display.py

@@ -2,13 +2,14 @@
 
 Authors : MinRK, gregcaporaso, dannystaple
 """
+from html import escape as html_escape
 from os.path import exists, isfile, splitext, abspath, join, isdir
-from os import walk, sep
+from os import walk, sep, fsdecode
 
-from yap_ipython.core.display import DisplayObject
+from yap_ipython.core.display import DisplayObject, TextDisplayObject
 
 __all__ = ['Audio', 'IFrame', 'YouTubeVideo', 'VimeoVideo', 'ScribdDocument',
-           'FileLink', 'FileLinks']
+           'FileLink', 'FileLinks', 'Code']
 
 
 class Audio(DisplayObject):
@@ -197,7 +198,7 @@ class Audio(DisplayObject):
 
 class IFrame(object):
     """
-    Generic class to embed an iframe in an yap_ipython notebook
+    Generic class to embed an iframe in an IPython notebook
     """
 
     iframe = """
@@ -232,7 +233,7 @@ class IFrame(object):
                                   params=params)
 
 class YouTubeVideo(IFrame):
-    """Class for embedding a YouTube Video in an yap_ipython session, based on its video id.
+    """Class for embedding a YouTube Video in an IPython session, based on its video id.
 
     e.g. to embed the video from https://www.youtube.com/watch?v=foo , you would
     do::
@@ -273,7 +274,7 @@ class YouTubeVideo(IFrame):
 
 class VimeoVideo(IFrame):
     """
-    Class for embedding a Vimeo video in an yap_ipython session, based on its video id.
+    Class for embedding a Vimeo video in an IPython session, based on its video id.
     """
 
     def __init__(self, id, width=400, height=300, **kwargs):
@@ -282,7 +283,7 @@ class VimeoVideo(IFrame):
 
 class ScribdDocument(IFrame):
     """
-    Class for embedding a Scribd document in an yap_ipython session
+    Class for embedding a Scribd document in an IPython session
 
     Use the start_page params to specify a starting point in the document
     Use the view_mode params to specify display type one off scroll | slideshow | book
@@ -297,9 +298,9 @@ class ScribdDocument(IFrame):
         super(ScribdDocument, self).__init__(src, width, height, **kwargs)
 
 class FileLink(object):
-    """Class for embedding a local file link in an yap_ipython session, based on path
+    """Class for embedding a local file link in an IPython session, based on path
 
-    e.g. to embed a link that was generated in the yap_ipython notebook as my/data.txt
+    e.g. to embed a link that was generated in the IPython notebook as my/data.txt
 
     you would do::
 
@@ -334,15 +335,16 @@ class FileLink(object):
         if isdir(path):
             raise ValueError("Cannot display a directory using FileLink. "
               "Use FileLinks to display '%s'." % path)
-        self.path = path
+        self.path = fsdecode(path)
         self.url_prefix = url_prefix
         self.result_html_prefix = result_html_prefix
         self.result_html_suffix = result_html_suffix
 
     def _format_path(self):
-        fp = ''.join([self.url_prefix,self.path])
+        fp = ''.join([self.url_prefix, html_escape(self.path)])
         return ''.join([self.result_html_prefix,
-                        self.html_link_str % (fp, self.path),
+                        self.html_link_str % \
+                            (fp, html_escape(self.path, quote=False)),
                         self.result_html_suffix])
 
     def _repr_html_(self):
@@ -362,9 +364,9 @@ class FileLink(object):
         return abspath(self.path)
 
 class FileLinks(FileLink):
-    """Class for embedding local file links in an yap_ipython session, based on path
+    """Class for embedding local file links in an IPython session, based on path
 
-    e.g. to embed links to files that were generated in the yap_ipython notebook
+    e.g. to embed links to files that were generated in the IPython notebook
     under ``my/data``, you would do::
 
         local_files = FileLinks("my/data")
@@ -424,7 +426,7 @@ class FileLinks(FileLink):
             raise ValueError("Cannot display a file using FileLinks. "
               "Use FileLink to display '%s'." % path)
         self.included_suffixes = included_suffixes
-        # remove trailing slashs for more consistent output formatting
+        # remove trailing slashes for more consistent output formatting
         path = path.rstrip('/')
 
         self.path = path
@@ -555,3 +557,52 @@ class FileLinks(FileLink):
         for dirname, subdirs, fnames in walked_dir:
             result_lines += self.terminal_display_formatter(dirname, fnames, self.included_suffixes)
         return '\n'.join(result_lines)
+
+
+class Code(TextDisplayObject):
+    """Display syntax-highlighted source code.
+
+    This uses Pygments to highlight the code for HTML and Latex output.
+
+    Parameters
+    ----------
+    data : str
+        The code as a string
+    url : str
+        A URL to fetch the code from
+    filename : str
+        A local filename to load the code from
+    language : str
+        The short name of a Pygments lexer to use for highlighting.
+        If not specified, it will guess the lexer based on the filename
+        or the code. Available lexers: http://pygments.org/docs/lexers/
+    """
+    def __init__(self, data=None, url=None, filename=None, language=None):
+        self.language = language
+        super().__init__(data=data, url=url, filename=filename)
+
+    def _get_lexer(self):
+        if self.language:
+            from pygments.lexers import get_lexer_by_name
+            return get_lexer_by_name(self.language)
+        elif self.filename:
+            from pygments.lexers import get_lexer_for_filename
+            return get_lexer_for_filename(self.filename)
+        else:
+            from pygments.lexers import guess_lexer
+            return guess_lexer(self.data)
+
+    def __repr__(self):
+        return self.data
+
+    def _repr_html_(self):
+        from pygments import highlight
+        from pygments.formatters import HtmlFormatter
+        fmt = HtmlFormatter()
+        style = '<style>{}</style>'.format(fmt.get_style_defs('.output_html'))
+        return style + highlight(self.data, self._get_lexer(), fmt)
+
+    def _repr_latex_(self):
+        from pygments import highlight
+        from pygments.formatters import LatexFormatter
+        return highlight(self.data, self._get_lexer(), LatexFormatter())

packages/python/yap_kernel/yap_ipython/lib/editorhooks.py

@@ -11,25 +11,25 @@ import shlex
 import subprocess
 import sys
 
-from yap_ipython import get_ipython
+from IPython import get_ipython
 from yap_ipython.core.error import TryNext
 from yap_ipython.utils import py3compat
 
 
 def install_editor(template, wait=False):
-    """Installs the editor that is called by yap_ipython for the %edit magic.
+    """Installs the editor that is called by IPython for the %edit magic.
 
     This overrides the default editor, which is generally set by your EDITOR
     environment variable or is notepad (windows) or vi (linux). By supplying a
     template string `run_template`, you can control how the editor is invoked
-    by yap_ipython -- (e.g. the format in which it accepts command line options)
+    by IPython -- (e.g. the format in which it accepts command line options)
 
     Parameters
     ----------
     template : basestring
         run_template acts as a template for how your editor is invoked by
         the shell. It should contain '{filename}', which will be replaced on
-        invokation with the file name, and '{line}', $line by line number
+        invocation with the file name, and '{line}', $line by line number
         (or 0) to invoke the file with.
     wait : bool
         If `wait` is true, wait until the user presses enter before returning,

packages/python/yap_kernel/yap_ipython/lib/guisupport.py

@@ -2,26 +2,26 @@
 """
 Support for creating GUI apps and starting event loops.
 
