acb4bf610f
Clean HorusYap a bit
2013-02-16 01:54:11 +00:00
bf1ba17855
Fix typos detected by cppcheck
2013-02-13 23:47:00 +00:00
57f46e7c0d
Fix printed string showed when file opening fails
2013-02-13 19:18:55 +00:00
ab7f4c8113
Fix namespace name
2013-02-13 19:09:11 +00:00
ef4ebb4d7f
Use camel case for constants and enumerators.
...
All capitals case should be reserved for macros and besides there is no big need to emphasize constness in general.
2013-02-13 18:54:15 +00:00
afd26ed9b4
Trivial
2013-02-13 15:25:55 +00:00
bd70033c06
Disallow copy and assign for Var too
2013-02-13 14:42:24 +00:00
2bc123d72c
Update class, struct and enum bracket style
2013-02-13 14:26:47 +00:00
e178c1af04
Change namespace name to be in Pascal case
2013-02-08 21:12:46 +00:00
6a1a209ee3
Revert "Improve namespace names"
...
This reverts commit 973df43fe0
2013-02-08 21:01:53 +00:00
264ef7a067
Clean a bit LiftedWCNF class
2013-02-08 12:12:45 +00:00
bff56c75ca
Trivial
2013-02-08 01:11:18 +00:00
98842dca74
Trivial
2013-02-08 00:56:42 +00:00
c41b6d80b6
Trivial
2013-02-08 00:28:32 +00:00
cd8a25162e
Trivial
2013-02-08 00:22:51 +00:00
206cf0a9c7
Trivial
2013-02-08 00:20:01 +00:00
973df43fe0
Improve namespace names
2013-02-08 00:15:41 +00:00
6f83ceb6f5
Put the code inside a horus namespace
2013-02-07 23:53:13 +00:00
4267465f53
Trivial
2013-02-07 22:41:04 +00:00
3738d0b2c6
Move some things around. No functional changes
2013-02-07 22:37:45 +00:00
2992f9e3cf
Trivial
2013-02-07 20:54:59 +00:00
5c84a2f532
Improve includes
2013-02-07 20:09:10 +00:00
544d0aa39e
Improve header guards (again)
2013-02-07 17:50:33 +00:00
bb7a530da3
Avoid importing the std namespace
2013-02-07 13:37:15 +00:00
7b60e88545
Improve Header guards
2013-02-06 22:58:42 +00:00
80452bf75d
Small improvements
2013-02-06 00:29:29 +00:00
42a5bc493a
Move methods with more than two lines to outside of class definition
2013-02-06 00:29:03 +00:00
0d9d59f5fe
Trivial
2013-01-25 13:58:30 +00:00
bef65dac57
Fix a compilation error with older versions of GCC
2013-01-25 13:47:20 +00:00
9dfedafe98
PFL manual: small improvements
2013-01-25 13:45:35 +00:00
5683258187
PFL manual: fix typo
2013-01-16 08:53:09 +00:00
6cad8969c6
Put solver always as the first argument
2013-01-15 12:27:21 +00:00
83ccb31665
PFL manual: rework the parameter learning section
2013-01-12 12:30:34 +00:00
90614d3594
PFL manual: minor tweaks
2013-01-12 12:30:14 +00:00
3ecc65b816
PFL manual: fix typo, is sprinkler not sprinker
2013-01-11 21:15:01 +00:00
509491cd0f
PFL manual: improve the way we present the solver options
2013-01-11 19:39:27 +00:00
8c8e2b034f
Improve a bit the learning examples
2013-01-11 00:16:56 +00:00
8285b8e1e4
Cuttify\!
2013-01-10 23:38:46 +00:00
8f9b11cc7c
Comment set_em_solver so that hve becomes that default
2013-01-10 23:04:17 +00:00
4aa4cb50b0
Switch solver order in examples
2013-01-10 23:02:34 +00:00
f3bd8ad414
Use the word option instead of key. Key reminds me of hashes
2013-01-10 22:59:12 +00:00
f7fcfec8ce
PFL manual: some rewording
2013-01-10 22:42:23 +00:00
d3e2abd677
Don't use the name horus in documentation.
...
It is just an internal code name.
2013-01-10 22:39:46 +00:00
fdeca2852a
Use only one interface for options.
...
set_pfl_flag/2 now can be called for setting options for solvers written in Prolog and for solvers in Horus.
2013-01-10 22:10:22 +00:00
e5e224d89b
Fix typo
2013-01-10 21:51:45 +00:00
bd84949f09
Trivial
2013-01-10 17:23:09 +00:00
1bb1138b3a
Fix EM typos
2013-01-10 13:45:24 +00:00
b7ef6576a6
add keys within learning
2013-01-09 18:34:19 +00:00
6cee85bd60
fix cases where you get repeated keys or a(X,X) keys in PFL.
