f1cbc7f3be
improved mln stuff
2013-06-07 18:22:42 -05:00
23a787bcb3
mlns in PFL
2013-06-06 19:22:22 -05:00
6b31d08633
mlns in PFL
2013-06-06 19:18:46 -05:00
ea3f25c378
Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3
2013-04-16 21:26:41 -05:00
cb08a542e2
get rid of comments
2013-04-16 21:14:05 +01:00
1c9cc469d5
Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3
2013-04-16 21:11:51 +01:00
9e57b32431
Fix compilation with older versions of GCC
2013-04-16 21:07:03 +01:00
e5d5352268
Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3
2013-04-16 07:53:01 -05:00
78410ade1a
ensure evidence does not go away, make sure YAP compiles
2013-04-15 19:12:53 -05:00
9e9ad24c90
Small updates to latex docs
2013-04-13 12:43:52 +01:00
761406fa46
Small updates to html docs
2013-04-13 12:33:48 +01:00
745a034d43
Reduce the size of the section labels
2013-04-13 00:49:59 +01:00
cb6715664b
Create a HTML version of the manual
2013-04-12 23:49:12 +01:00
3405a8895b
Small updates to manual
2013-04-12 23:48:25 +01:00
fc2530fbe2
It appears that 'make install' on top level calls 'make all' on the horus makefile
2013-04-11 23:16:51 +01:00
7ecfb999d5
Style change
2013-04-11 23:06:13 +01:00
de6d7981fb
Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3
2013-04-11 22:28:41 +01:00
23d2f7b8e5
more cleanups.
2013-04-07 10:40:42 -05:00
4a95575fe1
should always lookup who generates the parameters (not supported in learning).
2013-04-07 09:51:20 -05:00
30cc02e4ee
Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3
2013-04-07 08:18:54 -05:00
4ab4f1cab1
allow integer parameters.
2013-04-07 08:18:13 -05:00
12799589a8
thread fixes
2013-04-07 00:00:41 +01:00
b13a8b73a1
Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3
2013-04-04 16:20:18 +01:00
a2e54a235a
Factor: improve factor multiplication
...
Pass the argument as reference-to-const and also allow chaining of multiplications.
2013-03-21 21:49:12 +00:00
6da2580c8f
Fix c550139c8b
2013-03-21 21:43:27 +00:00
e2ca97c8de
Factor: use the default copy constructor
2013-03-21 21:20:28 +00:00
389daab83f
Oops
2013-03-21 19:29:24 +00:00
da88ffcc78
Watch out for undefined behaviour.
2013-03-18 16:18:47 +00:00
c550139c8b
Add more assertations to Factor class.
...
SumOutFirstVariable and SumOutLastVariable will only are correctly defined if the variable is binary.
2013-03-18 15:57:10 +00:00
4ca17b9e9b
Turn off debug by default
2013-03-18 15:08:06 +00:00
acf83dd0a1
Add some unit tests
2013-03-18 14:42:54 +00:00
403695a7ba
Ouch! We were deleting the same links twice
2013-03-18 12:56:36 +00:00
07dba92406
Add a more complex example to be used by unit tests
2013-03-18 11:33:27 +00:00
bc04d28092
Use a static method to create a FactorGraph
2013-03-14 16:57:34 +00:00
2ef1651c6a
Add more 2 digits of precision
2013-03-14 16:55:20 +00:00
b5d72f751e
We need to reverse the ranges too
2013-03-13 23:22:38 +00:00
d3663d9370
Forgot to call exit
2013-03-13 22:37:04 +00:00
23469e6f94
Initial infrastructure to support CppUnit
2013-03-13 14:47:14 +00:00
5e5feb5674
Improve Makefile
2013-03-12 21:11:43 +00:00
7f910c694d
fix paths
2013-03-10 15:21:42 -05:00
d0858c0d0c
remove debugging
2013-03-10 17:24:47 +00:00
6397cc9ff7
merge
2013-03-10 17:17:58 +00:00
e7146c9a46
new version, thread only.
