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801 Commits

Author SHA1 Message Date
Tiago Gomes
d90fcd532b minor update 2012-04-21 17:21:54 +01:00
Tiago Gomes
8c689665a0 support setting flags in horus cli and fix a bug when ordering the variables 2012-04-21 17:14:19 +01:00
Vitor Santos Costa
22f702f8e4 ddnnfs. 2012-04-20 16:43:30 -05:00
Vitor Santos Costa
220f7e6efc support mtbdds. 2012-04-20 16:42:59 -05:00
Tiago Gomes
085ebe1e96 check for overflows when performing expansion 
case the factor size after expansion be bigger than an unsigned integer, abort the program
 2012-04-20 17:16:10 +01:00
Tiago Gomes
0ffa409a80 fix a bug when expanding potential 2012-04-20 14:50:14 +01:00
Vitor Santos Costa
178ad27db8 better understanding of ddnnf. 2012-04-20 07:07:19 -05:00
Tiago Gomes
09697b8461 heuristic to improve results with fove 2012-04-19 18:37:15 +01:00
Tiago Gomes
2b7da4bc23 refactor the way we calculate the grounding cost 2012-04-19 17:59:45 +01:00
Tiago Gomes
661ce08961 check if the factor is not zero when choosing the elimination order 2012-04-19 12:08:27 +01:00
Tiago Gomes
cd1e157019 sort the colors in the signature receveied from a factor (add std namespace) 2012-04-18 19:29:43 +01:00
Tiago Gomes
7c100c96bc sort the colors in the signature receveied from a factor 2012-04-18 19:29:11 +01:00
Tiago Gomes
862e90a36b fix bug in joining constraint trees 2012-04-18 18:14:15 +01:00
Tiago Gomes
61ee95d92a use logarithms to calculate the cost of each fove operator 2012-04-18 16:40:12 +01:00
Tiago Gomes
406276b62b add missing scripts 2012-04-18 13:53:34 +01:00
Tiago Gomes
a7f57bea99 several optimizations on ConstraintTree 2012-04-18 03:05:01 +01:00
Tiago Gomes
cd720497f8 update groups when shattering 2012-04-18 03:04:06 +01:00
Tiago Gomes
bb5d02dbc0 minor updates 2012-04-18 03:03:29 +01:00
Tiago Gomes
dacf6b4e57 update examples 2012-04-18 02:57:24 +01:00
Tiago Gomes
d22b5a97fd add missing scripts 2012-04-18 02:52:31 +01:00
Tiago Gomes
b7e9245f26 refactor and add more benchmarks scripts 2012-04-18 02:49:33 +01:00
Tiago Gomes
d8e757f9ab improvements in the way factorials are computed 2012-04-18 02:46:38 +01:00
Tiago Gomes
cd8714460e add a way of calculate factorials of large numbers 2012-04-17 20:24:40 +01:00
Tiago Gomes
f02d0fb798 add more api to sorted vector implementation 2012-04-17 19:02:56 +01:00
Vítor Santos Costa
40ce9feb76 bdd experiments 2012-04-16 23:47:36 +01:00
Tiago Gomes
5e88510a7d use convenience function 2012-04-16 21:48:13 +01:00
Tiago Gomes
6ab5a4668b change align of some functions 2012-04-16 21:47:06 +01:00
Tiago Gomes
dd0ae564ef adapt to changes in CFactorGraph 2012-04-16 21:45:52 +01:00
Tiago Gomes
779f4ea2ce fix debuging information and s/ds/range 2012-04-16 21:44:04 +01:00
Tiago Gomes
66353e67ec some refactorings 2012-04-16 21:42:14 +01:00
Tiago Gomes
0d5888e238 assign evidence to the pruned factor graph 2012-04-16 21:40:28 +01:00
Tiago Gomes
b27500e93f add nrVarNodes and nrFacNodes 2012-04-16 19:29:55 +01:00
Tiago Gomes
6f7d2af718 add another sorted vector implementation 2012-04-15 21:51:12 +01:00
Tiago Gomes
c32ad3de0a use a sorted vector to store the node childs 2012-04-15 21:44:27 +01:00
Tiago Gomes
5e7b660f44 use iterators instead off indices 2012-04-15 03:19:15 +01:00
Vítor Santos Costa
c385dc13a8 fix syntax 2012-04-15 00:02:37 +01:00
Tiago Gomes
62fedf014b workaround garbage collector error 2012-04-14 18:00:12 +01:00
Tiago Gomes