-yap_ipython's GUI integration allows interative plotting and GUI usage in yap_ipython
+IPython's GUI integration allows interactive plotting and GUI usage in IPython
-session. yap_ipython has two different types of GUI integration:
+session. IPython has two different types of GUI integration:
 
-1. The terminal based yap_ipython supports GUI event loops through Python's
+1. The terminal based IPython supports GUI event loops through Python's
    PyOS_InputHook. PyOS_InputHook is a hook that Python calls periodically
    whenever raw_input is waiting for a user to type code. We implement GUI
    support in the terminal by setting PyOS_InputHook to a function that
    iterates the event loop for a short while. It is important to note that
    in this situation, the real GUI event loop is NOT run in the normal
    manner, so you can't use the normal means to detect that it is running.
-2. In the two process yap_ipython kernel/frontend, the GUI event loop is run in
+2. In the two process IPython kernel/frontend, the GUI event loop is run in
    the kernel. In this case, the event loop is run in the normal manner by
    calling the function or method of the GUI toolkit that starts the event
    loop.
 
-In addition to starting the GUI event loops in one of these two ways, yap_ipython
+In addition to starting the GUI event loops in one of these two ways, IPython
 will *always* create an appropriate GUI application object when GUi
 integration is enabled.
 
-If you want your GUI apps to run in yap_ipython you need to do two things:
+If you want your GUI apps to run in IPython you need to do two things:
 
 1. Test to see if there is already an existing main application object. If
    there is, you should use it. If there is not an existing application object
@@ -57,7 +57,7 @@ so you don't have to depend on yap_ipython.
 
 """
 
-# Copyright (c) yap_ipython Development Team.
+# Copyright (c) IPython Development Team.
 # Distributed under the terms of the Modified BSD License.
 
 from yap_ipython.core.getipython import get_ipython

packages/python/yap_kernel/yap_ipython/lib/inputhook.py

@@ -1,11 +1,11 @@
 # coding: utf-8
 """
-Deprecated since yap_ipython 5.0
+Deprecated since IPython 5.0
 
 Inputhook management for GUI event loop integration.
 """
 
-# Copyright (c) yap_ipython Development Team.
+# Copyright (c) IPython Development Team.
 # Distributed under the terms of the Modified BSD License.
 
 try:
@@ -22,7 +22,7 @@ from distutils.version import LooseVersion as V
 from warnings import warn
 
 
-warn("`yap_ipython.lib.inputhook` is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+warn("`yap_ipython.lib.inputhook` is deprecated since IPython 5.0 and will be removed in future versions.",
         DeprecationWarning, stacklevel=2)
 
 
@@ -105,7 +105,7 @@ else:
 
 
 class InputHookManager(object):
-    """DEPRECATED since yap_ipython 5.0
+    """DEPRECATED since IPython 5.0
 
     Manage PyOS_InputHook for different GUI toolkits.
 
@@ -115,7 +115,7 @@ class InputHookManager(object):
     
     def __init__(self):
         if ctypes is None:
-            warn("yap_ipython GUI event loop requires ctypes, %gui will not be available")
+            warn("IPython GUI event loop requires ctypes, %gui will not be available")
         else:
             self.PYFUNC = ctypes.PYFUNCTYPE(ctypes.c_int)
         self.guihooks = {}
@@ -130,23 +130,23 @@ class InputHookManager(object):
         self._current_gui = None
 
     def get_pyos_inputhook(self):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Return the current PyOS_InputHook as a ctypes.c_void_p."""
-        warn("`get_pyos_inputhook` is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("`get_pyos_inputhook` is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         return ctypes.c_void_p.in_dll(ctypes.pythonapi,"PyOS_InputHook")
 
     def get_pyos_inputhook_as_func(self):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Return the current PyOS_InputHook as a ctypes.PYFUNCYPE."""
-        warn("`get_pyos_inputhook_as_func` is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("`get_pyos_inputhook_as_func` is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         return self.PYFUNC.in_dll(ctypes.pythonapi,"PyOS_InputHook")
 
     def set_inputhook(self, callback):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Set PyOS_InputHook to callback and return the previous one."""
         # On platforms with 'readline' support, it's all too likely to
@@ -164,7 +164,7 @@ class InputHookManager(object):
         return original
 
     def clear_inputhook(self, app=None):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Set PyOS_InputHook to NULL and return the previous one.
 
@@ -174,9 +174,9 @@ class InputHookManager(object):
           This parameter is allowed only so that clear_inputhook() can be
           called with a similar interface as all the ``enable_*`` methods.  But
           the actual value of the parameter is ignored.  This uniform interface
-          makes it easier to have user-level entry points in the main yap_ipython
+          makes it easier to have user-level entry points in the main IPython
           app like :meth:`enable_gui`."""
-        warn("`clear_inputhook` is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("`clear_inputhook` is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         pyos_inputhook_ptr = self.get_pyos_inputhook()
         original = self.get_pyos_inputhook_as_func()
@@ -186,9 +186,9 @@ class InputHookManager(object):
         return original
 
     def clear_app_refs(self, gui=None):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
-        Clear yap_ipython's internal reference to an application instance.
+        Clear IPython's internal reference to an application instance.
 
         Whenever we create an app for a user on qt4 or wx, we hold a
         reference to the app.  This is needed because in some cases bad things
@@ -202,7 +202,7 @@ class InputHookManager(object):
             the app for that toolkit.  References are not held for gtk or tk
             as those toolkits don't have the notion of an app.
         """
-        warn("`clear_app_refs` is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("`clear_app_refs` is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         if gui is None:
             self.apps = {}
@@ -210,7 +210,7 @@ class InputHookManager(object):
             del self.apps[gui]
 
     def register(self, toolkitname, *aliases):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Register a class to provide the event loop for a given GUI.
         
@@ -225,7 +225,7 @@ class InputHookManager(object):
                 def enable(self, app=None):
                     ...
         """
-        warn("`register` is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("`register` is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         def decorator(cls):
             if ctypes is not None:
@@ -237,15 +237,15 @@ class InputHookManager(object):
         return decorator
 
     def current_gui(self):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Return a string indicating the currently active GUI or None."""
-        warn("`current_gui` is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("`current_gui` is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         return self._current_gui
 
     def enable_gui(self, gui=None, app=None):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Switch amongst GUI input hooks by name.
 
@@ -271,7 +271,7 @@ class InputHookManager(object):
         PyOS_InputHook wrapper object or the GUI toolkit app created, if there was
         one.
         """
-        warn("`enable_gui` is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("`enable_gui` is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         if gui in (None, GUI_NONE):
             return self.disable_gui()
@@ -293,14 +293,14 @@ class InputHookManager(object):
         return app
 
     def disable_gui(self):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Disable GUI event loop integration.
         
         If an application was registered, this sets its ``_in_event_loop``
         attribute to False. It then calls :meth:`clear_inputhook`.
         """
-        warn("`disable_gui` is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("`disable_gui` is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         gui = self._current_gui
         if gui in self.apps:
@@ -308,7 +308,7 @@ class InputHookManager(object):
         return self.clear_inputhook()
 
 class InputHookBase(object):
-    """DEPRECATED since yap_ipython 5.0
+    """DEPRECATED since IPython 5.0
 
     Base class for input hooks for specific toolkits.
     
@@ -326,17 +326,17 @@ inputhook_manager = InputHookManager()
 
 @inputhook_manager.register('osx')
 class NullInputHook(InputHookBase):
-    """DEPRECATED since yap_ipython 5.0
+    """DEPRECATED since IPython 5.0
 
     A null inputhook that doesn't need to do anything"""
     def enable(self, app=None):
-        warn("This function is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("This function is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
 
 @inputhook_manager.register('wx')
 class WxInputHook(InputHookBase):
     def enable(self, app=None):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Enable event loop integration with wxPython.
 
@@ -359,7 +359,7 @@ class WxInputHook(InputHookBase):
             import wx
             app = wx.App(redirect=False, clearSigInt=False)
         """
-        warn("This function is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("This function is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         import wx
         
@@ -383,13 +383,13 @@ class WxInputHook(InputHookBase):
         return app
 
     def disable(self):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Disable event loop integration with wxPython.
 