2013-03-10 17:13:09 +00:00
b0b74fd0f8
update
2013-03-10 15:49:37 +00:00
f62ea7686a
fixes and update
2013-03-10 15:44:23 +00:00
21c401c0dd
Move CTNode class to sourcef file
2013-03-09 19:41:17 +00:00
2da7249247
Trivial
2013-03-09 17:14:00 +00:00
a300b27764
BeliefProp: move some members to private section
2013-03-09 16:46:42 +00:00
95539226ea
Kill SPNodeInfo class
2013-03-09 16:41:53 +00:00
d563fce952
Var: replace struct by a pair
2013-03-09 16:18:13 +00:00
532654baba
Use enum class instead of old enum.
...
As we are relying on c++11x for other stuff too.
2013-03-09 15:39:39 +00:00
a5000dab32
change SWI stuff to swi directory.
2013-03-05 15:50:38 -06:00
7193d2238d
Move template definitions to source file and use explicite template instantiation.
2013-03-04 17:58:32 +00:00
063f3ff6e3
Forgot to add these two in the previous commit
2013-03-04 17:57:56 +00:00
93fa793683
Separate TFactor and Factor classes.
...
Rename TFactor to GenericFactor. GenericFactor.cpp is empty for now.
2013-03-04 15:47:47 +00:00
98efd54da7
Remove unused member function
2013-03-04 15:10:51 +00:00
acf565d91b
new version.
2013-03-03 08:54:09 -06:00
902624f557
f(void) vs f()
...
"In fact, the f(void) style has been called an "abomination" by Bjarne Stroustrup, the creator of C++, Dennis Ritchie, the co-creator of C, and Doug McIlroy, head of the research department where Unix was born."
2013-02-28 19:45:37 +00:00
b49e9b908b
gradient is more complex to compute
2013-02-26 09:39:56 -06:00
59d97f83b4
handle negation in tries and add debugging hooks
2013-02-26 09:39:18 -06:00
c8b639f495
Define sortByParams as a local class
2013-02-22 12:35:14 +00:00
0991a84793
Move sortByParams to source file
2013-02-21 00:13:11 +00:00
59c6f5c243
DISALLOW_COPY_AND_ASSIGN should be in the end
2013-02-21 00:06:34 +00:00
f0572e3cfb
Move BpLink to inside of BeliefProp
2013-02-20 23:59:03 +00:00
6b0e125e3b
Move MsgSchedule enum to inside class BeliefProp.
...
Move also SPNodeInfo to inside BeliefProp. Improve also some using of enums.
2013-02-20 23:34:03 +00:00
ce8152d7a0
Add a comment explaining why we are inlining functions with loops in ElimGraph
2013-02-20 23:08:12 +00:00
6f6f578578
fix not handling
2013-02-20 13:10:20 -06:00
1d54a78601
BayesBall: improve encapsulation
2013-02-20 14:13:37 +00:00
9a68d95c18
Turn EGNode to be a nested class inside ElimGraph
2013-02-20 13:49:01 +00:00
8ca379c74a
Move ElimHeuristic enum to inside of ElimGraph class
2013-02-20 12:52:55 +00:00
8de22f4f0b
Counting Bp: move internal classes to source file
2013-02-20 12:42:05 +00:00
8c2468c28b
Improve encapsulation in HorusYap and perform other small refactorings
2013-02-20 11:52:42 +00:00
77dfe50acb
LiftedVe: move internal classes to source file
2013-02-20 00:21:01 +00:00
7edfe44576
WeightedBp: remove unnecessary include
2013-02-20 00:13:15 +00:00
74a9eda09d
HorusCli: put internal functions in an anonymous namespace
2013-02-20 00:05:45 +00:00
e3439af0a0
LiftedKc: improve header include
2013-02-19 23:59:05 +00:00
e434e87cc8
LiftedKc: remove unnecessary data members
2013-02-19 23:57:22 +00:00
c9543514c5
LiftedKc: move some internal classes to source file
2013-02-19 23:47:46 +00:00
638bee41cd
fix compilation issues & up-to-date to recente SWI.
2013-02-17 07:32:55 -06:00
b6ee7b4460
Don't extend explicity the life time of returned temporaries.
