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2259 Commits

Author SHA1 Message Date
Vitor Santos Costa
f1cbc7f3be improved mln stuff 2013-06-07 18:22:42 -05:00
Vitor Santos Costa
23a787bcb3 mlns in PFL 2013-06-06 19:22:22 -05:00
Vitor Santos Costa
6b31d08633 mlns in PFL 2013-06-06 19:18:46 -05:00
Vítor Santos Costa
ea3f25c378 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-04-16 21:26:41 -05:00
Vitor Santos Costa
cb08a542e2 get rid of comments 2013-04-16 21:14:05 +01:00
Vitor Santos Costa
1c9cc469d5 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-04-16 21:11:51 +01:00
Tiago Gomes
9e57b32431 Fix compilation with older versions of GCC 2013-04-16 21:07:03 +01:00
Vítor Santos Costa
e5d5352268 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-04-16 07:53:01 -05:00
Vitor Santos Costa
78410ade1a ensure evidence does not go away, make sure YAP compiles 2013-04-15 19:12:53 -05:00
Tiago Gomes
9e9ad24c90 Small updates to latex docs 2013-04-13 12:43:52 +01:00
Tiago Gomes
761406fa46 Small updates to html docs 2013-04-13 12:33:48 +01:00
Tiago Gomes
745a034d43 Reduce the size of the section labels 2013-04-13 00:49:59 +01:00
Tiago Gomes
cb6715664b Create a HTML version of the manual 2013-04-12 23:49:12 +01:00
Tiago Gomes
3405a8895b Small updates to manual 2013-04-12 23:48:25 +01:00
Tiago Gomes
fc2530fbe2 It appears that 'make install' on top level calls 'make all' on the horus makefile 2013-04-11 23:16:51 +01:00
Tiago Gomes
7ecfb999d5 Style change 2013-04-11 23:06:13 +01:00
Tiago Gomes
de6d7981fb Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-04-11 22:28:41 +01:00
Vítor Santos Costa
23d2f7b8e5 more cleanups. 2013-04-07 10:40:42 -05:00
Vítor Santos Costa
4a95575fe1 should always lookup who generates the parameters (not supported in learning). 2013-04-07 09:51:20 -05:00
Vítor Santos Costa
30cc02e4ee Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-04-07 08:18:54 -05:00
Vítor Santos Costa
4ab4f1cab1 allow integer parameters. 2013-04-07 08:18:13 -05:00
Vitor Santos Costa
12799589a8 thread fixes 2013-04-07 00:00:41 +01:00
Tiago Gomes
b13a8b73a1 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-04-04 16:20:18 +01:00
Tiago Gomes
a2e54a235a Factor: improve factor multiplication 
Pass the argument as reference-to-const and also allow chaining of multiplications.
 2013-03-21 21:49:12 +00:00
Tiago Gomes
6da2580c8f Fix c550139c8b 2013-03-21 21:43:27 +00:00
Tiago Gomes
e2ca97c8de Factor: use the default copy constructor 2013-03-21 21:20:28 +00:00
Tiago Gomes
389daab83f Oops 2013-03-21 19:29:24 +00:00
Tiago Gomes
da88ffcc78 Watch out for undefined behaviour. 2013-03-18 16:18:47 +00:00
Tiago Gomes
c550139c8b Add more assertations to Factor class. 
SumOutFirstVariable and SumOutLastVariable will only are correctly defined if the variable is binary.
 2013-03-18 15:57:10 +00:00
Tiago Gomes
4ca17b9e9b Turn off debug by default 2013-03-18 15:08:06 +00:00
Tiago Gomes
acf83dd0a1 Add some unit tests 2013-03-18 14:42:54 +00:00
Tiago Gomes
403695a7ba Ouch! We were deleting the same links twice 2013-03-18 12:56:36 +00:00
Tiago Gomes
07dba92406 Add a more complex example to be used by unit tests 2013-03-18 11:33:27 +00:00
Tiago Gomes
bc04d28092 Use a static method to create a FactorGraph 2013-03-14 16:57:34 +00:00
Tiago Gomes
2ef1651c6a Add more 2 digits of precision 2013-03-14 16:55:20 +00:00
Tiago Gomes
b5d72f751e We need to reverse the ranges too 2013-03-13 23:22:38 +00:00
Tiago Gomes
d3663d9370 Forgot to call exit 2013-03-13 22:37:04 +00:00
Tiago Gomes
23469e6f94 Initial infrastructure to support CppUnit 2013-03-13 14:47:14 +00:00
Tiago Gomes
5e5feb5674 Improve Makefile 2013-03-12 21:11:43 +00:00
Vítor Santos Costa
7f910c694d fix paths 2013-03-10 15:21:42 -05:00
Vitor Santos Costa
d0858c0d0c remove debugging 2013-03-10 17:24:47 +00:00
Vitor Santos Costa
6397cc9ff7 merge 2013-03-10 17:17:58 +00:00
Vitor Santos Costa
e7146c9a46 new version, thread only. 2013-03-10 17:13:09 +00:00
Vitor Santos Costa
b0b74fd0f8 update 2013-03-10 15:49:37 +00:00
Vitor Santos Costa
f62ea7686a fixes and update 2013-03-10 15:44:23 +00:00
Tiago Gomes
21c401c0dd Move CTNode class to sourcef file 2013-03-09 19:41:17 +00:00
Tiago Gomes
2da7249247 Trivial 2013-03-09 17:14:00 +00:00
Tiago Gomes
a300b27764 BeliefProp: move some members to private section 2013-03-09 16:46:42 +00:00
Tiago Gomes
95539226ea Kill SPNodeInfo class 2013-03-09 16:41:53 +00:00
Tiago Gomes
d563fce952 Var: replace struct by a pair 2013-03-09 16:18:13 +00:00
Tiago Gomes
532654baba Use enum class instead of old enum. 
As we are relying on c++11x for other stuff too.
 2013-03-09 15:39:39 +00:00
Vitor Santos Costa
a5000dab32 change SWI stuff to swi directory. 2013-03-05 15:50:38 -06:00
Tiago Gomes
7193d2238d Move template definitions to source file and use explicite template instantiation. 2013-03-04 17:58:32 +00:00
Tiago Gomes
063f3ff6e3 Forgot to add these two in the previous commit 2013-03-04 17:57:56 +00:00
Tiago Gomes
93fa793683 Separate TFactor and Factor classes. 
Rename TFactor to GenericFactor. GenericFactor.cpp is empty for now.
 2013-03-04 15:47:47 +00:00
Tiago Gomes
98efd54da7 Remove unused member function 2013-03-04 15:10:51 +00:00
Vitor Santos Costa
acf565d91b new version. 2013-03-03 08:54:09 -06:00
Tiago Gomes
902624f557 f(void) vs f() 
"In fact, the f(void) style has been called an "abomination" by Bjarne Stroustrup, the creator of C++, Dennis Ritchie, the co-creator of C, and Doug McIlroy, head of the research department where Unix was born."
 2013-02-28 19:45:37 +00:00
Vitor Santos Costa
b49e9b908b gradient is more complex to compute 2013-02-26 09:39:56 -06:00
Vitor Santos Costa
59d97f83b4 handle negation in tries and add debugging hooks 2013-02-26 09:39:18 -06:00
Tiago Gomes
c8b639f495 Define sortByParams as a local class 2013-02-22 12:35:14 +00:00
Tiago Gomes
0991a84793 Move sortByParams to source file 2013-02-21 00:13:11 +00:00
Tiago Gomes
59c6f5c243 DISALLOW_COPY_AND_ASSIGN should be in the end 2013-02-21 00:06:34 +00:00
Tiago Gomes
f0572e3cfb Move BpLink to inside of BeliefProp 2013-02-20 23:59:03 +00:00
Tiago Gomes
6b0e125e3b Move MsgSchedule enum to inside class BeliefProp. 
Move also SPNodeInfo to inside BeliefProp. Improve also some using of enums.
 2013-02-20 23:34:03 +00:00
Tiago Gomes
ce8152d7a0 Add a comment explaining why we are inlining functions with loops in ElimGraph 2013-02-20 23:08:12 +00:00
Vítor Santos Costa
6f6f578578 fix not handling 2013-02-20 13:10:20 -06:00
Tiago Gomes
1d54a78601 BayesBall: improve encapsulation 2013-02-20 14:13:37 +00:00
Tiago Gomes
9a68d95c18 Turn EGNode to be a nested class inside ElimGraph 2013-02-20 13:49:01 +00:00
Tiago Gomes
8ca379c74a Move ElimHeuristic enum to inside of ElimGraph class 2013-02-20 12:52:55 +00:00
Tiago Gomes
8de22f4f0b Counting Bp: move internal classes to source file 2013-02-20 12:42:05 +00:00
Tiago Gomes
8c2468c28b Improve encapsulation in HorusYap and perform other small refactorings 2013-02-20 11:52:42 +00:00
Tiago Gomes
77dfe50acb LiftedVe: move internal classes to source file 2013-02-20 00:21:01 +00:00
Tiago Gomes
7edfe44576 WeightedBp: remove unnecessary include 2013-02-20 00:13:15 +00:00
Tiago Gomes
74a9eda09d HorusCli: put internal functions in an anonymous namespace 2013-02-20 00:05:45 +00:00
Tiago Gomes
e3439af0a0 LiftedKc: improve header include 2013-02-19 23:59:05 +00:00
Tiago Gomes
e434e87cc8 LiftedKc: remove unnecessary data members 2013-02-19 23:57:22 +00:00
Tiago Gomes
c9543514c5 LiftedKc: move some internal classes to source file 2013-02-19 23:47:46 +00:00
Vítor Santos Costa
638bee41cd fix compilation issues & up-to-date to recente SWI. 2013-02-17 07:32:55 -06:00
Tiago Gomes
b6ee7b4460 Don't extend explicity the life time of returned temporaries. 
That sort of optimization is compiler's work.