f1d2889eaa fix warning about uninitialized var 2012-04-14 17:59:04 +01:00
Tiago Gomes
401ad145a5 improve the way the factor graph is constructed from a set from factors 2012-04-14 17:57:24 +01:00
Tiago Gomes
f6e3bb4481 don't assert when suming numbers with negative infinity 2012-04-13 23:12:12 +01:00
Tiago Gomes
24a5fe9c23 add typedef 2012-04-13 15:56:37 +01:00
Tiago Gomes
05ef8610f4 fix warning 2012-04-13 15:47:41 +01:00
Tiago Gomes
00faccd940 implement a printSolverParameters in ground solvers 2012-04-13 15:22:24 +01:00
Tiago Gomes
f3be68a552 add a way to print bool vars 2012-04-13 15:21:11 +01:00
Tiago Gomes
15c8f3abc6 ops 2012-04-12 18:46:21 +01:00
Tiago Gomes
5348c4a989 comment debug information in some prolog files 2012-04-12 18:35:29 +01:00
Vítor Santos Costa
5a8cc421d2 small pfl fixes. 2012-04-12 18:11:29 +01:00
Vítor Santos Costa
c5f42cd7eb more pfl changes. 2012-04-12 17:24:39 +01:00
Vítor Santos Costa
8c2dd1f847 fix bad call for parameters. 2012-04-12 17:17:21 +01:00
Vítor Santos Costa
28ce2da3dc Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-04-12 17:07:19 +01:00
Tiago Gomes
9def6c2b15 tempary hack to fix cbp and clean in benchs.sh 2012-04-12 00:42:55 +01:00
Tiago Gomes
564958ef8d improvements on benchmarkings 2012-04-11 23:48:59 +01:00
Tiago Gomes
03013960d3 refactor the city benchmarks and introduce set_solver/1 2012-04-11 19:15:52 +01:00
Tiago Gomes
f2fbbf29d8 rework the examples and erase the city network in the old format 2012-04-11 15:36:50 +01:00
Tiago Gomes
8697fcd2b4 refactorings 2012-04-10 20:43:08 +01:00
Tiago Gomes
78e86a6330 refactor ground solver interface 2012-04-10 15:00:18 +01:00
Tiago Gomes
46e6a10625 convert city dataset to new format 2012-04-10 12:56:14 +01:00
Tiago Gomes
b52dc99914 refactorings 2012-04-10 12:53:52 +01:00
Tiago Gomes
aa1b2e40ea some renamings 2012-04-10 11:51:56 +01:00
Tiago Gomes
6986e8c0d7 Improvements 
Factor nodes now contain a factor object instead of a pointer. Refactor the way .fg and .uai formats are readed.
 2012-04-09 15:40:51 +01:00
Tiago Gomes
f1d52c0389 add missing files 2012-04-05 23:04:27 +01:00
Tiago Gomes
d1b25f0864 renamings and delete bn_bp stuff 2012-04-05 23:00:48 +01:00
Tiago Gomes
b28ee8fb3a drop bayesian network representation 2012-04-05 20:08:54 +01:00
Tiago Gomes
abb0410d07 drop suport for Pearl belief propagation 2012-04-05 19:34:37 +01:00
Tiago Gomes
0d23591058 Add support to markov networks 2012-04-05 18:38:56 +01:00
Vítor Santos Costa
bc2364c5dc small fixes 2012-04-04 08:29:20 +01:00
Tiago Gomes
6c3add2ebd first steps in adapting horus ground solvers to pfl 2012-04-03 19:53:27 +01:00
Vítor Santos Costa
2bdec8f725 more PFL fixes. 2012-04-03 17:12:58 +01:00
Vítor Santos Costa
14d142aa10 new example. 2012-04-03 16:23:26 +01:00
Vítor Santos Costa
65e0c3b2a2 more PFL changes. 2012-04-03 16:22:40 +01:00
Vítor Santos Costa
6ccd458ea5 Merge branch 'master' of https://github.com/tacgomes/yap6.3 
Conflicts:
	packages/CLPBN/clpbn/bp.yap
	packages/CLPBN/clpbn/fove.yap
	packages/CLPBN/clpbn/horus.yap
 2012-04-03 15:07:22 +01:00
Vítor Santos Costa
44cb6abcb6 PFL support. 2012-04-03 15:01:35 +01:00
Vítor Santos Costa
e130c26c6d improve bdd support. 2012-04-03 15:01:14 +01:00
Vítor Santos Costa
3d216cf9db iextend bdd support. 2012-04-03 15:00:22 +01:00
Tiago Gomes
911b241ad6 fix align of logical variables 2012-04-03 11:58:21 +01:00
Tiago Gomes
fd8980642b another test 2012-04-01 00:23:03 +01:00
tgomes
c6128c51e8 this is a test 2012-03-31 23:59:05 +01:00