...
That sort of optimization is compiler's work.
2013-02-16 18:58:22 +00:00
ea49b517e8
Some renamings in ElimGraph
2013-02-16 17:03:12 +00:00
ba79d2e422
Add a source file for Indexer class
...
- Move some non-performance critical methods to the source file
- Fix some implicit declarions of members in iomanip
- Fix declaration order in Makefile.in
2013-02-16 16:42:08 +00:00
0852c4fe22
Clean ups
2013-02-16 16:17:14 +00:00
d0f5d0f9ab
Change LiftedOperations to be a namespace instead of class with static member functions
2013-02-16 16:00:53 +00:00
be24ff5160
Fix typos
2013-02-16 15:30:44 +00:00
acb4bf610f
Clean HorusYap a bit
2013-02-16 01:54:11 +00:00
bf1ba17855
Fix typos detected by cppcheck
2013-02-13 23:47:00 +00:00
57f46e7c0d
Fix printed string showed when file opening fails
2013-02-13 19:18:55 +00:00
ab7f4c8113
Fix namespace name
2013-02-13 19:09:11 +00:00
ef4ebb4d7f
Use camel case for constants and enumerators.
...
All capitals case should be reserved for macros and besides there is no big need to emphasize constness in general.
2013-02-13 18:54:15 +00:00
afd26ed9b4
Trivial
2013-02-13 15:25:55 +00:00
bd70033c06
Disallow copy and assign for Var too
2013-02-13 14:42:24 +00:00
2bc123d72c
Update class, struct and enum bracket style
2013-02-13 14:26:47 +00:00
e178c1af04
Change namespace name to be in Pascal case
2013-02-08 21:12:46 +00:00
6a1a209ee3
Revert "Improve namespace names"
...
This reverts commit 973df43fe0
2013-02-08 21:01:53 +00:00
264ef7a067
Clean a bit LiftedWCNF class
2013-02-08 12:12:45 +00:00
bff56c75ca
Trivial
2013-02-08 01:11:18 +00:00
98842dca74
Trivial
2013-02-08 00:56:42 +00:00
c41b6d80b6
Trivial
2013-02-08 00:28:32 +00:00
cd8a25162e
Trivial
2013-02-08 00:22:51 +00:00
206cf0a9c7
Trivial
2013-02-08 00:20:01 +00:00
973df43fe0
Improve namespace names
2013-02-08 00:15:41 +00:00
6f83ceb6f5
Put the code inside a horus namespace
2013-02-07 23:53:13 +00:00
4267465f53
Trivial
2013-02-07 22:41:04 +00:00
3738d0b2c6
Move some things around. No functional changes
2013-02-07 22:37:45 +00:00
2992f9e3cf
Trivial
2013-02-07 20:54:59 +00:00
5c84a2f532
Improve includes
2013-02-07 20:09:10 +00:00
544d0aa39e
Improve header guards (again)
2013-02-07 17:50:33 +00:00
bb7a530da3
Avoid importing the std namespace
2013-02-07 13:37:15 +00:00
7b60e88545
Improve Header guards
2013-02-06 22:58:42 +00:00
80452bf75d
Small improvements
2013-02-06 00:29:29 +00:00
42a5bc493a
Move methods with more than two lines to outside of class definition
2013-02-06 00:29:03 +00:00
f873074961
update.
2013-02-05 14:34:55 +00:00
02a9709431
Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3
2013-01-28 09:32:22 +00:00
56a22473ea
update swi.
2013-01-28 09:31:06 +00:00
0d9d59f5fe
Trivial
2013-01-25 13:58:30 +00:00
31bff4dc84
Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3
2013-01-25 13:50:09 +00:00
bef65dac57
Fix a compilation error with older versions of GCC
2013-01-25 13:47:20 +00:00
9dfedafe98
PFL manual: small improvements
2013-01-25 13:45:35 +00:00
8e427074d8
Merge branch 'master' of ssh://git.dcc.fc.up.pt/yap-6.3
2013-01-25 09:35:30 +00:00
bbaf1f13d4
upstream
2013-01-25 09:32:48 +00:00
c758d23ab4
upstream swi code
2013-01-25 09:32:17 +00:00
829c3ec8c4
update to latest swi.