         This restores appnapp on OS X
         """
-        warn("This function is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("This function is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         if _use_appnope():
             from appnope import nap
@@ -398,7 +398,7 @@ class WxInputHook(InputHookBase):
 @inputhook_manager.register('qt', 'qt4')
 class Qt4InputHook(InputHookBase):
     def enable(self, app=None):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Enable event loop integration with PyQt4.
         
@@ -421,7 +421,7 @@ class Qt4InputHook(InputHookBase):
             from PyQt4 import QtCore
             app = QtGui.QApplication(sys.argv)
         """
-        warn("This function is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("This function is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         from yap_ipython.lib.inputhookqt4 import create_inputhook_qt4
         app, inputhook_qt4 = create_inputhook_qt4(self.manager, app)
@@ -433,13 +433,13 @@ class Qt4InputHook(InputHookBase):
         return app
 
     def disable_qt4(self):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Disable event loop integration with PyQt4.
 
         This restores appnapp on OS X
         """
-        warn("This function is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("This function is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         if _use_appnope():
             from appnope import nap
@@ -449,7 +449,7 @@ class Qt4InputHook(InputHookBase):
 @inputhook_manager.register('qt5')
 class Qt5InputHook(Qt4InputHook):
     def enable(self, app=None):
-        warn("This function is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("This function is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         os.environ['QT_API'] = 'pyqt5'
         return Qt4InputHook.enable(self, app)
@@ -458,7 +458,7 @@ class Qt5InputHook(Qt4InputHook):
 @inputhook_manager.register('gtk')
 class GtkInputHook(InputHookBase):
     def enable(self, app=None):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Enable event loop integration with PyGTK.
 
@@ -475,7 +475,7 @@ class GtkInputHook(InputHookBase):
         the PyGTK to integrate with terminal based applications like
         yap_ipython.
         """
-        warn("This function is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("This function is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         import gtk
         try:
@@ -489,7 +489,7 @@ class GtkInputHook(InputHookBase):
 @inputhook_manager.register('tk')
 class TkInputHook(InputHookBase):
     def enable(self, app=None):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Enable event loop integration with Tk.
 
@@ -506,7 +506,7 @@ class TkInputHook(InputHookBase):
         :class:`InputHookManager`, since creating that object automatically
         sets ``PyOS_InputHook``.
         """
-        warn("This function is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("This function is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         if app is None:
             try:
@@ -522,7 +522,7 @@ class TkInputHook(InputHookBase):
 @inputhook_manager.register('glut')
 class GlutInputHook(InputHookBase):
     def enable(self, app=None):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Enable event loop integration with GLUT.
 
@@ -547,7 +547,7 @@ class GlutInputHook(InputHookBase):
         The default screen mode is set to:
         glut.GLUT_DOUBLE | glut.GLUT_RGBA | glut.GLUT_DEPTH
         """
-        warn("This function is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("This function is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
 
         import OpenGL.GLUT as glut
@@ -576,7 +576,7 @@ class GlutInputHook(InputHookBase):
 
 
     def disable(self):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Disable event loop integration with glut.
         
@@ -584,7 +584,7 @@ class GlutInputHook(InputHookBase):
         dummy one and set the timer to a dummy timer that will be triggered
         very far in the future.
         """
-        warn("This function is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("This function is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         import OpenGL.GLUT as glut
         from glut_support import glutMainLoopEvent
@@ -596,7 +596,7 @@ class GlutInputHook(InputHookBase):
 @inputhook_manager.register('pyglet')
 class PygletInputHook(InputHookBase):
     def enable(self, app=None):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Enable event loop integration with pyglet.
 
@@ -614,7 +614,7 @@ class PygletInputHook(InputHookBase):
         yap_ipython.
 
         """
-        warn("This function is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("This function is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         from yap_ipython.lib.inputhookpyglet import inputhook_pyglet
         self.manager.set_inputhook(inputhook_pyglet)
@@ -624,7 +624,7 @@ class PygletInputHook(InputHookBase):
 @inputhook_manager.register('gtk3')
 class Gtk3InputHook(InputHookBase):
     def enable(self, app=None):
-        """DEPRECATED since yap_ipython 5.0
+        """DEPRECATED since IPython 5.0
 
         Enable event loop integration with Gtk3 (gir bindings).
 
@@ -641,7 +641,7 @@ class Gtk3InputHook(InputHookBase):
         the Gtk3 to integrate with terminal based applications like
         yap_ipython.
         """
-        warn("This function is deprecated since yap_ipython 5.0 and will be removed in future versions.",
+        warn("This function is deprecated since IPython 5.0 and will be removed in future versions.",
                 DeprecationWarning, stacklevel=2)
         from yap_ipython.lib.inputhookgtk3 import inputhook_gtk3
         self.manager.set_inputhook(inputhook_gtk3)
@@ -658,7 +658,7 @@ guis = inputhook_manager.guihooks
 
 
 def _deprecated_disable():
-    warn("This function is deprecated since yap_ipython 4.0 use disable_gui() instead",
+    warn("This function is deprecated since IPython 4.0 use disable_gui() instead",
             DeprecationWarning, stacklevel=2)
     inputhook_manager.disable_gui()
     

packages/python/yap_kernel/yap_ipython/lib/inputhookglut.py

@@ -4,14 +4,14 @@ GLUT Inputhook support functions
 """
 
 #-----------------------------------------------------------------------------
-#  Copyright (C) 2008-2011  The yap_ipython Development Team
+#  Copyright (C) 2008-2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
 #-----------------------------------------------------------------------------
 
 # GLUT is quite an old library and it is difficult to ensure proper
-# integration within yap_ipython since original GLUT does not allow to handle
+# integration within IPython since original GLUT does not allow to handle
 # events one by one. Instead, it requires for the mainloop to be entered
 # and never returned (there is not even a function to exit he
 # mainloop). Fortunately, there are alternatives such as freeglut
@@ -24,7 +24,7 @@ GLUT Inputhook support functions
 # being first created. We choose to make this window invisible. This means that
 # display mode options are set at this level and user won't be able to change
 # them later without modifying the code. This should probably be made available
-# via yap_ipython options system.
+# via IPython options system.
 
 #-----------------------------------------------------------------------------
 # Imports
@@ -42,12 +42,12 @@ from timeit import default_timer as clock
 #-----------------------------------------------------------------------------
 
 # Frame per second : 60
-# Should probably be an yap_ipython option
+# Should probably be an IPython option
 glut_fps = 60
 
 
 # Display mode : double buffeed + rgba + depth
-# Should probably be an yap_ipython option
+# Should probably be an IPython option
 glut_display_mode = (glut.GLUT_DOUBLE |
                      glut.GLUT_RGBA   |
                      glut.GLUT_DEPTH)
@@ -112,7 +112,7 @@ def glut_close():
     glutMainLoopEvent()
 
 def glut_int_handler(signum, frame):
-    # Catch sigint and print the defautl message
+    # Catch sigint and print the default message
     signal.signal(signal.SIGINT, signal.default_int_handler)
     print('\nKeyboardInterrupt')
     # Need to reprint the prompt at this stage
@@ -130,7 +130,7 @@ def inputhook_glut():
     needed, otherwise, CPU usage is at 100%.  This sleep time should be tuned
     though for best performance.
     """
-    # We need to protect against a user pressing Control-C when yap_ipython is
+    # We need to protect against a user pressing Control-C when IPython is
     # idle and this is running. We trap KeyboardInterrupt and pass.
 
     signal.signal(signal.SIGINT, glut_int_handler)

packages/python/yap_kernel/yap_ipython/lib/inputhookgtk.py

@@ -6,7 +6,7 @@ Authors: Brian Granger
 """
 