Tiago Gomes
e9cc1a8be2 remove unnecessary files 2012-03-31 23:44:08 +01:00
Tiago Gomes
313f9a036a yay, my first commit 2012-03-31 23:27:37 +01:00
Vítor Santos Costa
3563dcbf03 control for very large bdds. 2012-03-30 09:50:18 +01:00
tgomes
24b466db4e new version. 2012-03-29 12:24:29 +01:00
Vítor Santos Costa
0a9076bf4a bdd 2012-03-28 10:59:26 +01:00
Vítor Santos Costa
9ff1399482 new versions of packages. 2012-03-27 14:59:22 +01:00
Vítor Santos Costa
295cf24f5c extend functionality. 2012-03-27 14:57:43 +01:00
Vítor Santos Costa
cd45c64dcc allow optimisation and preserve ordering. 2012-03-27 14:57:12 +01:00
Vítor Santos Costa
52e5fdb6aa fix typo and export extra 2012-03-25 21:42:49 +01:00
Vítor Santos Costa
7d6b2435e0 fix typo and export extra 2012-03-25 21:42:39 +01:00
Vítor Santos Costa
a38177207d use safer method 2012-03-25 21:41:03 +01:00
Vítor Santos Costa
b6d5b79789 force parent unification when binding two variables with same key 2012-03-25 21:40:29 +01:00
Vítor Santos Costa
7d6461a527 fix order. 2012-03-23 22:26:31 +00:00
Vítor Santos Costa
07335ce047 clp(bn) support 2012-03-22 23:24:09 +00:00
Vítor Santos Costa
6b1574757e fix dist usage. 2012-03-22 22:32:50 +00:00
Vítor Santos Costa
f5f13541c6 old new syntax 2012-03-22 22:23:20 +00:00
Vítor Santos Costa
4c1602b74b old syntax example. 2012-03-22 22:22:16 +00:00
Vítor Santos Costa
6ad2c9b3a9 experimental BDD interface package. 2012-03-22 21:36:44 +00:00
Vítor Santos Costa
a338b95d3f add more support for FOVE. 2012-03-22 19:10:15 +00:00
Vítor Santos Costa
7d4f83ca40 improve examples. 2012-03-22 19:09:31 +00:00
Vítor Santos Costa
172f59cee5 ifix interface to clp(bn) machinery. 2012-03-22 19:08:36 +00:00
Vitor Santos Costa
c85e76f20f new fove version. 2012-03-22 11:40:24 +00:00
Vitor Santos Costa
6191dd210b new version 2012-03-22 11:35:54 +00:00
Vitor Santos Costa
21d317b223 new version of bp 2012-03-22 11:33:24 +00:00
Vitor Santos Costa
6e36498cac new version. 2012-03-22 11:29:46 +00:00
Vítor Santos Costa
8ba0bee7ab updates to packages. 2012-02-17 11:31:55 +00:00
Vítor Santos Costa
48cbed8b20 update to latest release. 2012-02-14 18:58:12 +00:00
Vítor Santos Costa
8c556f21ba include XMLPL package. 2012-02-14 12:41:12 +00:00
Vitor Santos Costa
247aa54046 back to using YAP writer. 2012-02-13 23:07:31 +00:00
Vítor Santos Costa
fc4edc3ad1 update version. 2012-02-13 19:30:00 +00:00
Vítor Santos Costa
70b41fbdb7 iupdate packages. 2012-02-13 11:26:23 +00:00
Vítor Santos Costa
dd762fe664 new versions. 2012-02-13 10:35:05 +00:00
Vítor Santos Costa
32d953809e update packages. 2012-02-13 09:43:50 +00:00
Vítor Santos Costa
64319f622f better SWI support. 2012-02-13 09:41:22 +00:00
Vítor Santos Costa
ea18699602 JPL support patches. 2012-02-12 12:28:37 +00:00
Vítor Santos Costa
73b1a8d6f8 change R configuration. 2012-02-06 11:01:10 +00:00
Vítor Santos Costa
e6fb330f58 fix warnings. 2012-02-03 20:55:35 +00:00
Vítor Santos Costa
ab33cacf7b LAM MPI interface support. 2012-02-02 23:25:31 +00:00
Vítor Santos Costa
4e6cc28cd3 lam support. 2012-02-02 09:58:05 +00:00
Vítor Santos Costa
dddf5bce80 update 2012-02-01 21:01:24 +00:00
Vítor Santos Costa
c4ee7ee0c3 Merge branch 'master' of ssh://git.dcc.fc.up.pt/yap-6.3 
Conflicts:
	.gitmodules
	configure
	packages/real
 2012-02-01 20:57:42 +00:00
Vítor Santos Costa
4c6164034e real stuff. 2012-02-01 20:50:57 +00:00
Vítor Santos Costa
7a99e4f974 fix openmpi/lam detection under Linux/UBUNTU 
fix -I in R interface.