2013-01-09 18:22:01 +00:00
46fbc539bf
handle repeated query vars with evidence
2013-01-09 17:49:07 +00:00
2feac46e54
PFL manual: several improvements
2013-01-09 16:45:01 +00:00
7f452d2397
Refactor the benchmarks
2013-01-09 15:25:14 +00:00
7fabfcf4c9
Trivial
2013-01-09 11:43:40 +00:00
24271157ce
Clean unecessary latex documents
2013-01-08 22:55:27 +00:00
59ae52623c
PFL manual: several improvements
2013-01-08 22:51:44 +00:00
6755e50525
PFL manual: small improvements
2013-01-08 22:00:31 +00:00
ea054468bc
Improve hcli usage string
2013-01-08 21:17:56 +00:00
dc536fabc2
Beautify setHorusFlag
2013-01-08 21:13:58 +00:00
2738d83302
Remove some alias for hve
2013-01-08 20:48:46 +00:00
dfd7360291
Allow the use of solver as an alias of ground_solver
2013-01-08 20:47:12 +00:00
dbd35a20a2
PFL manual: improve introduction section
2013-01-08 19:40:20 +00:00
9c8fd804df
PFL manual: add a further information section
2013-01-08 19:39:39 +00:00
f94032d06c
PFL manual: add an installation section
2013-01-08 19:39:03 +00:00
1b9c4e96e7
Prefix with bp_ some bp flags
2013-01-08 17:06:40 +00:00
da0514a779
Add support for more infernce keys.
...
Add support for export_libdai, export_uai, export_gv and print_fg.
Document these keys.
2013-01-08 17:01:03 +00:00
4220069d90
PFL manual: use the Unix end-of-line marker
2013-01-08 15:34:56 +00:00
75b652b0c9
PFL manual: improve title page and reword a sentence
2013-01-08 15:33:55 +00:00
6375d05a93
PFL manual: add section for horus cli
2013-01-08 15:31:52 +00:00
182429252e
Update the usage string for hcli
2013-01-08 14:47:21 +00:00
c92b7c3e7e
Install hcli to the bin directory
2013-01-08 00:33:01 +00:00
f598881cc5
Explain better the potential value order
2013-01-07 22:21:52 +00:00
9bb43360a2
Rearrange the probabilities to do a clean diff against the exported model
2013-01-07 22:18:50 +00:00
ba32ebc5f5
Add support for bayesian networks defined in an UAI file format
2013-01-07 22:17:05 +00:00
82a4cc508b
Change burglary-alarm.uai to be bayes instead of markov
2013-01-07 22:01:49 +00:00
bafd7320a5
Rework a bit the examples
2013-01-07 14:59:51 +00:00
91dbd60ad4
Allow calling set_horus_flag/2 without loading clpbn_horus
2013-01-07 14:05:56 +00:00
96f4e7ea1b
Fix typo
2013-01-07 14:04:44 +00:00
ec2d9e0967
Trivial
2013-01-05 12:04:43 +00:00
f0768e76f2
Improve Makefile
2013-01-05 01:02:19 +00:00
f55ccdef33
Add a manual for PFL written in Latex
2013-01-05 00:49:39 +00:00
c5a390460d
Chanse use_logarithms default to true.
...
Reasoning:
- In small networks, the use of logarithms is not noticed in terms of performance.
- In large networks, the chance to have a division by 0 is too high when not using logarithms.
2013-01-04 19:48:31 +00:00
f2682374fb
Forgot to update the Makefile in the previous commit
2013-01-04 15:42:03 +00:00
3347f0e676
Rename two examples
2013-01-03 23:44:30 +00:00
d4d11cd4b4
Fix sprinkler probability order
2013-01-03 18:48:15 +00:00
ea5dbe2bca
Trivial
2013-01-03 18:26:12 +00:00
d293c5e5a9
Trivial
2012-12-28 15:40:32 +00:00
3363019c93
Remove unnecessary methods
2012-12-28 01:35:59 +00:00
7d9af75c35
Improve solver flags
2012-12-27 23:21:32 +00:00
d36b63ece3
Trivial
2012-12-27 22:29:20 +00:00
c96496720b
Trivial
2012-12-27 22:28:19 +00:00
485c3e34b2
Use more DISALLOW_COPY_AND_ASSIGN
2012-12-27 22:25:45 +00:00
7b7f663ac6
Don't use public members for solver flags
2012-12-27 15:44:40 +00:00
b996436b24
Reorganize
2012-12-27 15:05:40 +00:00
de0a118ae5
Move belief propagation stuff out from Horus.h
2012-12-27 15:00:30 +00:00
cbea630fbf
Cosmetic fixes
2012-12-27 12:54:58 +00:00
8bdcb65907
Improve variable elimination
2012-12-26 22:55:48 +00:00
188f359496
Fix a warning about a unitialized var
2012-12-26 21:48:05 +00:00
d8c5725b2e
This shouldn't be on the repository
2012-12-21 15:20:28 +00:00
4b901d26d7
Improve error messages
2012-12-20 23:34:53 +00:00
01d8f8e178
More whitespace cleanups
2012-12-20 23:19:10 +00:00
421d6f72ee
Place the constructor on the right place
2012-12-20 21:32:40 +00:00
57339760b9
Merge LiftedKc and LiftedCircuit in one file
2012-12-20 21:11:51 +00:00
b44ed7db39
Improve the error messages
2012-12-20 18:07:50 +00:00
685f46dc27
Fix
2012-12-20 17:41:52 +00:00
053fa31bb2
Exit is better than abort.