 2013-02-16 18:58:22 +00:00
Tiago Gomes
ea49b517e8 Some renamings in ElimGraph 2013-02-16 17:03:12 +00:00
Tiago Gomes
ba79d2e422 Add a source file for Indexer class 
- Move some non-performance critical methods to the source file
- Fix some implicit declarions of members in iomanip
- Fix declaration order in Makefile.in
 2013-02-16 16:42:08 +00:00
Tiago Gomes
0852c4fe22 Clean ups 2013-02-16 16:17:14 +00:00
Tiago Gomes
d0f5d0f9ab Change LiftedOperations to be a namespace instead of class with static member functions 2013-02-16 16:00:53 +00:00
Tiago Gomes
be24ff5160 Fix typos 2013-02-16 15:30:44 +00:00
Tiago Gomes
acb4bf610f Clean HorusYap a bit 2013-02-16 01:54:11 +00:00
Tiago Gomes
bf1ba17855 Fix typos detected by cppcheck 2013-02-13 23:47:00 +00:00
Tiago Gomes
57f46e7c0d Fix printed string showed when file opening fails 2013-02-13 19:18:55 +00:00
Tiago Gomes
ab7f4c8113 Fix namespace name 2013-02-13 19:09:11 +00:00
Tiago Gomes
ef4ebb4d7f Use camel case for constants and enumerators. 
All capitals case should be reserved for macros and besides there is no big need to emphasize constness in general.
 2013-02-13 18:54:15 +00:00
Tiago Gomes
afd26ed9b4 Trivial 2013-02-13 15:25:55 +00:00
Tiago Gomes
bd70033c06 Disallow copy and assign for Var too 2013-02-13 14:42:24 +00:00
Tiago Gomes
2bc123d72c Update class, struct and enum bracket style 2013-02-13 14:26:47 +00:00
Tiago Gomes
e178c1af04 Change namespace name to be in Pascal case 2013-02-08 21:12:46 +00:00
Tiago Gomes
6a1a209ee3 Revert "Improve namespace names" 
This reverts commit 973df43fe0.

On a second thought, namespaces are close to classes in the sense that both encapsulate data, so they should both use Pascal case notation.
 2013-02-08 21:01:53 +00:00
Tiago Gomes
264ef7a067 Clean a bit LiftedWCNF class 2013-02-08 12:12:45 +00:00
Tiago Gomes
bff56c75ca Trivial 2013-02-08 01:11:18 +00:00
Tiago Gomes
98842dca74 Trivial 2013-02-08 00:56:42 +00:00
Tiago Gomes
c41b6d80b6 Trivial 2013-02-08 00:28:32 +00:00
Tiago Gomes
cd8a25162e Trivial 2013-02-08 00:22:51 +00:00
Tiago Gomes
206cf0a9c7 Trivial 2013-02-08 00:20:01 +00:00
Tiago Gomes
973df43fe0 Improve namespace names 2013-02-08 00:15:41 +00:00
Tiago Gomes
6f83ceb6f5 Put the code inside a horus namespace 2013-02-07 23:53:13 +00:00
Tiago Gomes
4267465f53 Trivial 2013-02-07 22:41:04 +00:00
Tiago Gomes
3738d0b2c6 Move some things around. No functional changes 2013-02-07 22:37:45 +00:00
Tiago Gomes
2992f9e3cf Trivial 2013-02-07 20:54:59 +00:00
Tiago Gomes
5c84a2f532 Improve includes 2013-02-07 20:09:10 +00:00
Tiago Gomes
544d0aa39e Improve header guards (again) 2013-02-07 17:50:33 +00:00
Tiago Gomes
bb7a530da3 Avoid importing the std namespace 2013-02-07 13:37:15 +00:00
Tiago Gomes
7b60e88545 Improve Header guards 2013-02-06 22:58:42 +00:00
Tiago Gomes
80452bf75d Small improvements 2013-02-06 00:29:29 +00:00
Tiago Gomes
42a5bc493a Move methods with more than two lines to outside of class definition 2013-02-06 00:29:03 +00:00
Vitor Santos Costa
f873074961 update. 2013-02-05 14:34:55 +00:00
Vítor Santos Costa
02a9709431 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-01-28 09:32:22 +00:00
Vítor Santos Costa
56a22473ea update swi. 2013-01-28 09:31:06 +00:00
Tiago Gomes
0d9d59f5fe Trivial 2013-01-25 13:58:30 +00:00
Tiago Gomes
31bff4dc84 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-01-25 13:50:09 +00:00
Tiago Gomes
bef65dac57 Fix a compilation error with older versions of GCC 2013-01-25 13:47:20 +00:00
Tiago Gomes
9dfedafe98 PFL manual: small improvements 2013-01-25 13:45:35 +00:00
Vitor Santos Costa
8e427074d8 Merge branch 'master' of ssh://git.dcc.fc.up.pt/yap-6.3 2013-01-25 09:35:30 +00:00
Vítor Santos Costa
bbaf1f13d4 upstream 2013-01-25 09:32:48 +00:00
Vítor Santos Costa
c758d23ab4 upstream swi code 2013-01-25 09:32:17 +00:00
Vitor Santos Costa
829c3ec8c4 update to latest swi. 2013-01-24 13:14:07 +00:00
Vitor Santos Costa
8774fed9ff use uninstalled YAP with appropriated libs 2013-01-22 22:22:30 +00:00
Vítor Santos Costa
b24c91eeb3 install chr in bootstrap 2013-01-20 22:55:19 +00:00
Vitor Santos Costa
b25e1fb7e8 update 2013-01-18 14:34:15 +00:00
Tiago Gomes
5683258187 PFL manual: fix typo 2013-01-16 08:53:09 +00:00
Tiago Gomes
6cad8969c6 Put solver always as the first argument 2013-01-15 12:27:21 +00:00
Tiago Gomes
cac748d41a Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-01-14 16:43:46 +00:00
Vítor Santos Costa
ec37045ca3 new versions. 2013-01-13 11:53:58 +00:00
Tiago Gomes
83ccb31665 PFL manual: rework the parameter learning section 2013-01-12 12:30:34 +00:00
Tiago Gomes
90614d3594 PFL manual: minor tweaks 2013-01-12 12:30:14 +00:00
Tiago Gomes
3ecc65b816 PFL manual: fix typo, is sprinkler not sprinker 2013-01-11 21:15:01 +00:00
Tiago Gomes
509491cd0f PFL manual: improve the way we present the solver options 2013-01-11 19:39:27 +00:00
Tiago Gomes
8c8e2b034f Improve a bit the learning examples 2013-01-11 00:16:56 +00:00
Tiago Gomes
8285b8e1e4 Cuttify\! 2013-01-10 23:38:46 +00:00
Tiago Gomes
8f9b11cc7c Comment set_em_solver so that hve becomes that default 2013-01-10 23:04:17 +00:00
Tiago Gomes
4aa4cb50b0 Switch solver order in examples 2013-01-10 23:02:34 +00:00
Tiago Gomes
f3bd8ad414 Use the word option instead of key. Key reminds me of hashes 2013-01-10 22:59:12 +00:00
Tiago Gomes
f7fcfec8ce PFL manual: some rewording 2013-01-10 22:42:23 +00:00
Tiago Gomes
d3e2abd677 Don't use the name horus in documentation. 
It is just an internal code name.
 2013-01-10 22:39:46 +00:00
Tiago Gomes
fdeca2852a Use only one interface for options. 
set_pfl_flag/2 now can be called for setting options for solvers written in Prolog and for solvers in Horus.
 2013-01-10 22:10:22 +00:00
Tiago Gomes
e5e224d89b Fix typo 2013-01-10 21:51:45 +00:00
Tiago Gomes
bd84949f09 Trivial 2013-01-10 17:23:09 +00:00
Tiago Gomes
1bb1138b3a Fix EM typos 2013-01-10 13:45:24 +00:00
Vitor Santos Costa
b7ef6576a6 add keys within learning 2013-01-09 18:34:19 +00:00
Vitor Santos Costa
6cee85bd60 fix cases where you get repeated keys or a(X,X) keys in PFL. 2013-01-09 18:22:01 +00:00
Vitor Santos Costa
46fbc539bf handle repeated query vars with evidence 2013-01-09 17:49:07 +00:00
Vitor Santos Costa
ff953eb20a Merge branch 'master' of https://github.com/tacgomes/yap6.3 2013-01-09 16:48:16 +00:00
tacgomes
2feac46e54 PFL manual: several improvements 2013-01-09 16:45:01 +00:00
tacgomes
7f452d2397 Refactor the benchmarks 2013-01-09 15:25:14 +00:00
tagomes@fc.up.pt
7fabfcf4c9 Trivial 2013-01-09 11:43:40 +00:00
Tiago Gomes
24271157ce Clean unecessary latex documents 2013-01-08 22:55:27 +00:00
Tiago Gomes
59ae52623c PFL manual: several improvements 2013-01-08 22:51:44 +00:00
Tiago Gomes
6755e50525 PFL manual: small improvements 2013-01-08 22:00:31 +00:00
Tiago Gomes
ea054468bc Improve hcli usage string 2013-01-08 21:17:56 +00:00
Tiago Gomes
dc536fabc2 Beautify setHorusFlag 2013-01-08 21:13:58 +00:00
Tiago Gomes
2738d83302 Remove some alias for hve 2013-01-08 20:48:46 +00:00
Tiago Gomes
dfd7360291 Allow the use of solver as an alias of ground_solver 2013-01-08 20:47:12 +00:00
Tiago Gomes
dbd35a20a2 PFL manual: improve introduction section 2013-01-08 19:40:20 +00:00
Tiago Gomes
9c8fd804df PFL manual: add a further information section 2013-01-08 19:39:39 +00:00
Tiago Gomes
f94032d06c PFL manual: add an installation section 2013-01-08 19:39:03 +00:00
Tiago Gomes
1b9c4e96e7 Prefix with bp_ some bp flags 2013-01-08 17:06:40 +00:00
Tiago Gomes
da0514a779 Add support for more infernce keys. 
Add support for export_libdai, export_uai, export_gv and print_fg.
Document these keys.