 #-----------------------------------------------------------------------------
-#  Copyright (C) 2008-2011  The yap_ipython Development Team
+#  Copyright (C) 2008-2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.

packages/python/yap_kernel/yap_ipython/lib/inputhookgtk3.py

@@ -5,7 +5,7 @@ Enable Gtk3 to be used interacive by yap_ipython.
 Authors: Thomi Richards
 """
 #-----------------------------------------------------------------------------
-# Copyright (c) 2012, the yap_ipython Development Team.
+# Copyright (c) 2012, the IPython Development Team.
 #
 # Distributed under the terms of the Modified BSD License.
 #

packages/python/yap_kernel/yap_ipython/lib/inputhookpyglet.py

@@ -10,7 +10,7 @@ Authors
 """
 
 #-----------------------------------------------------------------------------
-#  Copyright (C) 2008-2011  The yap_ipython Development Team
+#  Copyright (C) 2008-2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
@@ -73,7 +73,7 @@ def inputhook_pyglet():
     needed, otherwise, CPU usage is at 100%.  This sleep time should be tuned
     though for best performance.
     """
-    # We need to protect against a user pressing Control-C when yap_ipython is
+    # We need to protect against a user pressing Control-C when IPython is
     # idle and this is running. We trap KeyboardInterrupt and pass.
     try:
         t = clock()

packages/python/yap_kernel/yap_ipython/lib/inputhookqt4.py

@@ -6,7 +6,7 @@ Author: Christian Boos
 """
 
 #-----------------------------------------------------------------------------
-#  Copyright (C) 2011  The yap_ipython Development Team
+#  Copyright (C) 2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.

packages/python/yap_kernel/yap_ipython/lib/inputhookwx.py

@@ -7,7 +7,7 @@ Authors:  Robin Dunn, Brian Granger, Ondrej Certik
 """
 
 #-----------------------------------------------------------------------------
-#  Copyright (C) 2008-2011  The yap_ipython Development Team
+#  Copyright (C) 2008-2011  The IPython Development Team
 #
 #  Distributed under the terms of the BSD License.  The full license is in
 #  the file COPYING, distributed as part of this software.
@@ -110,7 +110,7 @@ def inputhook_wx3():
     time.sleep is inserted.  This is needed, otherwise, CPU usage is at 100%.
     This sleep time should be tuned though for best performance.
     """
-    # We need to protect against a user pressing Control-C when yap_ipython is
+    # We need to protect against a user pressing Control-C when IPython is
     # idle and this is running. We trap KeyboardInterrupt and pass.
     try:
         app = wx.GetApp()

packages/python/yap_kernel/yap_ipython/lib/kernel.py

@@ -4,10 +4,10 @@ Moved to yap_ipython.kernel.connect
 """
 
 import warnings
-warnings.warn("yap_ipython.lib.kernel moved to yap_ipython.kernel.connect in yap_ipython 1.0," 
+warnings.warn("yap_ipython.lib.kernel moved to yap_ipython.kernel.connect in IPython 1.0," 
-        " and will be removed in yap_ipython 6.0.",
+        " and will be removed in IPython 6.0.",
     DeprecationWarning
 )
 
-from yap_kernel.connect import *
+from ipykernel.connect import *
 

packages/python/yap_kernel/yap_ipython/lib/latextools.py

@@ -1,7 +1,7 @@
 # -*- coding: utf-8 -*-
 """Tools for handling LaTeX."""
 
-# Copyright (c) yap_ipython Development Team.
+# Copyright (c) IPython Development Team.
 # Distributed under the terms of the Modified BSD License.
 
 from io import BytesIO, open

packages/python/yap_kernel/yap_ipython/lib/lexers.py

@@ -1,29 +1,29 @@
 # -*- coding: utf-8 -*-
 """
-Defines a variety of Pygments lexers for highlighting yap_ipython code.
+Defines a variety of Pygments lexers for highlighting IPython code.
 
 This includes:
 
     IPythonLexer, IPython3Lexer
-        Lexers for pure yap_ipython (python + magic/shell commands)
+        Lexers for pure IPython (python + magic/shell commands)
 
     IPythonPartialTracebackLexer, IPythonTracebackLexer
         Supports 2.x and 3.x via keyword `python3`.  The partial traceback
         lexer reads everything but the Python code appearing in a traceback.
-        The full lexer combines the partial lexer with an yap_ipython lexer.
+        The full lexer combines the partial lexer with an IPython lexer.
 
     IPythonConsoleLexer
-        A lexer for yap_ipython console sessions, with support for tracebacks.
+        A lexer for IPython console sessions, with support for tracebacks.
 
     IPyLexer
         A friendly lexer which examines the first line of text and from it,
-        decides whether to use an yap_ipython lexer or an yap_ipython console lexer.
+        decides whether to use an IPython lexer or an IPython console lexer.
         This is probably the only lexer that needs to be explicitly added
         to Pygments.
 
 """
 #-----------------------------------------------------------------------------
-# Copyright (c) 2013, the yap_ipython Development Team.
+# Copyright (c) 2013, the IPython Development Team.
 #
 # Distributed under the terms of the Modified BSD License.
 #
@@ -34,7 +34,9 @@ This includes:
 import re
 
 # Third party
-from pygments.lexers import BashLexer, PythonLexer, Python3Lexer
+from pygments.lexers import (
+    BashLexer, HtmlLexer, JavascriptLexer, RubyLexer, PerlLexer, PythonLexer,
+    Python3Lexer, TexLexer)
 from pygments.lexer import (
     Lexer, DelegatingLexer, RegexLexer, do_insertions, bygroups, using,
 )
@@ -51,36 +53,23 @@ __all__ = ['build_ipy_lexer', 'IPython3Lexer', 'IPythonLexer',
            'IPythonPartialTracebackLexer', 'IPythonTracebackLexer',
            'IPythonConsoleLexer', 'IPyLexer']
 
-ipython_tokens = [
-  (r"(?s)(\s*)(%%)(\w+)(.*)", bygroups(Text, Operator, Keyword, Text)),
-  (r'(?s)(^\s*)(%%!)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(BashLexer))),
-  (r"(%%?)(\w+)(\?\??)$",  bygroups(Operator, Keyword, Operator)),
-  (r"\b(\?\??)(\s*)$",  bygroups(Operator, Text)),
-  (r'(%)(sx|sc|system)(.*)(\n)', bygroups(Operator, Keyword,
-                                       using(BashLexer), Text)),
-  (r'(%)(\w+)(.*\n)', bygroups(Operator, Keyword, Text)),
-  (r'^(!!)(.+)(\n)', bygroups(Operator, using(BashLexer), Text)),
-  (r'(!)(?!=)(.+)(\n)', bygroups(Operator, using(BashLexer), Text)),
-  (r'^(\s*)(\?\??)(\s*%{0,2}[\w\.\*]*)', bygroups(Text, Operator, Text)),
-  (r'(\s*%{0,2}[\w\.\*]*)(\?\??)(\s*)$', bygroups(Text, Operator, Text)),
-]
 
 def build_ipy_lexer(python3):
-    """Builds yap_ipython lexers depending on the value of `python3`.
+    """Builds IPython lexers depending on the value of `python3`.
 
     The lexer inherits from an appropriate Python lexer and then adds
-    information about yap_ipython specific keywords (i.e. magic commands,
+    information about IPython specific keywords (i.e. magic commands,
     shell commands, etc.)
 
     Parameters
     ----------
     python3 : bool
-        If `True`, then build an yap_ipython lexer from a Python 3 lexer.
+        If `True`, then build an IPython lexer from a Python 3 lexer.
 
