doc

C/absmi.c

@@ -22,25 +22,49 @@
 
 @file absmi.c
 
-@defgroup Efficiency Efficiency Considerations
-@ingroup YAPProgramming
+@{
 
 We next discuss several issues on trying to make Prolog programs run
 fast in YAP. We assume two different programming styles:
 
-+ Execution of <em>deterministic</em> programs ofte
-n
++ Execution of <em>deterministic</em> programs often
 boils down to a recursive loop of the form:
 
 ~~~~~
+loop(Done).
 loop(Env) :-
         do_something(Env,NewEnv),
         loop(NewEnv).
 ~~~~~
+
+or to the repeat-fail loop:
+
+~~~~~
+loop(Inp) :-
+        do_something(Inp,Out),
+        out_and_fail(Out).
+~~~~~
+
+
+@}
+
+@defgroup Implementation Implementation Considerations
+@ingroup YAPProgramming
+
+This section is about the YAP implementation, and is mostly of
+interest to hackers.
+
+@{
+
+@defgroup Emulator The Abstract Machine Emulator
+@ingroup Implementation
+
  */
 
+/// code belongs to the emulator
 #define IN_ABSMI_C 1
 #define _INATIVE 1
+/// use tmp variables that are placed in registers
 #define HAS_CACHE_REGS 1
 
 #include "absmi.h"
@@ -1420,3 +1444,7 @@ default:
 
 /* dummy function that is needed for profiler */
 int Yap_absmiEND(void) { return 1; }
+
+/// @}
+
+/// @}

C/attvar.c

@@ -29,7 +29,7 @@ static char SccsId[] = "%W% %G%";
 #endif
 
 /**
-    @adefgroup AttributedVariables_Builtins Low-level support for Attributed Variables
+    @defgroup AttributedVariables_Builtins Low-level support for Attributed Variables
     
      @brief Implementation of Attribute Declarations
     @ingroup attributes

docs/Doxyfile.in

@@ -1153,10 +1153,9 @@ HTML_STYLESHEET        =
 # list). For an example see the documentation.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_EXTRA_STYLESHEET  = @CMAKE_SOURCE_DIR@/docs/custom/customdoxygen.css
-
-
-#                            @CMAKE_SOURCE_DIR@/docs/solarized-light.css
+HTML_EXTRA_STYLESHEET  = @CMAKE_SOURCE_DIR@/docs/custom/customdoxygen.css \
+			@CMAKE_SOURCE_DIR@/docs/custom/pygments.css \
+                            @CMAKE_SOURCE_DIR@/docs/solarized-light.css
 
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note

docs/custom/customdoxygen.css

@@ -1,3 +1,5 @@
+* { box-sizing:border-box }
+
 h1, .h1, h2, .h2, h3, .h3{
     font-weight: 200 !important;
 }
@@ -8,7 +10,8 @@ h1, .h1, h2, .h2, h3, .h3{
 
 .adjust-right {
 margin-left: 30px !important;
-font-size: 1.15em !important;
+margin-right: 30px !important;
+Font-size: 1.15em !important;
 }
 .navbar{
  border: 0px solid #222 !important;

docs/md/atts.md

@@ -28,7 +28,7 @@ interface.
   + @ref sicsatts
   + @ref New_Style_Attribute_Declarations
   + @ref AttributedVariables_Builtins
-  + @ref corout
+  + @ref attscorouts
 
 ###  SICStus Style attribute declarations.              {#SICS_attributes}
 

docs/md/attscorout.md

@@ -1,4 +1,4 @@
-Attributed Variables and Corouting {#atts}
+Attributed Variables and Coroutingx
 ==================================
 
 

docs/md/packages.md

@@ -7,7 +7,7 @@ YAP packages              {#packages}
 
   + @subpage  gecode
 
-  + @subpage  myddas_dbms
+  + @subpage  myddas
 
   + @ref PFL
 

docs/md/programming.md

@@ -1,7 +1,7 @@
 Programming in YAP            {#YAPProgramming}
 ====================
 