 2013-01-08 17:01:03 +00:00
Tiago Gomes
4220069d90 PFL manual: use the Unix end-of-line marker 2013-01-08 15:34:56 +00:00
Tiago Gomes
75b652b0c9 PFL manual: improve title page and reword a sentence 2013-01-08 15:33:55 +00:00
Tiago Gomes
6375d05a93 PFL manual: add section for horus cli 2013-01-08 15:31:52 +00:00
Tiago Gomes
182429252e Update the usage string for hcli 2013-01-08 14:47:21 +00:00
Tiago Gomes
c92b7c3e7e Install hcli to the bin directory 2013-01-08 00:33:01 +00:00
Tiago Gomes
f598881cc5 Explain better the potential value order 2013-01-07 22:21:52 +00:00
Tiago Gomes
9bb43360a2 Rearrange the probabilities to do a clean diff against the exported model 2013-01-07 22:18:50 +00:00
Tiago Gomes
ba32ebc5f5 Add support for bayesian networks defined in an UAI file format 2013-01-07 22:17:05 +00:00
Tiago Gomes
82a4cc508b Change burglary-alarm.uai to be bayes instead of markov 2013-01-07 22:01:49 +00:00
Tiago Gomes
bafd7320a5 Rework a bit the examples 2013-01-07 14:59:51 +00:00
Tiago Gomes
91dbd60ad4 Allow calling set_horus_flag/2 without loading clpbn_horus 2013-01-07 14:05:56 +00:00
Tiago Gomes
96f4e7ea1b Fix typo 2013-01-07 14:04:44 +00:00
David Vaz
cdc15e8cd8 merge with yap-6.3 2013-01-06 20:09:48 +00:00
Tiago Gomes
ec2d9e0967 Trivial 2013-01-05 12:04:43 +00:00
Tiago Gomes
f0768e76f2 Improve Makefile 2013-01-05 01:02:19 +00:00
Tiago Gomes
f55ccdef33 Add a manual for PFL written in Latex 2013-01-05 00:49:39 +00:00
Tiago Gomes
c5a390460d Chanse use_logarithms default to true. 
Reasoning:
- In small networks, the use of logarithms is not noticed in terms of performance.
- In large networks, the chance to have a division by 0 is too high when not using logarithms.
 2013-01-04 19:48:31 +00:00
Tiago Gomes
f2682374fb Forgot to update the Makefile in the previous commit 2013-01-04 15:42:03 +00:00
Tiago Gomes
3347f0e676 Rename two examples 2013-01-03 23:44:30 +00:00
Tiago Gomes
d4d11cd4b4 Fix sprinkler probability order 2013-01-03 18:48:15 +00:00
Tiago Gomes
ea5dbe2bca Trivial 2013-01-03 18:26:12 +00:00
Tiago Gomes
d293c5e5a9 Trivial 2012-12-28 15:40:32 +00:00
Tiago Gomes
3363019c93 Remove unnecessary methods 2012-12-28 01:35:59 +00:00
Tiago Gomes
7d9af75c35 Improve solver flags 2012-12-27 23:21:32 +00:00
Tiago Gomes
d36b63ece3 Trivial 2012-12-27 22:29:20 +00:00
Tiago Gomes
c96496720b Trivial 2012-12-27 22:28:19 +00:00
Tiago Gomes
485c3e34b2 Use more DISALLOW_COPY_AND_ASSIGN 2012-12-27 22:25:45 +00:00
Tiago Gomes
7b7f663ac6 Don't use public members for solver flags 2012-12-27 15:44:40 +00:00
Tiago Gomes
b996436b24 Reorganize 2012-12-27 15:05:40 +00:00
Tiago Gomes
de0a118ae5 Move belief propagation stuff out from Horus.h 2012-12-27 15:00:30 +00:00
Tiago Gomes
cbea630fbf Cosmetic fixes 2012-12-27 12:54:58 +00:00
David Vaz
e6c2fa30ee Added uthash to store indexed predicates info 2012-12-27 12:11:14 +00:00
Tiago Gomes
8bdcb65907 Improve variable elimination 2012-12-26 22:55:48 +00:00
Tiago Gomes
188f359496 Fix a warning about a unitialized var 2012-12-26 21:48:05 +00:00
Tiago Gomes
d8c5725b2e This shouldn't be on the repository 2012-12-21 15:20:28 +00:00
Tiago Gomes
4b901d26d7 Improve error messages 2012-12-20 23:34:53 +00:00
Tiago Gomes
01d8f8e178 More whitespace cleanups 2012-12-20 23:19:10 +00:00
Vítor Santos Costa
3565a01f1e upstream 2012-12-20 21:41:06 +00:00
Tiago Gomes
421d6f72ee Place the constructor on the right place 2012-12-20 21:32:40 +00:00
Vitor Santos Costa
4098b9b964 fix compilation MT in win32 2012-12-20 21:15:01 +00:00
Tiago Gomes
57339760b9 Merge LiftedKc and LiftedCircuit in one file 2012-12-20 21:11:51 +00:00
Tiago Gomes
b44ed7db39 Improve the error messages 2012-12-20 18:07:50 +00:00
Tiago Gomes
685f46dc27 Fix 2012-12-20 17:41:52 +00:00
Tiago Gomes
053fa31bb2 Exit is better than abort. 
Also use a macro instead of integer to indicate failure.
 2012-12-20 17:37:59 +00:00
David Vaz
4efa594f0a UDI: more work 2012-12-20 17:13:30 +00:00
Tiago Gomes
2ca31ca14a Don't abort if opening a file to export to graphviz fails 2012-12-20 17:11:11 +00:00
Tiago Gomes
af8497af6e Sort the logical vars of the constraint tree when exporting to graphviz 2012-12-20 16:20:38 +00:00
David Vaz
a655c0bb51 Rtree working as a plugin in UDI 2012-12-20 10:21:55 +00:00
Tiago Gomes
046af409ba Change the default solver to be hve 2012-12-19 18:25:47 +00:00
Tiago Gomes
c407594146 Whitespace clean 2012-12-19 18:22:47 +00:00
Tiago Gomes
60ff9daafd Remove old example 2012-12-19 18:13:47 +00:00
Tiago Gomes
48254ba7d7 Lkc: fix some memory leaks 2012-12-19 17:45:53 +00:00
Tiago Gomes
2d1f5edc91 There is no more to do 2012-12-18 23:52:56 +00:00
Tiago Gomes
691188d5c9 Handle better formulas like f(X,X) 2012-12-18 23:51:51 +00:00
Tiago Gomes
0a661b0462 More cleanups 2012-12-18 22:47:43 +00:00
David Vaz
43e459b8f8 Changes Rtree so almost working 2012-12-18 18:26:59 +00:00
Tiago Gomes
4b0acbf8c1 Cleanups 2012-12-18 12:11:45 +00:00
Tiago Gomes
c7a4adcefb Fix finalizing horus ground solvers on EM 2012-12-17 23:59:52 +00:00
Tiago Gomes
5fa5dda579 Remove BP from clpbn interface to EM 2012-12-17 23:29:21 +00:00
Tiago Gomes
e1c862ebbe Refactor the way we set the inference solver 2012-12-17 23:14:54 +00:00
Tiago Gomes
f1499f99f3 Introduce set_em_solver and use it 2012-12-17 21:19:47 +00:00
Tiago Gomes
40a72a0a63 Improve error handling for choosing EM solver 2012-12-17 21:03:13 +00:00
David Vaz
8511e87e32 packages udi as module 2012-12-17 20:29:59 +00:00
David Vaz
bd25c61fbf New work on UDI 2012-12-17 20:23:03 +00:00
Tiago Gomes
9861f4aadb Is the EM solver that we want 2012-12-17 18:50:36 +00:00
Tiago Gomes
3eb6b76ddd Whitespace clean 2012-12-17 18:39:42 +00:00
Tiago Gomes
2f2f88e571 Several whitespace fixes 2012-12-17 17:57:00 +00:00
Tiago Gomes
409a230826 Use the same convetion for module import and export 2012-12-17 14:50:12 +00:00
Tiago Gomes
2738c0fb56 Use tabs instead of spaces for consistency 2012-12-17 12:13:08 +00:00
Tiago Gomes
d03ea1509e Trivial 2012-12-17 11:56:15 +00:00
Tiago Gomes
e35cf51476 Reorders and some reindentation 2012-12-17 11:53:57 +00:00
Tiago Gomes
9ff9be2f49 Don't pass around the Solver for EM 2012-12-15 16:11:03 +00:00
Tiago Gomes
81ac6f1913 Don't pass around the Solver in run_horus_ground_solver 2012-12-15 15:56:05 +00:00
Tiago Gomes
ea931f2f93 Comment 2012-12-15 00:41:00 +00:00
Tiago Gomes
55292ab745 Clean ups and don't forget cbp 2012-12-15 00:29:03 +00:00
Tiago Gomes
1174486576 VE??? 2012-12-15 00:16:06 +00:00
Tiago Gomes
2996a0b8b3 Comment does not apply 2012-12-15 00:14:45 +00:00
Tiago Gomes
e5479ff17c CLPBNs first, PFLs next 2012-12-15 00:13:53 +00:00
Tiago Gomes
6c95c50eb4 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-12-14 14:05:22 +00:00
Vitor Santos Costa
84b0529060 improve prism compatibility (fix asia). 2012-12-14 08:26:56 +00:00
Tiago Gomes
971b8b7487 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-12-13 23:48:16 +00:00
Tiago Gomes
eea7ce2885 Fix file names 2012-12-13 19:02:04 +00:00
Tiago Gomes
0594d43539 Cosmetic fixes 2012-12-13 17:51:43 +00:00
Tiago Gomes
05e53eaf37 Merge sch32 and school32_data and rename to school_32 2012-12-13 17:08:54 +00:00
Tiago Gomes
6b8301d9c4 CLP(BN) is dead. Long live the PFL 2012-12-13 17:04:14 +00:00
Tiago Gomes
d78baa48a1 Don't special case the tables in city.pfl 
Its hard to make them work in lifted networks
:
 2012-12-13 16:50:39 +00:00
Vitor Santos Costa
c4448d066a allow backtracking over possible values of constraints.a 2012-12-13 15:53:01 +00:00
Tiago Gomes
8b996c5dc9 Lkc: show that we exported the circuit to graphviz when debugging 2012-12-13 14:21:16 +00:00
Tiago Gomes
48413deae7 Ops: deleted this by accident in the previous commit 2012-12-13 14:08:16 +00:00
Tiago Gomes
dd8a92aaf3 Merge with upstream code 2012-12-13 12:55:55 +00:00
Tiago Gomes
11e688ffd7 Lkc: use utility function 2012-12-12 21:19:22 +00:00
Tiago Gomes
f2173d001e Lkc: fix bug when adding weights 2012-12-12 21:16:36 +00:00
Tiago Gomes
c7588c9361 Trivial 2012-12-12 17:03:11 +00:00
Tiago Gomes
4683d30d8e Trivial 2012-12-12 17:01:30 +00:00
Tiago Gomes
39bf95fe2b trivial 2012-12-12 16:28:18 +00:00
Tiago Gomes
8eb657aec2 Change extension of school parschema to pfl 2012-12-12 16:00:21 +00:00
Tiago Gomes
0f46c97481 Trivial 2012-12-12 15:47:09 +00:00
Tiago Gomes
e66ff6777c Be consistent: constraint is always on top 2012-12-12 15:41:41 +00:00
Tiago Gomes
66cd58655b Place the debug_school predicate into a different file 2012-12-12 15:36:38 +00:00
Tiago Gomes
01dfc5e2be Change extension of school_params 
school_params does not define any pfl network, so it shouldn't have pfl as the extension
 2012-12-12 15:26:49 +00:00
Tiago Gomes
108e310a0f Rework the learning examples 2012-12-12 15:16:30 +00:00
Tiago Gomes
f128b6de7a school_32 should use clp(bn) 2012-12-12 00:27:32 +00:00
Tiago Gomes
27a235f65b Remove text explaning pfl. 