...
Also use a macro instead of integer to indicate failure.
2012-12-20 17:37:59 +00:00
2ca31ca14a
Don't abort if opening a file to export to graphviz fails
2012-12-20 17:11:11 +00:00
af8497af6e
Sort the logical vars of the constraint tree when exporting to graphviz
2012-12-20 16:20:38 +00:00
046af409ba
Change the default solver to be hve
2012-12-19 18:25:47 +00:00
c407594146
Whitespace clean
2012-12-19 18:22:47 +00:00
60ff9daafd
Remove old example
2012-12-19 18:13:47 +00:00
48254ba7d7
Lkc: fix some memory leaks
2012-12-19 17:45:53 +00:00
2d1f5edc91
There is no more to do
2012-12-18 23:52:56 +00:00
691188d5c9
Handle better formulas like f(X,X)
2012-12-18 23:51:51 +00:00
0a661b0462
More cleanups
2012-12-18 22:47:43 +00:00
4b0acbf8c1
Cleanups
2012-12-18 12:11:45 +00:00
c7a4adcefb
Fix finalizing horus ground solvers on EM
2012-12-17 23:59:52 +00:00
5fa5dda579
Remove BP from clpbn interface to EM
2012-12-17 23:29:21 +00:00
e1c862ebbe
Refactor the way we set the inference solver
2012-12-17 23:14:54 +00:00
f1499f99f3
Introduce set_em_solver and use it
2012-12-17 21:19:47 +00:00
40a72a0a63
Improve error handling for choosing EM solver
2012-12-17 21:03:13 +00:00
9861f4aadb
Is the EM solver that we want
2012-12-17 18:50:36 +00:00
3eb6b76ddd
Whitespace clean
2012-12-17 18:39:42 +00:00
2f2f88e571
Several whitespace fixes
2012-12-17 17:57:00 +00:00
409a230826
Use the same convetion for module import and export
2012-12-17 14:50:12 +00:00
2738c0fb56
Use tabs instead of spaces for consistency
2012-12-17 12:13:08 +00:00
d03ea1509e
Trivial
2012-12-17 11:56:15 +00:00
e35cf51476
Reorders and some reindentation
2012-12-17 11:53:57 +00:00
9ff9be2f49
Don't pass around the Solver for EM
2012-12-15 16:11:03 +00:00
81ac6f1913
Don't pass around the Solver in run_horus_ground_solver
2012-12-15 15:56:05 +00:00
ea931f2f93
Comment
2012-12-15 00:41:00 +00:00
55292ab745
Clean ups and don't forget cbp
2012-12-15 00:29:03 +00:00
1174486576
VE???
2012-12-15 00:16:06 +00:00
2996a0b8b3
Comment does not apply
2012-12-15 00:14:45 +00:00
e5479ff17c
CLPBNs first, PFLs next
2012-12-15 00:13:53 +00:00
971b8b7487
Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3
2012-12-13 23:48:16 +00:00
eea7ce2885
Fix file names
2012-12-13 19:02:04 +00:00
0594d43539
Cosmetic fixes
2012-12-13 17:51:43 +00:00
05e53eaf37
Merge sch32 and school32_data and rename to school_32
2012-12-13 17:08:54 +00:00
6b8301d9c4
CLP(BN) is dead. Long live the PFL
2012-12-13 17:04:14 +00:00
d78baa48a1
Don't special case the tables in city.pfl
...
Its hard to make them work in lifted networks
:
2012-12-13 16:50:39 +00:00
c4448d066a
allow backtracking over possible values of constraints.a
2012-12-13 15:53:01 +00:00
8b996c5dc9
Lkc: show that we exported the circuit to graphviz when debugging
2012-12-13 14:21:16 +00:00
48413deae7
Ops: deleted this by accident in the previous commit
2012-12-13 14:08:16 +00:00
dd8a92aaf3
Merge with upstream code
2012-12-13 12:55:55 +00:00
11e688ffd7
Lkc: use utility function
2012-12-12 21:19:22 +00:00
f2173d001e
Lkc: fix bug when adding weights
2012-12-12 21:16:36 +00:00
c7588c9361
Trivial
2012-12-12 17:03:11 +00:00
4683d30d8e
Trivial
2012-12-12 17:01:30 +00:00
39bf95fe2b
trivial
2012-12-12 16:28:18 +00:00
8eb657aec2
Change extension of school parschema to pfl
2012-12-12 16:00:21 +00:00
Tiago Gomes
Vitor Santos Costa
tagomes@fc.up.pt