     """
-    # It would be nice to have a single yap_ipython lexer class which takes
+    # It would be nice to have a single IPython lexer class which takes
     # a boolean `python3`.  But since there are two Python lexer classes,
-    # we will also have two yap_ipython lexer classes.
+    # we will also have two IPython lexer classes.
     if python3:
         PyLexer = Python3Lexer
         name = 'IPython3'
@@ -88,9 +77,39 @@ def build_ipy_lexer(python3):
         doc = """IPython3 Lexer"""
     else:
         PyLexer = PythonLexer
-        name = 'yap_ipython'
+        name = 'IPython'
         aliases = ['ipython2', 'ipython']
-        doc = """yap_ipython Lexer"""
+        doc = """IPython Lexer"""
+
+    ipython_tokens = [
+       (r'(?s)(\s*)(%%capture)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(PyLexer))),
+        (r'(?s)(\s*)(%%debug)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(PyLexer))),
+        (r'(?is)(\s*)(%%html)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(HtmlLexer))),
+        (r'(?s)(\s*)(%%javascript)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(JavascriptLexer))),
+        (r'(?s)(\s*)(%%js)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(JavascriptLexer))),
+        (r'(?s)(\s*)(%%latex)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(TexLexer))),
+        (r'(?s)(\s*)(%%pypy)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(PerlLexer))),
+        (r'(?s)(\s*)(%%prun)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(PyLexer))),
+        (r'(?s)(\s*)(%%pypy)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(PyLexer))),
+        (r'(?s)(\s*)(%%python)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(PyLexer))),
+        (r'(?s)(\s*)(%%python2)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(PythonLexer))),
+        (r'(?s)(\s*)(%%python3)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(Python3Lexer))),
+        (r'(?s)(\s*)(%%ruby)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(RubyLexer))),
+        (r'(?s)(\s*)(%%time)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(PyLexer))),
+        (r'(?s)(\s*)(%%timeit)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(PyLexer))),
+        (r'(?s)(\s*)(%%writefile)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(PyLexer))),
+        (r"(?s)(\s*)(%%)(\w+)(.*)", bygroups(Text, Operator, Keyword, Text)),
+        (r'(?s)(^\s*)(%%!)([^\n]*\n)(.*)', bygroups(Text, Operator, Text, using(BashLexer))),
+        (r"(%%?)(\w+)(\?\??)$",  bygroups(Operator, Keyword, Operator)),
+        (r"\b(\?\??)(\s*)$",  bygroups(Operator, Text)),
+        (r'(%)(sx|sc|system)(.*)(\n)', bygroups(Operator, Keyword,
+                                                using(BashLexer), Text)),
+        (r'(%)(\w+)(.*\n)', bygroups(Operator, Keyword, Text)),
+        (r'^(!!)(.+)(\n)', bygroups(Operator, using(BashLexer), Text)),
+        (r'(!)(?!=)(.+)(\n)', bygroups(Operator, using(BashLexer), Text)),
+        (r'^(\s*)(\?\??)(\s*%{0,2}[\w\.\*]*)', bygroups(Text, Operator, Text)),
+        (r'(\s*%{0,2}[\w\.\*]*)(\?\??)(\s*)$', bygroups(Text, Operator, Text)),
+    ]
 
     tokens = PyLexer.tokens.copy()
     tokens['root'] = ipython_tokens + tokens['root']
@@ -107,12 +126,12 @@ IPythonLexer = build_ipy_lexer(python3=False)
 
 class IPythonPartialTracebackLexer(RegexLexer):
     """
-    Partial lexer for yap_ipython tracebacks.
+    Partial lexer for IPython tracebacks.
 
     Handles all the non-python output. This works for both Python 2.x and 3.x.
 
     """
-    name = 'yap_ipython Partial Traceback'
+    name = 'IPython Partial Traceback'
 
     tokens = {
         'root': [
@@ -156,7 +175,7 @@ class IPythonPartialTracebackLexer(RegexLexer):
 
 class IPythonTracebackLexer(DelegatingLexer):
     """
-    yap_ipython traceback lexer.
+    IPython traceback lexer.
 
     For doctests, the tracebacks can be snipped as much as desired with the
     exception to the lines that designate a traceback. For non-syntax error
@@ -165,12 +184,12 @@ class IPythonTracebackLexer(DelegatingLexer):
 
     """
     # The lexer inherits from DelegatingLexer.  The "root" lexer is an
-    # appropriate yap_ipython lexer, which depends on the value of the boolean
+    # appropriate IPython lexer, which depends on the value of the boolean
-    # `python3`.  First, we parse with the partial yap_ipython traceback lexer.
+    # `python3`.  First, we parse with the partial IPython traceback lexer.
     # Then, any code marked with the "Other" token is delegated to the root
     # lexer.
     #
-    name = 'yap_ipython Traceback'
+    name = 'IPython Traceback'
     aliases = ['ipythontb']
 
     def __init__(self, **options):
@@ -190,7 +209,7 @@ class IPythonTracebackLexer(DelegatingLexer):
 
 class IPythonConsoleLexer(Lexer):
     """
-    An yap_ipython console lexer for yap_ipython code-blocks and doctests, such as:
+    An IPython console lexer for IPython code-blocks and doctests, such as:
 
     .. code-block:: rst
 
@@ -207,7 +226,7 @@ class IPythonConsoleLexer(Lexer):
             In [4]: 1 / 0
 
 
-    Support is also provided for yap_ipython exceptions:
+    Support is also provided for IPython exceptions:
 
     .. code-block:: rst
 
@@ -217,18 +236,18 @@ class IPythonConsoleLexer(Lexer):
 
             ---------------------------------------------------------------------------
             Exception                                 Traceback (most recent call last)
-            <ipython-input-1-fca2ab0ca76b> in <module>()
+            <ipython-input-1-fca2ab0ca76b> in <module>
             ----> 1 raise Exception
 
             Exception:
 
     """
-    name = 'yap_ipython console session'
+    name = 'IPython console session'
     aliases = ['ipythonconsole']
     mimetypes = ['text/x-ipython-console']
 
     # The regexps used to determine what is input and what is output.
-    # The default prompts for yap_ipython are:
+    # The default prompts for IPython are:
     #
     #    in           = 'In [#]: '
     #    continuation = '   .D.: '
@@ -245,7 +264,7 @@ class IPythonConsoleLexer(Lexer):
     ipytb_start = re.compile(r'^(\^C)?(-+\n)|^(  File)(.*)(, line )(\d+\n)')
 
     def __init__(self, **options):
-        """Initialize the yap_ipython console lexer.
+        """Initialize the IPython console lexer.
 
         Parameters
         ----------
@@ -254,12 +273,12 @@ class IPythonConsoleLexer(Lexer):
             lexer. Otherwise, they are parsed using a Python 2 lexer.
         in1_regex : RegexObject
             The compiled regular expression used to detect the start
-            of inputs. Although the yap_ipython configuration setting may have a
+            of inputs. Although the IPython configuration setting may have a
             trailing whitespace, do not include it in the regex. If `None`,
             then the default input prompt is assumed.
         in2_regex : RegexObject
             The compiled regular expression used to detect the continuation
-            of inputs. Although the yap_ipython configuration setting may have a
+            of inputs. Although the IPython configuration setting may have a
             trailing whitespace, do not include it in the regex. If `None`,
             then the default input prompt is assumed.
         out_regex : RegexObject
@@ -475,11 +494,11 @@ class IPythonConsoleLexer(Lexer):
 
 class IPyLexer(Lexer):
     """
-    Primary lexer for all yap_ipython-like code.
+    Primary lexer for all IPython-like code.
 