The text is badly written and explanaing pfl shouldn't be in *.pfl files, but rather in paper or README file
 2012-12-11 23:36:10 +00:00
Tiago Gomes
4310e42562 rework examples 2012-12-11 23:06:09 +00:00
Tiago Gomes
ccba2d4177 update Makefile to reflect the change of extension to .pfl 2012-12-11 21:02:26 +00:00
Tiago Gomes
1641d1fa30 Remove files that souldn't be in the repository 2012-12-11 16:22:38 +00:00
Tiago Gomes
47bc8f22fc Examples: sprinker was converted from clpbn to pfl 2012-12-11 16:20:55 +00:00
Tiago Gomes
d8a7b7aad6 Examples: change extension to pfl 2012-12-11 16:19:59 +00:00
Tiago Gomes
a59c152962 Lkc: Fix smoothing in atom counting nodes 2012-12-11 16:02:48 +00:00
Tiago Gomes
bb68afe91d Fix an error caused by a temporary being out of scope 2012-12-11 15:52:20 +00:00
Tiago Gomes
1d732594e2 smooth circuit 
Smooth the circuit independent of the verbosity level, but don't smooth it when the compilation has fail.
 2012-12-10 19:39:09 +00:00
Tiago Gomes
8371e395dd fix typo 2012-12-10 19:37:41 +00:00
Tiago Gomes
a25f4584c8 support printing LitLvTypes objects 2012-12-10 18:48:54 +00:00
Tiago Gomes
9c8827c309 always copy clauses for backup 2012-12-09 22:57:39 +00:00
Tiago Gomes
90736156ae some clean ups 2012-12-09 22:13:58 +00:00
Tiago Gomes
e46d2177b7 rework a bit the test infrastructure for lkc 2012-12-09 22:04:33 +00:00
Tiago Gomes
907144db32 don't use a stack for atom counting operator 2012-12-09 19:46:14 +00:00
Tiago Gomes
57a31c2c36 fix showing the weights on edge labels when there is a SetOrNode ancestor 2012-12-09 17:33:36 +00:00
Tiago Gomes
59f653aabd move implementation of copyClauses to another file 2012-12-08 19:32:19 +00:00
Tiago Gomes
4edbcf86b8 Use pointers to refer to clauses for better performance 2012-12-08 19:17:19 +00:00
Vítor Santos Costa
354dbbf802 follow pldoc 2012-12-08 10:52:39 +00:00
Tiago Gomes
73b3594c97 lifted kc: when not debuging don't keep track of the origin clauses 2012-12-07 11:47:50 +00:00
Vitor Santos Costa
b98b09e7de improve utf-8 2012-12-07 08:10:21 +00:00
Vitor Santos Costa
a813a13412 mysqldb interface vs Prolog 2012-12-04 14:49:29 +00:00
Vitor Santos Costa
36ae500118 fixes 2012-12-03 12:39:25 +00:00
Vítor Santos Costa
d9d954abe1 fix handling of methods and classes with named objects: just use PyObject_Call() 2012-12-02 13:19:10 +00:00
Vitor Santos Costa
3c0e16030c imprive python interface 2012-12-01 14:28:25 +00:00
Tiago Gomes
ee1b7dcd21 abort when compilation failed 2012-11-27 16:54:02 +00:00
Vitor Santos Costa
683032432c more examples 2012-11-27 13:50:18 +00:00
Vítor Santos Costa
e529e79582 more progress 2012-11-27 12:10:41 +00:00
Vitor Santos Costa
f1874ecec0 inprove python interface. 2012-11-27 00:16:34 +00:00
Tiago Gomes
610e55a4a2 Improve debbuging for lifted knowledge compilation 2012-11-26 14:46:45 +00:00
Tiago Gomes
1f1d194326 remove unnecessary std set 2012-11-26 14:46:00 +00:00
Tiago Gomes
a2429a1eec Merge branch 'master' of github.com:tacgomes/yap6.3 2012-11-26 11:48:24 +00:00
Vítor Santos Costa
57ac65c83b new swi version. 2012-11-25 23:48:41 +00:00
Vítor Santos Costa
e470dfcdc7 more python stuff. 2012-11-25 23:37:28 +00:00
Vitor Santos Costa
d5b97ac15e quoting. 2012-11-24 12:23:00 +00:00
Tiago Gomes
e09c25bd59 remove grounding stub form lifted knowledge compilation. its hard to implement 2012-11-22 16:34:24 +00:00
Tiago Gomes
4afe6c8161 refactor horus_ground and horus_lifted 2012-11-22 16:33:22 +00:00
Tiago Gomes
992d06656d refactor horus_ground.yap 2012-11-22 15:54:30 +00:00
Vitor Santos Costa
027632456a Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-11-22 12:29:37 +00:00
Vitor Santos Costa
bb4d75f428 avoid messing up lifted solvers 2012-11-22 12:27:33 +00:00
Tiago Gomes
85db763d9c small improvement in HorusYap 2012-11-16 22:38:14 +00:00
Tiago Gomes
51eef45b2d refactor HorusYap 2012-11-16 17:10:04 +00:00
Tiago Gomes
59fd21bf33 use only 1 lifted solver instance 2012-11-16 16:50:19 +00:00
Tiago Gomes
c2791748d2 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-11-16 00:57:41 +00:00
Vitor Santos Costa
114a6732f0 add_factor should succeed if Constraints are satisfied 2012-11-15 17:28:57 +00:00
Tiago Gomes
51fd48cd46 Ouchgit statusgit status! forgot to add these to index 2012-11-14 23:17:39 +00:00
Tiago Gomes
4522850cd6 one step close to use one solver instatiation to solve several queries 2012-11-14 23:13:46 +00:00
Tiago Gomes
b673dfd462 fix type in an example 2012-11-14 23:12:03 +00:00
Tiago Gomes
64a27847cc Introduce a lifted solver class 2012-11-14 21:55:51 +00:00
Tiago Gomes
6e7d0d1d0a remove old TODOs 2012-11-14 21:17:04 +00:00
Tiago Gomes
cad22da9f5 fixes & cleanups 2012-11-14 21:05:55 +00:00
Tiago Gomes
d9e48e6290 log domain calculations fixes for lifted knowledge compilation 2012-11-14 18:40:03 +00:00
Vitor Santos Costa
416b407faa fixes i r..eal 2012-11-14 16:00:35 +00:00
Tiago Gomes
9202e286f8 IncExc: check if log vars are count normalized 2012-11-14 14:43:56 +00:00
Tiago Gomes
f5c85ffcc9 shatter agains the query in lifted knowledge compilation 2012-11-12 15:20:42 +00:00
Tiago Gomes
4776817603 move more code around 2012-11-10 00:18:20 +00:00
Tiago Gomes
07bcc89a76 factor out some lifted operations in a new class 2012-11-09 23:52:35 +00:00
Tiago Gomes
8ab622e0aa more work to support inference with lifted knowledge compilation 2012-11-09 18:42:21 +00:00
Tiago Gomes
c53220aa61 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-11-09 16:29:24 +00:00
Tiago Gomes
6a200760ca initial code to support calling a lifted knowledge compilation solver 2012-11-08 21:54:47 +00:00
Tiago Gomes
0ed89d3eeb add flag to lifted knowledge compilation and s/fove/lve 2012-11-08 15:05:48 +00:00
Tiago Gomes
a8c4f4fc52 fix one more TODO 2012-11-08 14:02:18 +00:00
Tiago Gomes
f7db522c6c InxExc: improve the code 2012-11-07 23:45:43 +00:00
Tiago Gomes
6db4d37684 Independence: consider also counted log vars 2012-11-07 21:21:42 +00:00
Tiago Gomes
d2ae171bb5 Improve Clause constructor 2012-11-07 18:43:13 +00:00
Tiago Gomes
278f8f77f5 Improve independence 2012-11-07 18:42:11 +00:00
Tiago Gomes
07c6509a79 cleanups, refactorings & renamings 2012-11-07 15:28:33 +00:00
Tiago Gomes
83c1e58674 clean ups 2012-11-07 12:37:22 +00:00
Tiago Gomes
b599b45bc6 AC: only allow one counting node per branch 2012-11-06 23:56:52 +00:00
Tiago Gomes
829f2248ee use utility method 2012-11-06 23:39:18 +00:00
Tiago Gomes
06a59ad659 IPG: verify that the root log vars appear in the same positions 2012-11-06 23:35:14 +00:00
Tiago Gomes
1e38743462 fix ipgCandidates 2012-11-06 16:24:59 +00:00
Tiago Gomes
869d513c1a remove and add some TODOs 2012-11-06 15:57:54 +00:00
Tiago Gomes
5e1547ba78 add missing method to TinySet 2012-11-06 15:15:55 +00:00
Tiago Gomes
ab334f82b2 fix weighted model counting in atom counting nodes 2012-11-06 14:16:04 +00:00
Vítor Santos Costa
06b915d568 more functionality 2012-11-05 13:49:15 +00:00
Tiago Gomes
4518a3db5d support smoothing on atom counting nodes (beta) 2012-11-04 18:02:40 +00:00
Vítor Santos Costa
eb63f30ab2 update version 2012-11-03 13:58:20 +00:00
Vítor Santos Costa
bf956ca639 python interface as a separate package 2012-11-02 22:37:27 +00:00
Tiago Gomes
b8cef8798a fix warning produced by new version of gcc 2012-11-01 22:54:14 +00:00
Tiago Gomes
