diogo/yap-6.3
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2e289a8317
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52 Commits

Author SHA1 Message Date
rzf
2e289a8317 reverted to old version due to a wrong commit 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2124 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-03-06 07:37:56 +00:00
rzf
b55a9bd8f9 added option for setting the value of zeros in cpt table. By using a small value rather than 0.0 some errors with jt and vel are avoided 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2123 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-03-06 07:11:18 +00:00
rzf
60b5042f09 corrected a bug in the BNT path specification 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2121 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-27 21:28:07 +00:00
rzf
575d5bcb26 fixed a bug in bnt.yap: the index of the value of the evidence variable start from 1 rather than from 0 
added the possibility of computing the marginal of more than one variable in bnt.yap when jtree is used


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2118 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-26 13:52:38 +00:00
rzf
ceaf8af95d added binary flag suppress_attribute_display to clpbn to suppress the dislpaying of attributes 
fixed a bug in bnt.yap: the index of the value of the evidence variable start from 1 rather than from 0
added the possibility of computing the marginal of more than one variable in bnt.yap


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2103 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-18 16:42:04 +00:00
vsc
d86f30a2eb CLP(BN) fixes 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2096 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-13 11:57:46 +00:00
vsc
4fa75e361a fix startline. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2094 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-12 22:53:02 +00:00
vsc
efe6c4eaef condor support. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2092 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-12 21:50:58 +00:00
vsc
af0fb4f4d9 SWI-portability changes 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2088 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-12 17:03:59 +00:00
vsc
64d62f1e3e improve JT 
fix graph compatibility with SICStus
re-export declaration.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2037 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-12-05 12:17:25 +00:00
vsc
1bd96722de junction tree algorithm 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2031 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-11-28 23:52:14 +00:00
vsc
507d3058f4 fix some overflows 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2028 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-11-20 15:51:39 +00:00
vsc
9ffa95724d just get rid of some debugging code. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2024 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-11-16 15:02:25 +00:00
vsc
968c509131 matrix operations for CLP(BN) discrete distributions. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2023 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-11-16 15:00:56 +00:00
vsc
d908c8633f implement sophisticated operations with matrices. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2022 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-11-16 14:58:41 +00:00
vsc
e01e7cc8bf small fix 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1977 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-11-07 09:35:53 +00:00
vsc
22c5632a53 fix overflow 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1969 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-10-28 11:23:41 +00:00
vsc
9e9c260f7e new version of viterbi implementation 
fix all:atvars reporting bad info
fix bad S info in x86_64


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1968 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-10-28 00:54:09 +00:00
vsc
66d14116dd improve CLP(BN)/BNT interface 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1918 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-08-06 14:55:43 +00:00
vsc
dc0c04d9d2 encapsulate access to distribution, so that they are not stored in the 
constraint itself.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1916 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-07-13 00:52:54 +00:00
vsc
9a730f3b05 CLP(BN) related fixes 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1914 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-07-07 01:52:57 +00:00
vsc
71eea67bc8 new CLP(BN) files 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1913 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-07-07 01:49:52 +00:00
vsc
244d4128cf matlab interface. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1887 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-05-24 15:11:46 +00:00
vsc
90c1641841 several debugger and CLP(BN) improvements. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1732 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2006-12-13 16:10:26 +00:00
vsc
783ae4b9a0 fix syntax error message handling 
improve redblack trees and use it to reimplement association lists and
to have better implementation of several graph algorithms.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1591 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2006-04-10 19:24:52 +00:00
vsc
1edb3a8115 fix indexing and tabling bugs 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1567 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2006-03-20 19:51:44 +00:00
vsc
31f7623984 CLP(BN) examples 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1519 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2006-01-17 16:35:51 +00:00
vsc
e10213929a support new interface between YAP and GMP, so that we don't rely on our own 
allocation routines.
Several big fixes.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1490 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2006-01-02 02:16:19 +00:00
vsc
60d79804fe major changes to support online event-based profiling 
improve error discovery and restart on scanner.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1477 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-12-17 03:25:39 +00:00
vsc
5c2e06ad50 write_depth/3 
overflow handlings and garbage collection
Several ipdates to CLPBN
dif/2 could be broken in the presence of attributed variables.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1474 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-12-05 17:16:12 +00:00
vsc
5cfad07c92 update documentation. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1434 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-11-01 18:19:44 +00:00
vsc
91f6801f4c iupdate CLP(BN) 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1421 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-10-28 18:04:25 +00:00
vsc
de3bd15889 significant improvements on viterbi performance for HMMs. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1389 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-09-09 17:22:33 +00:00
vsc
cffa76355e More viterbi fixes 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1368 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-08-19 03:38:08 +00:00
vsc
a4b79352d5 preliminary support for viterbi algorithm and HMMs 
some code cleanups


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1363 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-08-17 13:34:56 +00:00
vsc
b8f1beec74 fix debugger to do well nonsource predicates. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1354 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-08-02 03:09:52 +00:00
vsc
92c6e7d93a first cut at implementing Gibbs sampling on CLP(BN), mostly for fun. It 
only works for non-deterministic CPTs, of course.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1284 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-04-27 20:13:03 +00:00
vsc
4c15c9371e indexing code could get confused with suspension points 
some further improvements on oveflow handling
fix paths in Java makefile
changs to support gibbs sampling in CLP(BN)


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1283 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-04-27 20:09:26 +00:00
vsc
18f0de5486 fix log(0.0) and log10(0.0) to be SICStus compatible. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1245 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-02-18 21:34:02 +00:00
vsc
52a46e5c5d fix mess with add clause 
improves on sigsegv handling


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1239 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-02-08 04:05:39 +00:00
vsc
3fce73a11f fix atom_codes 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1238 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-01-31 17:47:57 +00:00
vsc
be638d705c CLPBN: query variables may have static evidence. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1235 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-01-15 05:40:38 +00:00
vsc
baf823eb5c fix bug in clause emulator 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1234 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-01-15 05:21:36 +00:00
vsc
a4f158fd33 more fixes to CLPBN 
fix some Yap overflows.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1216 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2004-12-20 21:44:58 +00:00
vsc
a013a38c7b get rid of debugging messages 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1215 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2004-12-16 06:19:00 +00:00
vsc
94b1984a7f update graphviz interface 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1214 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2004-12-16 06:17:18 +00:00
vsc
7acacd1618 new version 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1212 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2004-12-16 06:07:07 +00:00
vsc
3824534ee8 further updates to CLP(BN): fixes on variable elimination and 
graph display with graphviz.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1210 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2004-12-11 19:53:43 +00:00
vsc
49455985b3 include two extensions for CLP(BN): dumping in XBif format (XML) and 
aggregate averages.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1209 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2004-12-08 22:32:34 +00:00
vsc
5143aebb01 try to reduce overheads when running with goal expansion enabled. 
CLPBN fixes
Handle overflows when allocating big clauses properly.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1193 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2004-12-05 05:01:45 +00:00