     This is a simple helper lexer.  If the first line of the text begins with
-    "In \[[0-9]+\]:", then the entire text is parsed with an yap_ipython console
+    "In \[[0-9]+\]:", then the entire text is parsed with an IPython console
-    lexer. If not, then the entire text is parsed with an yap_ipython lexer.
+    lexer. If not, then the entire text is parsed with an IPython lexer.
 
     The goal is to reduce the number of lexers that are registered
     with Pygments.

packages/python/yap_kernel/yap_ipython/lib/pretty.py

@@ -77,11 +77,13 @@ Inheritance diagram:
             Portions (c) 2009 by Robert Kern.
 :license: BSD License.
 """
+
 from contextlib import contextmanager
+import datetime
+import os
+import re
 import sys
 import types
-import re
-import datetime
 from collections import deque
 from io import StringIO
 from warnings import warn
@@ -95,6 +97,9 @@ __all__ = ['pretty', 'pprint', 'PrettyPrinter', 'RepresentationPrinter',
 
 
 MAX_SEQ_LENGTH = 1000
+# The language spec says that dicts preserve order from 3.7, but CPython
+# does so from 3.6, so it seems likely that people will expect that.
+DICT_IS_ORDERED = sys.version_info >= (3, 6)
 _re_pattern_type = type(re.compile(''))
 
 def _safe_getattr(obj, attr, default=None):
@@ -112,7 +117,7 @@ def _safe_getattr(obj, attr, default=None):
 class CUnicodeIO(StringIO):
     def __init__(self, *args, **kwargs):
         super().__init__(*args, **kwargs)
-        warn(("CUnicodeIO is deprecated since yap_ipython 6.0. "
+        warn(("CUnicodeIO is deprecated since IPython 6.0. "
               "Please use io.StringIO instead."),
              DeprecationWarning, stacklevel=2)
 
@@ -392,6 +397,10 @@ class RepresentationPrinter(PrettyPrinter):
                             meth = cls._repr_pretty_
                             if callable(meth):
                                 return meth(obj, self, cycle)
+                        if cls is not object \
+                                and callable(cls.__dict__.get('__repr__')):
+                            return _repr_pprint(obj, self, cycle)
+
             return _default_pprint(obj, self, cycle)
         finally:
             self.end_group()
@@ -537,17 +546,12 @@ def _default_pprint(obj, p, cycle):
     p.end_group(1, '>')
 
 
-def _seq_pprinter_factory(start, end, basetype):
+def _seq_pprinter_factory(start, end):
     """
     Factory that returns a pprint function useful for sequences.  Used by
     the default pprint for tuples, dicts, and lists.
     """
     def inner(obj, p, cycle):
-        typ = type(obj)
-        if basetype is not None and typ is not basetype and typ.__repr__ != basetype.__repr__:
-            # If the subclass provides its own repr, use it instead.
-            return p.text(typ.__repr__(obj))
-
         if cycle:
             return p.text(start + '...' + end)
         step = len(start)
@@ -564,21 +568,16 @@ def _seq_pprinter_factory(start, end, basetype):
     return inner
 
 
-def _set_pprinter_factory(start, end, basetype):
+def _set_pprinter_factory(start, end):
     """
     Factory that returns a pprint function useful for sets and frozensets.
     """
     def inner(obj, p, cycle):
-        typ = type(obj)
-        if basetype is not None and typ is not basetype and typ.__repr__ != basetype.__repr__:
-            # If the subclass provides its own repr, use it instead.
-            return p.text(typ.__repr__(obj))
-
         if cycle:
             return p.text(start + '...' + end)
         if len(obj) == 0:
             # Special case.
-            p.text(basetype.__name__ + '()')
+            p.text(type(obj).__name__ + '()')
         else:
             step = len(start)
             p.begin_group(step, start)
@@ -596,24 +595,21 @@ def _set_pprinter_factory(start, end, basetype):
     return inner
 
 
-def _dict_pprinter_factory(start, end, basetype=None):
+def _dict_pprinter_factory(start, end):
     """
     Factory that returns a pprint function used by the default pprint of
     dicts and dict proxies.
     """
     def inner(obj, p, cycle):
-        typ = type(obj)
-        if basetype is not None and typ is not basetype and typ.__repr__ != basetype.__repr__:
-            # If the subclass provides its own repr, use it instead.
-            return p.text(typ.__repr__(obj))
-
         if cycle:
             return p.text('{...}')
         step = len(start)
         p.begin_group(step, start)
         keys = obj.keys()
         # if dict isn't large enough to be truncated, sort keys before displaying
-        if not (p.max_seq_length and len(obj) >= p.max_seq_length):
+        # From Python 3.7, dicts preserve order by definition, so we don't sort.
+        if not DICT_IS_ORDERED \
+                and not (p.max_seq_length and len(obj) >= p.max_seq_length):
             keys = _sorted_for_pprint(keys)
         for idx, key in p._enumerate(keys):
             if idx:
@@ -745,24 +741,28 @@ _type_pprinters = {
     int:                        _repr_pprint,
     float:                      _repr_pprint,
     str:                        _repr_pprint,
-    tuple:                      _seq_pprinter_factory('(', ')', tuple),
+    tuple:                      _seq_pprinter_factory('(', ')'),
-    list:                       _seq_pprinter_factory('[', ']', list),
+    list:                       _seq_pprinter_factory('[', ']'),
-    dict:                       _dict_pprinter_factory('{', '}', dict),
+    dict:                       _dict_pprinter_factory('{', '}'),
-    
+    set:                        _set_pprinter_factory('{', '}'),
-    set:                        _set_pprinter_factory('{', '}', set),
+    frozenset:                  _set_pprinter_factory('frozenset({', '})'),
-    frozenset:                  _set_pprinter_factory('frozenset({', '})', frozenset),
     super:                      _super_pprint,
     _re_pattern_type:           _re_pattern_pprint,
     type:                       _type_pprint,
     types.FunctionType:         _function_pprint,
     types.BuiltinFunctionType:  _function_pprint,
     types.MethodType:           _repr_pprint,
-    
     datetime.datetime:          _repr_pprint,
     datetime.timedelta:         _repr_pprint,
     _exception_base:            _exception_pprint
 }
 
+# render os.environ like a dict
+_env_type = type(os.environ)
+# future-proof in case os.environ becomes a plain dict?
+if _env_type is not dict:
+    _type_pprinters[_env_type] = _dict_pprinter_factory('environ{', '}')
+
 try:
     # In PyPy, types.DictProxyType is dict, setting the dictproxy printer
     # using dict.setdefault avoids overwritting the dict printer
@@ -774,7 +774,7 @@ except AttributeError: # Python 3
     _type_pprinters[types.MappingProxyType] = \
         _dict_pprinter_factory('mappingproxy({', '})')
     _type_pprinters[slice] = _repr_pprint
-    
+
 try:
     _type_pprinters[long] = _repr_pprint
     _type_pprinters[unicode] = _repr_pprint

packages/python/yap_kernel/yap_ipython/lib/security.py

@@ -1,5 +1,5 @@
 """
-Password generation for the yap_ipython notebook.
+Password generation for the IPython notebook.
 """
 #-----------------------------------------------------------------------------
 # Imports

packages/python/yap_kernel/yap_ipython/lib/tests/test_backgroundjobs.py

@@ -1,7 +1,7 @@
 """Tests for pylab tools module.
 """
 #-----------------------------------------------------------------------------
-# Copyright (c) 2011, the yap_ipython Development Team.
+# Copyright (c) 2011, the IPython Development Team.
 #
 # Distributed under the terms of the Modified BSD License.
 #
@@ -19,7 +19,7 @@ import time
 import nose.tools as nt
 
 # Our own imports
-from yap_ipython.lib import backgroundjobs as bg
+from IPython.lib import backgroundjobs as bg
 
 #-----------------------------------------------------------------------------
 # Globals and constants

packages/python/yap_kernel/yap_ipython/lib/tests/test_clipboard.py

@@ -1,8 +1,8 @@
 import nose.tools as nt
 
-from yap_ipython.core.error import TryNext
+from IPython.core.error import TryNext
-from yap_ipython.lib.clipboard import ClipboardEmpty
+from IPython.lib.clipboard import ClipboardEmpty
-from yap_ipython.testing.decorators import skip_if_no_x11
+from IPython.testing.decorators import skip_if_no_x11
 
 @skip_if_no_x11
 def test_clipboard_get():

packages/python/yap_kernel/yap_ipython/lib/tests/test_deepreload.py

@@ -1,16 +1,16 @@
 # -*- coding: utf-8 -*-
 """Test suite for the deepreload module."""
 