2013-01-24 13:14:07 +00:00
8774fed9ff
use uninstalled YAP with appropriated libs
2013-01-22 22:22:30 +00:00
b24c91eeb3
install chr in bootstrap
2013-01-20 22:55:19 +00:00
b25e1fb7e8
update
2013-01-18 14:34:15 +00:00
5683258187
PFL manual: fix typo
2013-01-16 08:53:09 +00:00
6cad8969c6
Put solver always as the first argument
2013-01-15 12:27:21 +00:00
cac748d41a
Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3
2013-01-14 16:43:46 +00:00
ec37045ca3
new versions.
2013-01-13 11:53:58 +00:00
83ccb31665
PFL manual: rework the parameter learning section
2013-01-12 12:30:34 +00:00
90614d3594
PFL manual: minor tweaks
2013-01-12 12:30:14 +00:00
3ecc65b816
PFL manual: fix typo, is sprinkler not sprinker
2013-01-11 21:15:01 +00:00
509491cd0f
PFL manual: improve the way we present the solver options
2013-01-11 19:39:27 +00:00
8c8e2b034f
Improve a bit the learning examples
2013-01-11 00:16:56 +00:00
8285b8e1e4
Cuttify\!
2013-01-10 23:38:46 +00:00
8f9b11cc7c
Comment set_em_solver so that hve becomes that default
2013-01-10 23:04:17 +00:00
4aa4cb50b0
Switch solver order in examples
2013-01-10 23:02:34 +00:00
f3bd8ad414
Use the word option instead of key. Key reminds me of hashes
2013-01-10 22:59:12 +00:00
f7fcfec8ce
PFL manual: some rewording
2013-01-10 22:42:23 +00:00
d3e2abd677
Don't use the name horus in documentation.
...
It is just an internal code name.
2013-01-10 22:39:46 +00:00
fdeca2852a
Use only one interface for options.
...
set_pfl_flag/2 now can be called for setting options for solvers written in Prolog and for solvers in Horus.
2013-01-10 22:10:22 +00:00
e5e224d89b
Fix typo
2013-01-10 21:51:45 +00:00
bd84949f09
Trivial
2013-01-10 17:23:09 +00:00
1bb1138b3a
Fix EM typos
2013-01-10 13:45:24 +00:00
b7ef6576a6
add keys within learning
2013-01-09 18:34:19 +00:00
6cee85bd60
fix cases where you get repeated keys or a(X,X) keys in PFL.
2013-01-09 18:22:01 +00:00
46fbc539bf
handle repeated query vars with evidence
2013-01-09 17:49:07 +00:00
ff953eb20a
Merge branch 'master' of https://github.com/tacgomes/yap6.3
2013-01-09 16:48:16 +00:00
2feac46e54
PFL manual: several improvements
2013-01-09 16:45:01 +00:00
7f452d2397
Refactor the benchmarks
2013-01-09 15:25:14 +00:00
7fabfcf4c9
Trivial
2013-01-09 11:43:40 +00:00
24271157ce
Clean unecessary latex documents
2013-01-08 22:55:27 +00:00
59ae52623c
PFL manual: several improvements
2013-01-08 22:51:44 +00:00
6755e50525
PFL manual: small improvements
2013-01-08 22:00:31 +00:00
ea054468bc
Improve hcli usage string
2013-01-08 21:17:56 +00:00
dc536fabc2
Beautify setHorusFlag
2013-01-08 21:13:58 +00:00
2738d83302
Remove some alias for hve
2013-01-08 20:48:46 +00:00
dfd7360291
Allow the use of solver as an alias of ground_solver
2013-01-08 20:47:12 +00:00
dbd35a20a2
PFL manual: improve introduction section
2013-01-08 19:40:20 +00:00
9c8fd804df
PFL manual: add a further information section
2013-01-08 19:39:39 +00:00
f94032d06c
PFL manual: add an installation section
2013-01-08 19:39:03 +00:00
1b9c4e96e7
Prefix with bp_ some bp flags
2013-01-08 17:06:40 +00:00
da0514a779
Add support for more infernce keys.
