diogo/yap-6.3
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7cbdad30f2
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75 Commits

Author SHA1 Message Date
Vitor Santos Costa
7cbdad30f2 be more careful about calling the solver: 
- only pass variables related to the query
  - call the solver in case we have only evidence
 2008-10-29 18:23:26 +00:00
Vítor Santos de Costa
0028072865 fix gibbs EM in case we have 0 elements. 2008-10-24 10:36:37 +01:00
Vitor Santos Costa
0dcf34b7bc mainbranch fixes to: 
- fix quoted characters output
- fix line position in read_term and friends
- make messages look a bit better
- CLP(BN) EM improvements.
 2008-10-23 22:17:45 +01:00
Vítor Santos de Costa
592fe9e366 new version of CLP(BN) with EM learning 2008-10-22 00:44:02 +01:00
Vitor Santos Costa
06a5d8f9db fix some unbound variables in dist_unbound 2008-09-30 11:48:24 +01:00
Vitor Santos Costa
75cd0c619c syntax error fixing in em.yap 2008-09-30 00:04:07 +01:00
Vitor Santos Costa
3b811d0d70 changes to support em: step 1 2008-09-30 00:02:31 +01:00
vsc
5d49f14545 fix rbtrees built from ordered lists 
fix jt
be more flexible about unbound parents


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2260 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-06-05 16:24:08 +00:00
vsc
1c6b91cb72 improve WIN32 support and installation 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2170 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-03-27 00:41:33 +00:00
vsc
b2274186bd make or-parallelism compile again 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2164 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-03-25 16:45:53 +00:00
vsc
d02bc3de81 update chr 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2143 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-03-13 14:38:02 +00:00
rzf
93e6f17c3b removed singletons 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2135 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-03-09 08:21:00 +00:00
rzf
186d4e0687 corrected bug: call_solver was not exported 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2131 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-03-08 15:38:24 +00:00
rzf
097bdcec67 reverted to old version due to a wrong commit 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2126 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-03-06 07:57:23 +00:00
rzf
2e289a8317 reverted to old version due to a wrong commit 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2124 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-03-06 07:37:56 +00:00
rzf
b55a9bd8f9 added option for setting the value of zeros in cpt table. By using a small value rather than 0.0 some errors with jt and vel are avoided 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2123 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-03-06 07:11:18 +00:00
rzf
60b5042f09 corrected a bug in the BNT path specification 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2121 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-27 21:28:07 +00:00
rzf
575d5bcb26 fixed a bug in bnt.yap: the index of the value of the evidence variable start from 1 rather than from 0 
added the possibility of computing the marginal of more than one variable in bnt.yap when jtree is used


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2118 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-26 13:52:38 +00:00
rzf
ceaf8af95d added binary flag suppress_attribute_display to clpbn to suppress the dislpaying of attributes 
fixed a bug in bnt.yap: the index of the value of the evidence variable start from 1 rather than from 0
added the possibility of computing the marginal of more than one variable in bnt.yap


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2103 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-18 16:42:04 +00:00
vsc
d86f30a2eb CLP(BN) fixes 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2096 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-13 11:57:46 +00:00
vsc
4fa75e361a fix startline. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2094 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-12 22:53:02 +00:00
vsc
afb734b51a improve learning in CLP(BN) 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2093 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-12 22:28:18 +00:00
vsc
efe6c4eaef condor support. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2092 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-12 21:50:58 +00:00
vsc
af0fb4f4d9 SWI-portability changes 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2088 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2008-02-12 17:03:59 +00:00
vsc
64d62f1e3e improve JT 
fix graph compatibility with SICStus
re-export declaration.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2037 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-12-05 12:17:25 +00:00
vsc
1bd96722de junction tree algorithm 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2031 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-11-28 23:52:14 +00:00
vsc
507d3058f4 fix some overflows 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2028 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-11-20 15:51:39 +00:00
vsc
9ffa95724d just get rid of some debugging code. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2024 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-11-16 15:02:25 +00:00
vsc
968c509131 matrix operations for CLP(BN) discrete distributions. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2023 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-11-16 15:00:56 +00:00
vsc
d908c8633f implement sophisticated operations with matrices. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@2022 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-11-16 14:58:41 +00:00
vsc
e01e7cc8bf small fix 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1977 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-11-07 09:35:53 +00:00
vsc
22c5632a53 fix overflow 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1969 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-10-28 11:23:41 +00:00
vsc
9e9c260f7e new version of viterbi implementation 
fix all:atvars reporting bad info
fix bad S info in x86_64


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1968 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-10-28 00:54:09 +00:00
vsc
66d14116dd improve CLP(BN)/BNT interface 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1918 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-08-06 14:55:43 +00:00
vsc
dc0c04d9d2 encapsulate access to distribution, so that they are not stored in the 
constraint itself.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1916 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-07-13 00:52:54 +00:00
vsc
9a730f3b05 CLP(BN) related fixes 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1914 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-07-07 01:52:57 +00:00
vsc
71eea67bc8 new CLP(BN) files 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1913 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-07-07 01:49:52 +00:00
vsc
244d4128cf matlab interface. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1887 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-05-24 15:11:46 +00:00
vsc
f1411c368e CLP(BN) fixes and declare dynamic as dynamic. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1861 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2007-03-30 22:42:15 +00:00
vsc
90c1641841 several debugger and CLP(BN) improvements. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1732 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2006-12-13 16:10:26 +00:00
vsc
783ae4b9a0 fix syntax error message handling 
improve redblack trees and use it to reimplement association lists and
to have better implementation of several graph algorithms.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1591 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2006-04-10 19:24:52 +00:00
vsc
1edb3a8115 fix indexing and tabling bugs 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1567 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2006-03-20 19:51:44 +00:00
vsc
31f7623984 CLP(BN) examples 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1519 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2006-01-17 16:35:51 +00:00
pmoura
eb01b47d5f Added missing slash which prevented successful compilation. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1517 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2006-01-17 14:45:28 +00:00
vsc
9618c90255 YENV may be an HW register (breaks some tabling code) 
All YAAM instructions are now brackedted, so Op introduced an { and EndOp introduces an }. This is because Ricardo assumes that.
Fix attvars when COROUTING is undefined.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1516 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2006-01-17 14:10:42 +00:00
vsc
e10213929a support new interface between YAP and GMP, so that we don't rely on our own 
allocation routines.
Several big fixes.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1490 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2006-01-02 02:16:19 +00:00
vsc
60d79804fe major changes to support online event-based profiling 
improve error discovery and restart on scanner.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1477 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-12-17 03:25:39 +00:00
vsc
5c2e06ad50 write_depth/3 
overflow handlings and garbage collection
Several ipdates to CLPBN
dif/2 could be broken in the presence of attributed variables.


git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1474 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-12-05 17:16:12 +00:00
vsc
5cfad07c92 update documentation. 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1434 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-11-01 18:19:44 +00:00
vsc
91f6801f4c iupdate CLP(BN) 
git-svn-id: https://yap.svn.sf.net/svnroot/yap/trunk@1421 b08c6af1-5177-4d33-ba66-4b1c6b8b522a
 2005-10-28 18:04:25 +00:00