 2012-02-01 10:26:04 +00:00
Vítor Santos Costa
d106c08f8c :make sure we get rid of YapR 2012-02-01 08:58:20 +00:00
Vítor Santos Costa
7fc23ea139 update latest r..eal 2012-02-01 08:49:06 +00:00
Vítor Santos Costa
c6a8f68e67 update to recent real. 2012-01-31 15:15:07 +00:00
Vítor Santos Costa
e4bfd98830 use real package shared with swi. 2012-01-31 15:11:39 +00:00
Vítor Santos Costa
ed0d3f6cae Latest ProbLog 2012-01-11 14:44:59 +00:00
Vítor Santos Costa
2e2e2deb91 new version 2012-01-10 18:50:24 +00:00
Vítor Santos Costa
a25c97c295 fove initial skeleton.w 2012-01-10 17:01:06 +00:00
Vitor Santos Costa
3f97a3f24a new version 2012-01-09 23:31:30 +00:00
Vítor Santos Costa
bf12f320fe fix CPT handling in aggregates. 2011-12-27 22:08:21 +00:00
Vítor Santos Costa
8f3eabef1d support parfactors, first step. 2011-12-27 22:07:42 +00:00
Vítor Santos Costa
d01eec1dbe iupdate changes. 2011-12-22 11:43:30 +00:00
Vítor Santos Costa
7df0fd90f5 Changes by Tiago 2011-12-12 15:30:24 +00:00
Vítor Santos Costa
33bf0bc0f5 new release from Tiago 2011-12-12 15:29:51 +00:00
Vítor Santos Costa
03391e3feb New Version From Tiago 2011-12-10 23:12:10 +00:00
Vítor Santos Costa
dbcb6e530c New Version From Tiago 2011-12-10 22:58:43 +00:00
Vítor Santos Costa
1a4e31e7a0 fix MKINDEX call 2011-12-02 23:09:04 +00:00
Vítor Santos Costa
79d1bf5eec Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 
Conflicts:
	OPTYap/opt.config.h
	OPTYap/opt.structs.h
 2011-11-30 13:24:12 +00:00
Vítor Santos Costa
fec7019a79 fix some warnings 
improve thread support.
 2011-11-30 13:05:21 +00:00
Vítor Santos Costa
2f6ec5ff59 improve learning for CLP(BN). 2011-11-30 13:04:13 +00:00
Vítor Santos Costa
6c1cf7ea39 update to OSX support. 2011-11-18 22:24:46 +00:00
Vítor Santos Costa
e33712403f fix prism compilation and PRISM overflow handling. 2011-11-18 18:33:22 +00:00
Vítor Santos Costa
ae29efec0c iupdate version. 2011-11-18 16:26:41 +00:00
Vítor Santos Costa
0334632e6e improvements to YapR. 2011-11-17 12:58:22 +00:00
Vitor Santos Costa
fedf37ee35 update yapr 2011-11-15 12:59:00 +00:00
Vítor Santos Costa
946887d3b8 update ! 2011-11-15 12:46:03 +00:00
Vítor Santos Costa
df949efdb3 fix god knows what. 2011-11-15 12:40:55 +00:00
U-WIN7\Vitor
a2917e4e9e support R in WIN32. 2011-11-15 04:37:21 -08:00
Vítor Santos Costa
79bcde0869 fix variable that belongs to Makefile.in 2011-11-15 11:18:16 +00:00
Vítor Santos Costa
b7d9e63c17 ifix clib Makefile.in 2011-11-15 11:17:00 +00:00
Vitor Santos Costa
71bedb75f2 fix configuration script to better recognsie R. 2011-11-15 10:22:03 +00:00