a1d0deb638 support model counting on atom couting nodes - still untested 2012-11-01 22:34:28 +00:00
Tiago Gomes
d4912ea219 some reorders 2012-11-01 13:56:12 +00:00
Vitor Santos Costa
afc0c4c5a2 new version 2012-11-01 08:31:58 +00:00
Tiago Gomes
bfa9648067 clean up 2012-10-31 23:58:07 +00:00
Tiago Gomes
6877be897e first stab for atom counting 2012-10-31 23:43:39 +00:00
Tiago Gomes
e762d6be22 tweak colors 2012-10-30 16:00:20 +00:00
Tiago Gomes
77ef7b87cd support smoothing in inclusion-exclusion nodes 2012-10-30 15:48:19 +00:00
Tiago Gomes
b31a047635 refactor exportToGraphViz 2012-10-30 14:31:52 +00:00
Tiago Gomes
a75799b34f small improvements 2012-10-30 12:41:00 +00:00
Tiago Gomes
864f764391 support model counting in inc-exc nodes 2012-10-30 01:51:10 +00:00
Tiago Gomes
8b77b93a3b add support for inclusion-exclusion 2012-10-30 00:21:10 +00:00
Tiago Gomes
b6df8a66b1 add assignement operator to ConstraintTree 2012-10-30 00:15:40 +00:00
Tiago Gomes
d07ea73050 add projectedCopy 2012-10-29 21:37:58 +00:00
Tiago Gomes
324ea1a96c make independent partial ground suck less 2012-10-29 20:49:21 +00:00
Tiago Gomes
c2b1434969 show weights in dot file and add support for smoothing set-and nodes 2012-10-29 15:39:56 +00:00
Tiago Gomes
fbc44ba17d improments in exportToGraphViz 2012-10-29 13:49:11 +00:00
Vitor Santos Costa
eb79049bdb more improvements to interface 2012-10-28 18:22:09 +00:00
Tiago Gomes
d074ca9a8f add initial independent partial grounding support 2012-10-27 00:13:11 +01:00
Vitor Santos Costa
f33fe61ada more support. 2012-10-26 00:24:07 +01:00
Tiago Gomes
68ef63207f initial support for weighted model countign 2012-10-25 12:22:52 +01:00
Vítor Santos Costa
ea3f2f13e9 improve python interface 2012-10-25 00:33:02 +01:00
Tiago Gomes
eac6b954a8 add inital smoothing of the circuit 2012-10-24 21:22:49 +01:00
Tiago Gomes
0cfc64d068 update TODO 2012-10-24 16:24:49 +01:00
Vítor Santos Costa
d2da55463f more python fixes. 2012-10-23 10:18:24 +01:00
Vítor Santos Costa
0caac30c11 support lists 2012-10-23 10:16:32 +01:00
Vitor Santos Costa
84a5f518bf fix Makefile trouble 2012-10-23 09:06:38 +01:00
Vítor Santos Costa
b272205707 odbc and archive 2012-10-23 00:45:13 +01:00
Tiago Gomes
a8926fe38b inital code for lifted knowledge compilation 2012-10-22 23:01:13 +01:00
Vitor Santos Costa
f189784510 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-10-22 22:04:38 +01:00
Vítor Santos Costa
6bfd5bbe54 new version. 2012-10-22 21:39:45 +01:00
Vitor Santos Costa
32a01a5bf6 :new SWI modules. 2012-10-22 18:16:52 +01:00
Vitor Santos Costa
2de3917e4a socket testing 2012-10-17 17:30:51 +01:00
Vítor Santos Costa
fb2a17addf improve interface 2012-10-17 10:56:44 +01:00
Vítor Santos Costa
d6b3fc4325 new version. 2012-10-09 20:10:02 +01:00
Vitor Santos Costa
965b48f017 inew version. 2012-10-09 17:29:15 +01:00
Vitor Santos Costa
7c178d2644 newer version 2012-10-09 16:31:09 +01:00
Vítor Santos Costa
ecf5ac655f fun with python 2012-10-08 23:58:22 +01:00
Vitor Santos Costa
c4da6a9c68 update to newer version 2012-10-08 18:27:05 +01:00
Vítor Santos Costa
b24922fd38 fix bdd with em 2012-10-04 00:15:18 +01:00
Vitor Santos Costa
4e43aff605 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-10-03 17:17:24 +01:00
Vitor Santos Costa
93f13c9c8d Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-10-03 17:15:49 +01:00
Vítor Santos Costa
ab14365a30 try to make bdds work with EM. 2012-10-03 10:23:27 +01:00
Vitor Santos Costa
01e1a14160 improve indirect evidence handling in PFL queries (obs from Andrea) 2012-10-03 09:50:50 +01:00
Vítor Santos Costa
e6fb32d9ca fix problem with conditional_probability/3 and evidence (obs from Andrea Sterbini). 2012-10-02 14:26:42 +01:00
Vítor Santos Costa
85e9da1332 hve with em works now. 2012-10-02 08:49:16 +01:00
Tiago Gomes
559b3e3b54 watch out for division by 0 in message calculation for BP 2012-09-30 22:04:44 +01:00
Vítor Santos Costa
793907f710 more EM stuff 2012-09-29 11:50:00 +01:00
Tiago Gomes
fec0bd44b4 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-09-28 22:42:08 +01:00
Vítor Santos Costa
76088ca8b3 support binaries. 2012-09-26 23:10:22 +01:00
Vítor Santos Costa
74fd98832a upgrade compilation flags. 2012-09-26 22:59:22 +01:00
Vitor Santos Costa
7424a7376c fix reverse linking with yap from target library. 2012-09-26 14:49:21 +01:00
Vítor Santos Costa
83c5c7e7af more PFL support. 2012-09-26 00:04:58 +01:00
Tiago Gomes
265766277f Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-09-24 22:23:48 +01:00
Vítor Santos Costa
83418f8f27 bdd and pfl integration work (partial patch). 2012-09-24 14:36:30 +01:00
Vítor Santos Costa
ac863833ff PFL machinery 2012-09-23 13:25:15 +01:00
Vítor Santos Costa
309dfaa813 aggregates in PFL: exa,ple 2012-09-23 13:24:49 +01:00
Vítor Santos Costa
34dc03d43b new version of ve 2012-09-23 13:23:53 +01:00
Vítor Santos Costa
2603f18a10 support factors 2012-09-23 13:23:37 +01:00
Vítor Santos Costa
d73b2ac673 convert keys to numbers. 2012-09-23 13:23:05 +01:00
Vítor Santos Costa
709843717f latest swi repo 2012-09-21 13:11:46 +01:00
Vítor Santos Costa
2673c56982 new version. 2012-09-21 13:08:25 +01:00
Vítor Santos Costa
a3435f5a7b SWI compatibility additions 2012-09-21 13:07:10 +01:00
Vítor Santos Costa
ceb5785120 new commits. 2012-09-18 23:13:07 +01:00
Tiago Gomes
10b15f606a fix counting bp calculation of joint distribution 2012-09-18 17:24:22 +01:00
Tiago Gomes
701911ef09 forgot this 2012-09-11 18:48:54 +01:00
Tiago Gomes
febb17d753 fix factor joint 2012-09-11 18:48:16 +01:00
Tiago Gomes
86b57e961e fix memory leak 2012-09-11 18:40:41 +01:00
Costa Vitor
f4e965c02f more small fixes. 2012-08-29 16:36:46 -05:00
Costa Vitor
62ab5b3dcb new ve 2012-08-28 20:21:14 -05:00
Vítor Santos Costa
05d3266671 fix lib64 issues 2012-08-22 10:07:33 -05:00
Costa Vitor
a76f4f34d5 make EM work with PFL and BP. 2012-08-15 16:01:45 -05:00
Vítor Santos Costa
7e8cac9fb1 a step forward. 2012-08-13 09:23:36 -05:00
Costa Vitor
4756948967 fix processing of pfl ground networks. 2012-08-08 22:16:37 -05:00
Costa Vitor
652073caa4 Merge branch 'master' of git://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-08-08 11:17:50 -05:00
Vitor Santos Costa
ad609e39da Merge branch 'master' of git.dcc.fc.up.pt:yap-6.3 2012-08-08 04:00:06 +01:00
Vitor Santos Costa
d5ed379068 recognise weird trie. 2012-08-08 03:59:37 +01:00
Vitor Santos Costa
15bcaf97fc speedup. 2012-08-08 03:59:06 +01:00
Vítor Santos Costa
2b2cedc2b6 remove some comments and improve em interface. 2012-08-07 21:53:10 -05:00
Vítor Santos Costa
c159894c29 Merge branch 'master' of ssh://git.dcc.fc.up.pt/yap-6.3 2012-08-07 18:37:02 -05:00
Costa Vitor
98f68edd34 PFL files should have the PFL suffiv 2012-08-07 18:35:44 -05:00
Costa Vitor
e2fa3a3b8a fix call to ground solvers, both using clpbn style and horus style. 2012-08-07 18:33:51 -05:00
Vítor Santos Costa
a4ae6acbb6 check for Rinterface.h 2012-08-02 19:53:43 -05:00
Vitor Santos Costa
7458d8ee74 update to newer releases. 2012-08-01 19:48:29 +01:00
Costa Vitor
8ba1de7250 fixes for external CUDD compatibility. 2012-07-16 11:58:21 -05:00
Vitor Santos Costa
d78a55ca83 fix cudd support. 2012-07-08 07:45:16 -05:00
Vítor Santos Costa
bc8c9a423a Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 
Conflicts:
	packages/jpl
 2012-07-07 09:54:27 -05:00
Vítor Santos Costa
1e1d49e112 allow installing examples by defult. 2012-07-07 09:43:07 -05:00
Vítor Santos Costa
d9decfe003 fix example path in meld. 2012-07-06 18:58:35 -05:00
Vítor Santos Costa
8a22258fdf use standard paths for installing examples. 2012-07-06 18:56:05 -05:00
Vitor Santos Costa
c67edd877a learning is debugging 2012-07-03 19:48:13 +01:00
Vitor Santos Costa
b4b1e68c35 Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-07-03 16:03:27 +01:00
Tiago Gomes
4af5a90b8b re-enable all elimination heuristics 2012-07-02 22:53:44 +01:00
Vitor Santos Costa
79b4c6cb25 new version. 2012-07-02 20:04:02 +01:00
Denys Duchier
97163fa150 place INLINE_ONLY at front of extern inline declarations AND definitions. gcc and clang then behave the same. 2012-06-30 20:42:14 +02:00
Tiago Gomes
7a3d39551b improve the way we compute hashs for counting bp 2012-06-30 19:25:29 +01:00
Vítor Santos Costa
70bde4d38f inline extern patch by Denys Duchier 2012-06-29 22:44:08 +01:00
Vítor Santos Costa
20b60649e5 new updates to jpl. 2012-06-29 22:42:08 +01:00
Vítor Santos Costa
e938c17748 fix clang compilation (Denys Duchier). 2012-06-29 22:24:12 +01:00
Tiago Gomes
5e2d9acc4f update comment 2012-06-26 19:44:27 +01:00
Vitor Santos Costa
fe2f99e49d update package version. 2012-06-22 19:00:45 +01:00
Vitor Santos Costa
87e0b67e76 start with pfl learning. 2012-06-22 19:00:12 +01:00
Vitor Santos Costa
5fe052a3ef Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-06-22 14:51:58 +01:00
Tiago Gomes
3e56cf5e42 update burglary-alarm 2012-06-19 21:19:02 +01:00
Tiago Gomes
25e87a5ddc whitespace fixes 2012-06-19 15:30:55 +01:00
Tiago Gomes
57edd6adb9 minor improvements 2012-06-19 15:29:09 +01:00
Tiago Gomes
ee5b8e693a re-activate bayes ball 2012-06-19 15:10:57 +01:00
Tiago Gomes
9a8464d0f0 some renamings 2012-06-19 14:32:12 +01:00
Tiago Gomes
942bc8041e update burglary-alarm 2012-06-18 23:10:18 +01:00
Tiago Gomes
63739c6e31 minor updates 2012-06-18 23:08:37 +01:00
Tiago Gomes
b16b0b6a3f add a README file 2012-06-18 21:38:40 +01:00
Tiago Gomes
b4d2e7af20 remove unecessary call 2012-06-18 14:40:44 +01:00
Tiago Gomes
05b3daf5bb trivial fix 2012-06-14 12:19:51 +01:00
Tiago Gomes
384c108e62 fix joint calculation with lifted bp 2012-06-14 11:57:00 +01:00
Tiago Gomes
0e83a75b60 improve calculation of joint dist in counting bp 2012-06-13 12:47:41 +01:00
Tiago Gomes
b43e3316b3 forgot destructor 2012-06-13 12:17:49 +01:00
Tiago Gomes
89725dffbb rename some enums 2012-06-12 21:27:17 +01:00
Tiago Gomes
af11dbb445 reorder entries in the Makefile and drop some objects not required to build hcli 2012-06-12 16:55:32 +01:00
Tiago Gomes
d4f63b3942 drop Solver suffix and rename some files and classes 2012-06-12 16:29:57 +01:00
Vitor Santos Costa
f6de18cb09 6.2 fix to load_foreign atom. 2012-06-11 22:11:30 +01:00
Tiago Gomes
919116763f add a run all tests script 2012-06-08 14:11:54 +01:00
Tiago Gomes
4cc869a164 update scripts 2012-06-08 14:11:11 +01:00
Tiago Gomes
f8e714dcc3 add social domain benchmark with evidence 2012-06-08 14:08:14 +01:00
Tiago Gomes
51c279d24c increase the cost of the grounding operator 2012-06-08 13:35:00 +01:00
Vitor Santos Costa
31b8cb6440 windows support. 2012-06-08 06:54:03 -05:00
Tiago Gomes
5785260644 fix warning 2012-06-06 15:04:28 +01:00
Tiago Gomes
568bb27a66 forgot this 2012-06-05 15:33:24 +01:00
Tiago Gomes
2cf6a2a33d add benchmark tests for lbp 2012-06-05 15:23:41 +01:00
Vitor Santos Costa
3669cb894f Merge branch 'master' of https://github.com/tacgomes/yap6.3 
Conflicts:
	packages/CLPBN/clpbn/horus.yap
 2012-06-04 16:29:56 +01:00
Tiago Gomes
eec4b1452b print all lifted bp flags 2012-06-01 19:31:07 +01:00
Tiago Gomes
8fa8fff9f1 minor improvements 2012-06-01 19:29:57 +01:00
Tiago Gomes
25ccfa2f54 only allow joint dists on cliques 2012-06-01 19:29:23 +01:00
Tiago Gomes
4708685ed4 fix bug in Factor::contains 2012-06-01 14:03:39 +01:00
Vitor Santos Costa
71a62307f4 CLP(BN) stuff. 2012-06-01 13:17:39 +01:00
Tiago Gomes
ecde9649a8 fix header guard 2012-06-01 12:35:44 +01:00
Tiago Gomes
b5369db214 use only solveQuery 2012-05-31 23:06:53 +01:00
Tiago Gomes
f91e543d9d workaround c++ bad design: don't allow creating a factor graph from some pointer 2012-05-31 22:42:38 +01:00
Tiago Gomes
3f0f41c8a9 cleanup 2012-05-31 21:24:40 +01:00
Tiago Gomes
e11ed1a226 forgot these two 2012-05-31 21:24:15 +01:00
Tiago Gomes
22d8876d33 add support to (real) lifted belief propagation 2012-05-31 21:12:46 +01:00
Tiago Gomes
22780c4559 handle empty vectors in TinySet 2012-05-31 14:57:53 +01:00
Tiago Gomes
7429a39b48 fix a bug on absorving lifted evidence 2012-05-31 14:09:50 +01:00
Tiago Gomes
c2297c3f70 add lbp flag 2012-05-31 12:45:09 +01:00
Tiago Gomes
d00eb05624 use bind2nd instead of bind1st 2012-05-31 12:19:13 +01:00
Tiago Gomes
6668ee6381 add initial skeleton for lifted bp 2012-05-30 19:23:41 +01:00
Tiago Gomes
8d14593c3e add an enum for lifted solvers and do some renamings 2012-05-30 17:17:39 +01:00
Tiago Gomes
ac38e9e6a6 minor improvement 2012-05-29 17:19:49 +01:00
Tiago Gomes
651051484b update TODO 2012-05-29 17:14:29 +01:00
Tiago Gomes
02395daed3 add a sequential elimination heuristic 2012-05-29 17:14:01 +01:00
Tiago Gomes
0315cd51a3 remove repeated elements in TinySet 2012-05-29 17:09:45 +01:00
Tiago Gomes
6feb746412 use STL to calculate L1 distance and max norm 2012-05-29 13:48:08 +01:00
Tiago Gomes
3ac854b2ff use more Util::sizeExpected 2012-05-28 21:27:52 +01:00
Tiago Gomes
54ae29ae02 replace Util::add and Util::multiply by Util::apply_n_times 2012-05-28 21:09:56 +01:00
Tiago Gomes
f489a59194 use std::accumulate to calc the msg size 2012-05-28 20:59:39 +01:00
Tiago Gomes
57e32267fe remove unecessary code 2012-05-28 19:47:20 +01:00
Tiago Gomes
62283f353c some renamings 2012-05-28 19:41:24 +01:00
Tiago Gomes
64b53e8180 minor improvements 2012-05-28 19:10:29 +01:00
Tiago Gomes
004e6c0c5f minor improvements 2012-05-28 18:26:15 +01:00
Tiago Gomes
0cee50496e fix compilation in older gcc 2012-05-28 17:57:45 +01:00
Tiago Gomes
d5c2e6833d use convenient function 2012-05-28 17:43:48 +01:00
Tiago Gomes
0ad8f5fb4a remove whitespace 2012-05-28 17:01:07 +01:00
Tiago Gomes
149f3dab26 fix a bug in exporting to uai format 2012-05-28 17:00:46 +01:00
Tiago Gomes
3ee176c65b fix header guard 2012-05-28 16:59:41 +01:00
Tiago Gomes
f3ca7b2dfc add elementsToString and move things around a bit 2012-05-28 16:57:45 +01:00
Tiago Gomes
1352a526c3 refactor the way we export to libDAI 2012-05-28 14:42:20 +01:00
Tiago Gomes
250d122fc8 prefix is better than postfix 2012-05-28 14:12:18 +01:00
Tiago Gomes
a9c369aac1 size_t invasion, part II 2012-05-28 14:01:05 +01:00
Tiago Gomes
4a02997484 be consistent: s/copy/backup 2012-05-28 12:34:39 +01:00
Tiago Gomes
3986012e56 rename CutIndexer to MapIndexer 2012-05-28 12:32:15 +01:00
Tiago Gomes
3290834dfe be consistent with other functions 2012-05-28 12:24:10 +01:00
Tiago Gomes
fb9bb5c8b5 remove unused method 2012-05-28 12:18:39 +01:00
Tiago Gomes
6034f7a264 refactor the function to reorder arguments 2012-05-28 12:17:47 +01:00
Tiago Gomes
1239832c21 refactor the way we calculate the product of two factors 2012-05-26 20:58:56 +01:00
Tiago Gomes