-  + @ref Syntax
+  + @subpage YAPSyntax
 
   + @ref YAPCompilerSettings
 

docs/md/swi.md

@@ -12,6 +12,7 @@ resulted in Prolog extensions such as the `dialect` feature. YAP
 currently supports most of the SWI-Prolog foreign interface. The following  SWI
 libraries have been adapted to YAP:
 
+~~~~~
   + @ref aggregate
   + @ref base64
   + @ref broadcast
@@ -42,6 +43,7 @@ libraries have been adapted to YAP:
   + @ref utf8
   + @ref win_menu
   + @ref www_browser
+~~~~~
 
 
 Note that in general SWI code may be from an earlier version than the

docs/md/yap.md

@@ -74,14 +74,12 @@ acknowledge the contributions from Ashwin Srinivasian.
 YAP includes a number of extensions over the original Prolog
 language.
 
-  + @subpage atts
+  + @subpage atts.md
 
   + @ref Rational_Trees
   
   + @ref CohYroutining
 
-  + @ref Attributed_Variables
-
   + @ref  DepthLimited
 
   + @ref  Tabling
@@ -97,15 +95,8 @@ language.
 
 @page YAPProgramming Programming in YAP
 
-    @subpage yapsyntax.md
-
 
 @page packages Packages for YAP
-YAP includes a number of packages.
- 
- @subpage real.md
-
- @subpage chr.md
 
 
   

docs/md/yapsyntax.md

@@ -1,5 +1,6 @@
 
-@ingroup YAPProgramming
+YAP Syntax						{#YAPSyntax}
+====================
 
 We will describe the syntax of YAP at two levels. We first will
 describe the syntax for Prolog terms. In a second level we describe

docs/source/conf.py

@@ -44,7 +44,7 @@ extensions = ['sphinx.ext.autodoc',
               'breathe'
 ]
 
-breathe_projects = { "yap": "${CMAKE_CURRENT_BINARY_DIR" }
+breathe_projects = { "yap": "../../build/docs/xml" }
 breathe_default_project = "yap"
 
 # Add any paths that contain templates here, relative to this directory.

packages/bdd/bdd.yap

@@ -1,4 +1,8 @@
-@defgroup BDDsPL Binary Decision Diagrams and Friends
+/**
+
+  @file bdd.yap
+  
+  @defgroup BDDsPL Binary Decision Diagrams and Friends
 @ingroup BDDs
 @{
 

packages/real/real.md

@@ -213,10 +213,9 @@ logical :-
 
 Also @subpaage yap-real describes the YAP specfic details in real.
 
-*/Development of real in YAP   (#yap-real)
+*/Development of real in YAP   (#yap_real)
 ---------------------------
 
-
 YAP includes a development version of real, designed to experiment
 with the internals of the implementation of R. It includes major
 changes and is likely to be much less stable than the version

pl/arrays.yap

@@ -25,7 +25,7 @@
 % YAP_ARRAYS is defined in Yap.h
 %
 
-/** @pred  array(+ _Name_, + _Size_)
+/** @pred  array( +Name, +Size )
 
 
 Creates a new dynamic array. The  _Size_ must evaluate to an

pl/meta.yap

@@ -1,5 +1,6 @@
 /**
 
+  @file meta.yap
 
   @defgroup YAPMetaPredicates Using Meta-Calls with Modules
  @ingroup YAPModules

pl/modules.yap

@@ -18,7 +18,12 @@
 
 /**
 @file modules.yap
-**/
+
+  @defgroup ModuleBuiltins Module Support
+
+  @{
+
+  **/
 :- system_module( '$_modules', [abolish_module/1,
         add_import_module/3,
         current_module/1,
@@ -783,3 +788,5 @@ module_state :-
     format('   ~w:~w :- ~w:~w.~n',[M,G,HostM,G0]),
 	fail.
 module_state.
+
+// @}