...
Add support for export_libdai, export_uai, export_gv and print_fg.
Document these keys.
2013-01-08 17:01:03 +00:00
4220069d90
PFL manual: use the Unix end-of-line marker
2013-01-08 15:34:56 +00:00
75b652b0c9
PFL manual: improve title page and reword a sentence
2013-01-08 15:33:55 +00:00
6375d05a93
PFL manual: add section for horus cli
2013-01-08 15:31:52 +00:00
182429252e
Update the usage string for hcli
2013-01-08 14:47:21 +00:00
c92b7c3e7e
Install hcli to the bin directory
2013-01-08 00:33:01 +00:00
f598881cc5
Explain better the potential value order
2013-01-07 22:21:52 +00:00
9bb43360a2
Rearrange the probabilities to do a clean diff against the exported model
2013-01-07 22:18:50 +00:00
ba32ebc5f5
Add support for bayesian networks defined in an UAI file format
2013-01-07 22:17:05 +00:00
82a4cc508b
Change burglary-alarm.uai to be bayes instead of markov
2013-01-07 22:01:49 +00:00
bafd7320a5
Rework a bit the examples
2013-01-07 14:59:51 +00:00
91dbd60ad4
Allow calling set_horus_flag/2 without loading clpbn_horus
2013-01-07 14:05:56 +00:00
96f4e7ea1b
Fix typo
2013-01-07 14:04:44 +00:00
cdc15e8cd8
merge with yap-6.3
2013-01-06 20:09:48 +00:00
ec2d9e0967
Trivial
2013-01-05 12:04:43 +00:00
f0768e76f2
Improve Makefile
2013-01-05 01:02:19 +00:00
f55ccdef33
Add a manual for PFL written in Latex
2013-01-05 00:49:39 +00:00
c5a390460d
Chanse use_logarithms default to true.
...
Reasoning:
- In small networks, the use of logarithms is not noticed in terms of performance.
- In large networks, the chance to have a division by 0 is too high when not using logarithms.
2013-01-04 19:48:31 +00:00
f2682374fb
Forgot to update the Makefile in the previous commit
2013-01-04 15:42:03 +00:00
3347f0e676
Rename two examples
2013-01-03 23:44:30 +00:00
d4d11cd4b4
Fix sprinkler probability order
2013-01-03 18:48:15 +00:00
ea5dbe2bca
Trivial
2013-01-03 18:26:12 +00:00
d293c5e5a9
Trivial
2012-12-28 15:40:32 +00:00
3363019c93
Remove unnecessary methods
2012-12-28 01:35:59 +00:00
7d9af75c35
Improve solver flags
2012-12-27 23:21:32 +00:00
d36b63ece3
Trivial
2012-12-27 22:29:20 +00:00
c96496720b
Trivial
2012-12-27 22:28:19 +00:00
485c3e34b2
Use more DISALLOW_COPY_AND_ASSIGN
2012-12-27 22:25:45 +00:00
7b7f663ac6
Don't use public members for solver flags
2012-12-27 15:44:40 +00:00
b996436b24
Reorganize
2012-12-27 15:05:40 +00:00
de0a118ae5
Move belief propagation stuff out from Horus.h
2012-12-27 15:00:30 +00:00
cbea630fbf
Cosmetic fixes
2012-12-27 12:54:58 +00:00
e6c2fa30ee
Added uthash to store indexed predicates info
2012-12-27 12:11:14 +00:00
8bdcb65907
Improve variable elimination
2012-12-26 22:55:48 +00:00
188f359496
Fix a warning about a unitialized var
2012-12-26 21:48:05 +00:00
d8c5725b2e
This shouldn't be on the repository
2012-12-21 15:20:28 +00:00
4b901d26d7
Improve error messages
2012-12-20 23:34:53 +00:00
Vitor Santos Costa
Tiago Gomes
tagomes@fc.up.pt
David Vaz
David Vaz