bc2da47804 add a new handy constructor to CutIndexer class 2012-05-26 20:56:41 +01:00
Tiago Gomes
918666d7f6 add a randomize function 2012-05-26 20:44:39 +01:00
Tiago Gomes
c1bd230e61 small improvement 2012-05-25 21:26:40 +01:00
Tiago Gomes
4b2ffee015 minor renaming 2012-05-25 21:22:48 +01:00
Tiago Gomes
2efca0c85a refactor indexer classes and receive te ranges as a constant reference 2012-05-25 21:16:08 +01:00
Tiago Gomes
5ff161b10f refactor functions for summing out 2012-05-25 20:15:05 +01:00
Tiago Gomes
df8a3c5fdc fix a recent bug in StatesIndexer.h 2012-05-25 14:36:52 +01:00
Tiago Gomes
a56bccf5e5 delete unused method 2012-05-24 23:39:38 +01:00
Tiago Gomes
18d4777d9a use PrvGroup 2012-05-24 23:38:44 +01:00
Tiago Gomes
af6601837c size_t invasion 2012-05-24 22:55:20 +01:00
Tiago Gomes
5124098b6c delete unused code 2012-05-24 16:21:41 +01:00
Tiago Gomes
acc5ab056a some refactorings 2012-05-24 16:14:13 +01:00
Tiago Gomes
444eaacc63 add operators to manipulate vectors of parameters 2012-05-24 14:55:30 +01:00
Tiago Gomes
6cb718942a some renamings 2012-05-23 21:23:03 +01:00
Tiago Gomes
d91e91b97e prefix calls to c++ functions with cpp_ 2012-05-23 20:34:57 +01:00
Tiago Gomes
2b896aecb4 add examples to the Makefile 2012-05-23 19:59:40 +01:00
Tiago Gomes
9f236dccdd rename bp.yap and fove.yap 2012-05-23 19:15:23 +01:00
Tiago Gomes
cf929b6f13 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-05-23 17:59:26 +01:00
Tiago Gomes
c04082dc2e move benchmarks one level up 2012-05-23 17:27:21 +01:00
Tiago Gomes
3890aafc1a update examples 2012-05-23 17:17:50 +01:00
Tiago Gomes
bdef49bb20 remove city old example 2012-05-23 15:57:00 +01:00
Tiago Gomes
efec94adff remove two unnecessary files 2012-05-23 15:55:39 +01:00
Tiago Gomes
584e363aa1 move graphical model examples 2012-05-23 15:48:03 +01:00
Tiago Gomes
5b38891c21 third try ... 2012-05-23 14:58:26 +01:00
Tiago Gomes
6c77afb3ae ok, second try 2012-05-23 14:56:01 +01:00
Tiago Gomes
a4d181eb97 update benchmarks 2012-05-23 12:40:34 +01:00
Tiago Gomes
7c3e4ed3ab improve log information 2012-05-23 12:26:14 +01:00
Vitor Santos Costa
9e3d16022a fix YAP_AttOfVar 
beautify get atts
 2012-05-21 17:24:40 +01:00
Tiago Gomes
16cb48fea4 decrease the time required to find an elimination order 2012-05-17 17:29:31 +01:00
Vítor Santos Costa
d68ef3f5a1 fix empty tries. 2012-05-17 09:56:49 +01:00
Tiago Gomes
cf9a7f1413 show the maximum memory used in the benchmarks 2012-05-16 12:31:58 +01:00
Tiago Gomes
5934d9efe9 update TODO 2012-05-16 00:44:59 +01:00
Tiago Gomes
23b180b6f0 merge TinySet and SortedVector classes 2012-05-16 00:41:01 +01:00
Tiago Gomes
354071c261 update scripts 2012-05-15 20:14:13 +01:00
Tiago Gomes
f7ba86d3ed kill Util::abort, s/vectorIndex/indexOf and s/isCarteesianProduct/isCartesianProduct 2012-05-15 19:41:14 +01:00
Tiago Gomes
db0d2c9772 refactor and increase the scope of parfactor multiplication 2012-05-15 19:05:39 +01:00
Tiago Gomes
f4bca3ceea factor overflow will not happen with bp 2012-05-15 19:02:40 +01:00
Tiago Gomes
7ec4887e77 refactor printing of a parfactor 2012-05-15 16:57:50 +01:00
Tiago Gomes
346b70145f improvements on shattering 2012-05-15 16:52:21 +01:00
Tiago Gomes
90e139f8f3 refactor ProbFormula comparation operator 2012-05-15 16:49:34 +01:00
Tiago Gomes
03f9df7dc3 fix a bug when checking of a set of log vars form a cartesian product 2012-05-15 16:46:21 +01:00
Tiago Gomes
1380adcfb5 support getting tuples of repeated log vars 2012-05-15 16:45:24 +01:00
Tiago Gomes
2061eefda2 add a way to copy a log var 2012-05-15 16:43:32 +01:00
Vitor Santos Costa
6c36a8ccd3 make it easier for outside packages to link with YAP innards. 2012-05-14 15:06:18 +01:00
Tiago Gomes
4ade4945a0 improve Util::abort 2012-05-07 17:52:47 +01:00
Tiago Gomes
aeb07d43a7 add two more utility functions 2012-05-07 17:48:15 +01:00
Tiago Gomes
9d5801ef7f ony summout a group of rand vars if they not appear in another position on the parfactor 2012-05-05 23:11:32 +01:00
Tiago Gomes
8e75ef3073 shatter parfactors also against themselves 2012-05-05 21:06:27 +01:00
Tiago Gomes
660e15e2ac update the overflow check in factors, still needs more work tbd 2012-05-04 14:28:07 +01:00
Tiago Gomes
0e01a51929 remove commented code and fix a warning 2012-05-04 14:10:00 +01:00
Tiago Gomes
35d0804f9a update TODO 2012-05-03 13:15:33 +01:00
Tiago Gomes
10ac7720f7 update smokers examples 2012-05-03 11:38:49 +01:00
Tiago Gomes
2bef3f6866 minor updates 2012-05-03 00:56:19 +01:00
Vítor Santos Costa
9b0b6ec649 fix stop_low_level_trace. 
P Moura request for (?).
 2012-05-02 10:09:26 +01:00
Tiago Gomes
92d8c7dcbe add more asserts 2012-04-30 17:49:07 +01:00
Tiago Gomes
ad50166bd0 fix bug in benchmarks script 2012-04-30 16:26:33 +01:00
Tiago Gomes
9971736a45 kill DEBUG constant, its not used any more 2012-04-30 14:50:14 +01:00
Tiago Gomes
7cf8c68e15 fix error message 2012-04-30 14:12:00 +01:00
Tiago Gomes
d6e11ca84d delete order vars flag 2012-04-30 13:02:53 +01:00
Tiago Gomes
fa8ff6d5b6 abort if the factor will become to bigger 2012-04-30 12:48:30 +01:00
Tiago Gomes
85fc4ae50a add missing files 2012-04-30 11:59:59 +01:00
Tiago Gomes
a90bfb7a86 update benchmarks 2012-04-30 11:24:04 +01:00
Tiago Gomes
2fa06da3c9 disable bayes ball for now 2012-04-30 11:20:02 +01:00
Tiago Gomes
185cbe9c73 update examples 2012-04-30 11:16:11 +01:00
Tiago Gomes
56475cacbc revamp debugging plataform 2012-04-29 20:07:09 +01:00
Tiago Gomes
d86e2c8386 don't raise counting log vars before multiplication 2012-04-28 01:10:04 +01:00
Tiago Gomes
1173b4c25b when expanding a counting formula, check if the expanded log vars are still counting log vars 2012-04-28 01:01:23 +01:00
Tiago Gomes
52f4aa0340 sort the parfactors by their parameters when printing 2012-04-27 19:10:22 +01:00
Vítor Santos Costa
067d6d3f4f fix problog experiment. 2012-04-27 16:30:02 +01:00
Vítor Santos Costa
5ee39c6f08 back to original version. 2012-04-27 16:20:40 +01:00
Vítor Santos Costa
6bb4db125d fix names. 2012-04-27 15:33:32 +01:00
Vítor Santos Costa
60184e230d new lbdd stuff. 2012-04-27 15:32:57 +01:00
Vítor Santos Costa
ceb0c1f5ac new support file. 2012-04-27 15:32:17 +01:00
Vítor Santos Costa
823066f9da use library for learning. 2012-04-27 15:30:39 +01:00
Vítor Santos Costa
fd4bf21ece fix file names. 2012-04-27 15:26:44 +01:00
Tiago Gomes
20fc2c8dd1 add debug information to variable elimination 2012-04-27 14:48:48 +01:00
Tiago Gomes
9e1a649262 raising the paramaters to some power should happen after summing out, not before 2012-04-27 14:47:30 +01:00
Tiago Gomes
7599ccd5a1 don't print the paramaters if they are more than 32 2012-04-27 01:19:28 +01:00
Tiago Gomes
af063dcda8 be more precise when calculating the cost of grounding a log var in a formula 2012-04-27 01:18:54 +01:00
Tiago Gomes
995a11be83 improvements in the way we align logical variables 2012-04-26 18:00:06 +01:00
Vítor Santos Costa
fd755f0b7e allow ProbLog to use lbdd. 2012-04-26 13:52:09 +01:00
Tiago Gomes
cc09e77707 remove unnecessary variable 2012-04-26 00:58:06 +01:00
Tiago Gomes
689244a0d8 improve cbp by supporting factors connected to a single var two or more times 2012-04-26 00:54:06 +01:00
Tiago Gomes
ad24a360ce Add a way to summout a dimension given a index instead of a variable id. 
This is required for counting belief propagation.