-# Copyright (c) yap_ipython Development Team.
+# Copyright (c) IPython Development Team.
 # Distributed under the terms of the Modified BSD License.
 
 import os
 
 import nose.tools as nt
 
-from yap_ipython.utils.syspathcontext import prepended_to_syspath
+from IPython.utils.syspathcontext import prepended_to_syspath
-from yap_ipython.utils.tempdir import TemporaryDirectory
+from IPython.utils.tempdir import TemporaryDirectory
-from yap_ipython.lib.deepreload import reload as dreload
+from IPython.lib.deepreload import reload as dreload
 
 def test_deepreload():
     "Test that dreload does deep reloads and skips excluded modules."

packages/python/yap_kernel/yap_ipython/lib/tests/test_display.py

@@ -1,8 +1,8 @@
-"""Tests for yap_ipython.lib.display.
+"""Tests for IPython.lib.display.
 
 """
 #-----------------------------------------------------------------------------
-# Copyright (c) 2012, the yap_ipython Development Team.
+# Copyright (c) 2012, the IPython Development Team.
 #
 # Distributed under the terms of the Modified BSD License.
 #
@@ -14,13 +14,18 @@
 #-----------------------------------------------------------------------------
 from tempfile import NamedTemporaryFile, mkdtemp
 from os.path import split, join as pjoin, dirname
+import sys
+try:
+    import pathlib
+except ImportError:
+    pass
 
 # Third-party imports
 import nose.tools as nt
 
 # Our own imports
-from yap_ipython.lib import display
+from IPython.lib import display
-from yap_ipython.testing.decorators import skipif_not_numpy
+from IPython.testing.decorators import skipif_not_numpy
 
 #-----------------------------------------------------------------------------
 # Classes and functions
@@ -33,6 +38,9 @@ from yap_ipython.testing.decorators import skipif_not_numpy
 def test_instantiation_FileLink():
     """FileLink: Test class can be instantiated"""
     fl = display.FileLink('example.txt')
+    # TODO: remove if when only Python >= 3.6 is supported
+    if sys.version_info >= (3, 6):
+        fl = display.FileLink(pathlib.PurePath('example.txt'))
 
 def test_warning_on_non_existant_path_FileLink():
     """FileLink: Calling _repr_html_ on non-existant files returns a warning
@@ -175,3 +183,7 @@ def test_recursive_FileLinks():
 def test_audio_from_file():
     path = pjoin(dirname(__file__), 'test.wav')
     display.Audio(filename=path)
+
+def test_code_from_file():
+    c = display.Code(filename=__file__)
+    assert c._repr_html_().startswith('<style>')

packages/python/yap_kernel/yap_ipython/lib/tests/test_editorhooks.py

@@ -4,8 +4,8 @@ from unittest import mock
 
 import nose.tools as nt
 
-from yap_ipython import get_ipython
+from IPython import get_ipython
-from yap_ipython.lib import editorhooks
+from IPython.lib import editorhooks
 
 def test_install_editor():
     called = []

packages/python/yap_kernel/yap_ipython/lib/tests/test_imports.py

@@ -1,11 +1,11 @@
 # encoding: utf-8
-from yap_ipython.testing import decorators as dec
+from IPython.testing import decorators as dec
 
 def test_import_backgroundjobs():
-    from yap_ipython.lib import backgroundjobs
+    from IPython.lib import backgroundjobs
 
 def test_import_deepreload():
-    from yap_ipython.lib import deepreload
+    from IPython.lib import deepreload
 
 def test_import_demo():
-    from yap_ipython.lib import demo
+    from IPython.lib import demo

packages/python/yap_kernel/yap_ipython/lib/tests/test_latextools.py

@@ -1,14 +1,14 @@
 # encoding: utf-8
-"""Tests for yap_ipython.utils.path.py"""
+"""Tests for IPython.utils.path.py"""
 
-# Copyright (c) yap_ipython Development Team.
+# Copyright (c) IPython Development Team.
 # Distributed under the terms of the Modified BSD License.
 from unittest.mock import patch
 import nose.tools as nt
 
-from yap_ipython.lib import latextools
+from IPython.lib import latextools
-from yap_ipython.testing.decorators import onlyif_cmds_exist, skipif_not_matplotlib
+from IPython.testing.decorators import onlyif_cmds_exist, skipif_not_matplotlib
-from yap_ipython.utils.process import FindCmdError
+from IPython.utils.process import FindCmdError
 
 
 def test_latex_to_png_dvipng_fails_when_no_cmd():

packages/python/yap_kernel/yap_ipython/lib/tests/test_lexers.py

@@ -1,6 +1,6 @@
 """Test lexers module"""
 
-# Copyright (c) yap_ipython Development Team.
+# Copyright (c) IPython Development Team.
 # Distributed under the terms of the Modified BSD License.
 
 from unittest import TestCase
@@ -127,3 +127,50 @@ class TestLexers(TestCase):
             (Token.Text, '\n'),
         ]
         self.assertEqual(tokens, list(self.lexer.get_tokens(fragment)))
+
+        fragment = '%%writefile -a foo.py\nif a == b:\n    pass'
+        tokens = [
+            (Token.Operator, '%%writefile'),
+            (Token.Text, ' -a foo.py\n'),
+            (Token.Keyword, 'if'),
+            (Token.Text, ' '),
+            (Token.Name, 'a'),
+            (Token.Text, ' '),
+            (Token.Operator, '=='),
+            (Token.Text, ' '),
+            (Token.Name, 'b'),
+            (Token.Punctuation, ':'),
+            (Token.Text, '\n'),
+            (Token.Text, '    '),
+            (Token.Keyword, 'pass'),
+            (Token.Text, '\n'),
+        ]
+        self.assertEqual(tokens, list(self.lexer.get_tokens(fragment)))
+
+        fragment = '%%timeit\nmath.sin(0)'
+        tokens = [
+            (Token.Operator, '%%timeit\n'),
+            (Token.Name, 'math'),
+            (Token.Operator, '.'),
+            (Token.Name, 'sin'),
+            (Token.Punctuation, '('),
+            (Token.Literal.Number.Integer, '0'),
+            (Token.Punctuation, ')'),
+            (Token.Text, '\n'),
+        ]
+
+        fragment = '%%HTML\n<div>foo</div>'
+        tokens = [
+            (Token.Operator, '%%HTML'),
+            (Token.Text, '\n'),
+            (Token.Punctuation, '<'),
+            (Token.Name.Tag, 'div'),
+            (Token.Punctuation, '>'),
+            (Token.Text, 'foo'),
+            (Token.Punctuation, '<'),
+            (Token.Punctuation, '/'),
+            (Token.Name.Tag, 'div'),
+            (Token.Punctuation, '>'),
+            (Token.Text, '\n'),
+        ]
+        self.assertEqual(tokens, list(self.lexer.get_tokens(fragment)))

packages/python/yap_kernel/yap_ipython/lib/tests/test_pretty.py

@@ -1,19 +1,20 @@
 # coding: utf-8
-"""Tests for yap_ipython.lib.pretty."""
+"""Tests for IPython.lib.pretty."""
 
-# Copyright (c) yap_ipython Development Team.
+# Copyright (c) IPython Development Team.
 # Distributed under the terms of the Modified BSD License.
 
 
 from collections import Counter, defaultdict, deque, OrderedDict
+import os
 import types
 import string
 import unittest
 
 import nose.tools as nt
 
-from yap_ipython.lib import pretty
+from IPython.lib import pretty
-from yap_ipython.testing.decorators import skip_without
+from IPython.testing.decorators import skip_without
 
 from io import StringIO
 
@@ -406,6 +407,15 @@ def test_mappingproxy():
     for obj, expected in cases:
         nt.assert_equal(pretty.pretty(obj), expected)
 
+
+def test_pretty_environ():
+    dict_repr = pretty.pretty(dict(os.environ))
+    # reindent to align with 'environ' prefix
+    dict_indented = dict_repr.replace('\n', '\n' + (' ' * len('environ')))
+    env_repr = pretty.pretty(os.environ)
+    nt.assert_equals(env_repr, 'environ' + dict_indented)
+
+
 def test_function_pretty():
     "Test pretty print of function"
     # posixpath is a pure python module, its interface is consistent
@@ -420,4 +430,24 @@ def test_function_pretty():
         return "Don't panic"
 
     nt.assert_in('meaning_of_life(question=None)', pretty.pretty(meaning_of_life))
-    
+
+
+class OrderedCounter(Counter, OrderedDict):
+    'Counter that remembers the order elements are first encountered'
+
+    def __repr__(self):
+        return '%s(%r)' % (self.__class__.__name__, OrderedDict(self))
+
+    def __reduce__(self):
+        return self.__class__, (OrderedDict(self),)
+
+class MySet(set):  # Override repr of a basic type
+    def __repr__(self):
+        return 'mine'
+
+def test_custom_repr():
+    """A custom repr should override a pretty printer for a parent type"""
+    oc = OrderedCounter("abracadabra")
+    nt.assert_in("OrderedCounter(OrderedDict", pretty.pretty(oc))
+
+    nt.assert_equal(pretty.pretty(MySet()), 'mine')

packages/python/yap_kernel/yap_ipython/lib/tests/test_security.py

@@ -1,6 +1,6 @@
 # coding: utf-8
-from yap_ipython.lib import passwd
+from IPython.lib import passwd
-from yap_ipython.lib.security import passwd_check, salt_len
+from IPython.lib.security import passwd_check, salt_len
 import nose.tools as nt
 
 def test_passwd_structure():

packages/python/yap_kernel/yap_ipython/prolog/jupyter.yap

@@ -10,7 +10,7 @@
   :- module( jupyter,
               [jupyter_query/3,
                blank/1,
-	       streams/1
+	       streams/2
            ]
             ).
 */
@@ -91,7 +91,7 @@ blank(Text) :-
     close(user_input),
     close(user_output),
     close(user_error).
-streams(true) :-
+streams( true) :-
     open('/python/input', read, _Input, [alias(user_input),bom(false),script(false)]),
     open('/python/sys.stdout', append, _Output, [alias(user_output)]),
     open('/python/sys.stderr', append, _Error, [alias(user_error)]).

packages/python/yap_kernel/yap_ipython/yapi.py

@@ -12,7 +12,7 @@ from traitlets import Instance
 from yap_ipython.core.inputsplitter import *
 from yap_ipython.core.inputtransformer import *
 from yap_ipython.core.interactiveshell import *
-
+from ipython_genutils.py3compat import builtin_mod
 from yap_ipython.core import interactiveshell
 
 from collections import namedtuple
@@ -29,7 +29,7 @@ enter_cell = namedtuple('enter_cell', 'self' )
 exit_cell = namedtuple('exit_cell', 'self' )
 completions = namedtuple('completions', 'txt self' )
 errors = namedtuple('errors', 'self text' )
-streams = namedtuple('streams', ' text' )
+streams = namedtuple('streams', 'text' )
 nostreams = namedtuple('nostreams', ' text' )
 
 global  engine
@@ -727,6 +727,7 @@ class YAPRun:
             self.result.result = False
         has_raised = False
         try:
+            builtin_mod.input = self.shell.sys_raw_input
             self.yapeng.mgoal(streams(True),"user", True)
             if cell.strip('\n \t'):
                 #create a Trace object, telling it what to ignore, and whether to

packages/python/yap_kernel/yap_kernel/ipkernel.py

@@ -166,14 +166,14 @@ class YAPKernel(KernelBase):
         """
         self._allow_stdin = allow_stdin
 
-        if PY3:
+        # if PY3:
-            self._sys_raw_input = builtin_mod.input
+        #     self._sys_raw_input = builtin_mod.input
-            builtin_mod.input = self.raw_input
+        #     builtin_mod.input = self.raw_input
-        else:
+        # else:
-            self._sys_raw_input = builtin_mod.raw_input
+        #     self._sys_raw_input = builtin_mod.raw_input
-            self._sys_eval_input = builtin_mod.input
+        #     self._sys_eval_input = builtin_mod.input
-            builtin_mod.raw_input = self.raw_input
+        #     builtin_mod.raw_input = self.raw_input
-        builtin_mod.input = lambda prompt='': eval(self.raw_input(prompt))
+        # builtin_mod.input = lambda prompt='': eval(self.raw_input(prompt))
         self._save_getpass = getpass.getpass
         getpass.getpass = self.getpass
 

pl/consult.yap

@@ -691,7 +691,7 @@ db_files(Fs) :-
 
 '$csult'(Fs, _M) :-
 	 '$skip_list'(_, Fs ,L),
-	 L \== [],
+vz	 L \== [],
 	 !,
 	 user:dot_qualified_goal(Fs).
 '$csult'(Fs, M) :-

pl/messages.yap

@@ -221,7 +221,7 @@ compose_message( loaded(included,AbsFileName,Mod,Time,Space), _Level) --> !,
 	[ '~a included in module ~a, ~d msec ~d bytes' -
 		     [AbsFileName,Mod,Time,Space] ].
 compose_message( loaded(What,AbsoluteFileName,Mod,Time,Space), _Level) --> !,
-	[ '~a ~a in module ~a, ~d msec ~g bytes' -
+	[ '~a ~a in module ~a, ~d msec ~d bytes' -
 		     [What, AbsoluteFileName,Mod,Time,Space] ].
 compose_message(signal(SIG,_), _) -->
 	!,
@@ -347,8 +347,8 @@ main_error_message(resource_error(Who)) -->
 main_error_message(type_error(Type,Who)) -->
 	[ '~*|** ~q should be of type ~a **' - [10,Who,Type]],
 	[ nl ].
-main_error_message(system_error(Who)) -->
+main_error_message(system_error(Who, In)) -->
-	[ '~*|** ~q **' - [10,Who]],
+	[ '~*|** ~q ~q **' - [10,Who, In]],
 	[ nl ].
 main_error_message(uninstantiation_error(T)) -->
 	[ '~*|** found ~q, expected unbound variable **' - [10,T], nl ].
@@ -689,11 +689,11 @@ list_of_preds([P|L]) -->
 	['~q' - [P]],
 	list_of_preds(L).
 
-syntax_error_term(between(_I,J,_L),S,_LC) -->
+syntax_error_term(between(_I,J,_L),[S|T],_LC) -->
 	{string(S)},
 	!,
 	[ '~s' - [S] ],
-	[' <<<< at line ~d ' - [J], nl ].
+	[' <<<< at line ~d >>>> ~s' - [J,T], nl ].
 syntax_error_term(between(_I,J,_L),LTaL,LC) -->
 	syntax_error_tokens(LTaL, J, LC).