 2012-04-25 22:59:01 +01:00
Tiago Gomes
fc362fe123 reorder the parameters instead of reordering variables 2012-04-23 22:57:04 +01:00
Tiago Gomes
0ebd6d6e06 improve constructor of VarNode 2012-04-23 22:40:36 +01:00
Tiago Gomes
3397f694fe sort the variable ids when printing all posterioris 2012-04-23 22:12:04 +01:00
Vitor Santos Costa
f24bf2e2cd full school 2012-04-23 07:13:58 -05:00
Vitor Santos Costa
32a905bc8b ddnnf support 2012-04-23 07:13:25 -05:00
Vitor Santos Costa
040c1c7fa7 more ddnnf stuff 2012-04-23 07:13:01 -05:00
Tiago Gomes
d90fcd532b minor update 2012-04-21 17:21:54 +01:00
Tiago Gomes
8c689665a0 support setting flags in horus cli and fix a bug when ordering the variables 2012-04-21 17:14:19 +01:00
Vitor Santos Costa
22f702f8e4 ddnnfs. 2012-04-20 16:43:30 -05:00
Vitor Santos Costa
220f7e6efc support mtbdds. 2012-04-20 16:42:59 -05:00
Tiago Gomes
085ebe1e96 check for overflows when performing expansion 
case the factor size after expansion be bigger than an unsigned integer, abort the program
 2012-04-20 17:16:10 +01:00
Tiago Gomes
0ffa409a80 fix a bug when expanding potential 2012-04-20 14:50:14 +01:00
Vitor Santos Costa
178ad27db8 better understanding of ddnnf. 2012-04-20 07:07:19 -05:00
Tiago Gomes
09697b8461 heuristic to improve results with fove 2012-04-19 18:37:15 +01:00
Tiago Gomes
2b7da4bc23 refactor the way we calculate the grounding cost 2012-04-19 17:59:45 +01:00
Tiago Gomes
661ce08961 check if the factor is not zero when choosing the elimination order 2012-04-19 12:08:27 +01:00
Tiago Gomes
cd1e157019 sort the colors in the signature receveied from a factor (add std namespace) 2012-04-18 19:29:43 +01:00
Tiago Gomes
7c100c96bc sort the colors in the signature receveied from a factor 2012-04-18 19:29:11 +01:00
Tiago Gomes
862e90a36b fix bug in joining constraint trees 2012-04-18 18:14:15 +01:00
Tiago Gomes
61ee95d92a use logarithms to calculate the cost of each fove operator 2012-04-18 16:40:12 +01:00
Tiago Gomes
406276b62b add missing scripts 2012-04-18 13:53:34 +01:00
Tiago Gomes
a7f57bea99 several optimizations on ConstraintTree 2012-04-18 03:05:01 +01:00
Tiago Gomes
cd720497f8 update groups when shattering 2012-04-18 03:04:06 +01:00
Tiago Gomes
bb5d02dbc0 minor updates 2012-04-18 03:03:29 +01:00
Tiago Gomes
dacf6b4e57 update examples 2012-04-18 02:57:24 +01:00
Tiago Gomes
d22b5a97fd add missing scripts 2012-04-18 02:52:31 +01:00
Tiago Gomes
b7e9245f26 refactor and add more benchmarks scripts 2012-04-18 02:49:33 +01:00
Tiago Gomes
d8e757f9ab improvements in the way factorials are computed 2012-04-18 02:46:38 +01:00
Tiago Gomes
cd8714460e add a way of calculate factorials of large numbers 2012-04-17 20:24:40 +01:00
Tiago Gomes
f02d0fb798 add more api to sorted vector implementation 2012-04-17 19:02:56 +01:00
Vítor Santos Costa
40ce9feb76 bdd experiments 2012-04-16 23:47:36 +01:00
Tiago Gomes
5e88510a7d use convenience function 2012-04-16 21:48:13 +01:00
Tiago Gomes
6ab5a4668b change align of some functions 2012-04-16 21:47:06 +01:00
Tiago Gomes
dd0ae564ef adapt to changes in CFactorGraph 2012-04-16 21:45:52 +01:00
Tiago Gomes
779f4ea2ce fix debuging information and s/ds/range 2012-04-16 21:44:04 +01:00
Tiago Gomes
66353e67ec some refactorings 2012-04-16 21:42:14 +01:00
Tiago Gomes
0d5888e238 assign evidence to the pruned factor graph 2012-04-16 21:40:28 +01:00
Tiago Gomes
b27500e93f add nrVarNodes and nrFacNodes 2012-04-16 19:29:55 +01:00
Tiago Gomes
6f7d2af718 add another sorted vector implementation 2012-04-15 21:51:12 +01:00
Tiago Gomes
c32ad3de0a use a sorted vector to store the node childs 2012-04-15 21:44:27 +01:00
Tiago Gomes
5e7b660f44 use iterators instead off indices 2012-04-15 03:19:15 +01:00
Vítor Santos Costa
c385dc13a8 fix syntax 2012-04-15 00:02:37 +01:00
Tiago Gomes
62fedf014b workaround garbage collector error 2012-04-14 18:00:12 +01:00
Tiago Gomes
f1d2889eaa fix warning about uninitialized var 2012-04-14 17:59:04 +01:00
Tiago Gomes
401ad145a5 improve the way the factor graph is constructed from a set from factors 2012-04-14 17:57:24 +01:00
Tiago Gomes
f6e3bb4481 don't assert when suming numbers with negative infinity 2012-04-13 23:12:12 +01:00
Tiago Gomes
24a5fe9c23 add typedef 2012-04-13 15:56:37 +01:00
Tiago Gomes
05ef8610f4 fix warning 2012-04-13 15:47:41 +01:00
Tiago Gomes
00faccd940 implement a printSolverParameters in ground solvers 2012-04-13 15:22:24 +01:00
Tiago Gomes
f3be68a552 add a way to print bool vars 2012-04-13 15:21:11 +01:00
Tiago Gomes
15c8f3abc6 ops 2012-04-12 18:46:21 +01:00
Tiago Gomes
5348c4a989 comment debug information in some prolog files 2012-04-12 18:35:29 +01:00
Vítor Santos Costa
5a8cc421d2 small pfl fixes. 2012-04-12 18:11:29 +01:00
Vítor Santos Costa
c5f42cd7eb more pfl changes. 2012-04-12 17:24:39 +01:00
Vítor Santos Costa
8c2dd1f847 fix bad call for parameters. 2012-04-12 17:17:21 +01:00
Vítor Santos Costa
28ce2da3dc Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-04-12 17:07:19 +01:00
Tiago Gomes
9def6c2b15 tempary hack to fix cbp and clean in benchs.sh 2012-04-12 00:42:55 +01:00
Tiago Gomes
564958ef8d improvements on benchmarkings 2012-04-11 23:48:59 +01:00
Tiago Gomes
03013960d3 refactor the city benchmarks and introduce set_solver/1 2012-04-11 19:15:52 +01:00
Tiago Gomes
f2fbbf29d8 rework the examples and erase the city network in the old format 2012-04-11 15:36:50 +01:00
Tiago Gomes
8697fcd2b4 refactorings 2012-04-10 20:43:08 +01:00
Tiago Gomes
78e86a6330 refactor ground solver interface 2012-04-10 15:00:18 +01:00
Tiago Gomes
46e6a10625 convert city dataset to new format 2012-04-10 12:56:14 +01:00
Tiago Gomes
b52dc99914 refactorings 2012-04-10 12:53:52 +01:00
Tiago Gomes
aa1b2e40ea some renamings 2012-04-10 11:51:56 +01:00
Tiago Gomes
6986e8c0d7 Improvements 
Factor nodes now contain a factor object instead of a pointer. Refactor the way .fg and .uai formats are readed.
 2012-04-09 15:40:51 +01:00
Tiago Gomes
f1d52c0389 add missing files 2012-04-05 23:04:27 +01:00
Tiago Gomes
d1b25f0864 renamings and delete bn_bp stuff 2012-04-05 23:00:48 +01:00
Tiago Gomes
b28ee8fb3a drop bayesian network representation 2012-04-05 20:08:54 +01:00
Tiago Gomes
abb0410d07 drop suport for Pearl belief propagation 2012-04-05 19:34:37 +01:00
Tiago Gomes
0d23591058 Add support to markov networks 2012-04-05 18:38:56 +01:00
Vítor Santos Costa
bc2364c5dc small fixes 2012-04-04 08:29:20 +01:00
Tiago Gomes
6c3add2ebd first steps in adapting horus ground solvers to pfl 2012-04-03 19:53:27 +01:00
Vítor Santos Costa
2bdec8f725 more PFL fixes. 2012-04-03 17:12:58 +01:00
Vítor Santos Costa
14d142aa10 new example. 2012-04-03 16:23:26 +01:00
Vítor Santos Costa
65e0c3b2a2 more PFL changes. 2012-04-03 16:22:40 +01:00
Vítor Santos Costa
6ccd458ea5 Merge branch 'master' of https://github.com/tacgomes/yap6.3 
Conflicts:
	packages/CLPBN/clpbn/bp.yap
	packages/CLPBN/clpbn/fove.yap
	packages/CLPBN/clpbn/horus.yap
 2012-04-03 15:07:22 +01:00
Vítor Santos Costa
44cb6abcb6 PFL support. 2012-04-03 15:01:35 +01:00
Vítor Santos Costa
e130c26c6d improve bdd support. 2012-04-03 15:01:14 +01:00
Vítor Santos Costa
3d216cf9db iextend bdd support. 2012-04-03 15:00:22 +01:00
Tiago Gomes
911b241ad6 fix align of logical variables 2012-04-03 11:58:21 +01:00
Tiago Gomes
fd8980642b another test 2012-04-01 00:23:03 +01:00
tgomes
c6128c51e8 this is a test 2012-03-31 23:59:05 +01:00
Tiago Gomes
e9cc1a8be2 remove unnecessary files 2012-03-31 23:44:08 +01:00
Tiago Gomes
313f9a036a yay, my first commit 2012-03-31 23:27:37 +01:00
Vítor Santos Costa
3563dcbf03 control for very large bdds. 2012-03-30 09:50:18 +01:00
tgomes
24b466db4e new version. 2012-03-29 12:24:29 +01:00
Vítor Santos Costa
0a9076bf4a bdd 2012-03-28 10:59:26 +01:00
Vítor Santos Costa
9ff1399482 new versions of packages. 2012-03-27 14:59:22 +01:00
Vítor Santos Costa
295cf24f5c extend functionality. 2012-03-27 14:57:43 +01:00
Vítor Santos Costa
cd45c64dcc allow optimisation and preserve ordering. 2012-03-27 14:57:12 +01:00
Vítor Santos Costa
52e5fdb6aa fix typo and export extra 2012-03-25 21:42:49 +01:00
Vítor Santos Costa
7d6b2435e0 fix typo and export extra 2012-03-25 21:42:39 +01:00
Vítor Santos Costa
a38177207d use safer method 2012-03-25 21:41:03 +01:00
Vítor Santos Costa
b6d5b79789 force parent unification when binding two variables with same key 2012-03-25 21:40:29 +01:00
Vítor Santos Costa
7d6461a527 fix order. 2012-03-23 22:26:31 +00:00
Vítor Santos Costa
07335ce047 clp(bn) support 2012-03-22 23:24:09 +00:00
Vítor Santos Costa
6b1574757e fix dist usage. 2012-03-22 22:32:50 +00:00
Vítor Santos Costa
f5f13541c6 old new syntax 2012-03-22 22:23:20 +00:00
Vítor Santos Costa
4c1602b74b old syntax example. 2012-03-22 22:22:16 +00:00
Vítor Santos Costa
6ad2c9b3a9 experimental BDD interface package. 2012-03-22 21:36:44 +00:00
Vítor Santos Costa
a338b95d3f add more support for FOVE. 2012-03-22 19:10:15 +00:00
Vítor Santos Costa
7d4f83ca40 improve examples. 2012-03-22 19:09:31 +00:00
Vítor Santos Costa
172f59cee5 ifix interface to clp(bn) machinery. 2012-03-22 19:08:36 +00:00
Vitor Santos Costa
c85e76f20f new fove version. 2012-03-22 11:40:24 +00:00
Vitor Santos Costa
6191dd210b new version 2012-03-22 11:35:54 +00:00
Vitor Santos Costa
21d317b223 new version of bp 2012-03-22 11:33:24 +00:00
Vitor Santos Costa
6e36498cac new version. 2012-03-22 11:29:46 +00:00
Vítor Santos Costa
8ba0bee7ab updates to packages. 2012-02-17 11:31:55 +00:00
Vítor Santos Costa
48cbed8b20 update to latest release. 2012-02-14 18:58:12 +00:00
Vítor Santos Costa
8c556f21ba include XMLPL package. 2012-02-14 12:41:12 +00:00
Vitor Santos Costa
247aa54046 back to using YAP writer. 2012-02-13 23:07:31 +00:00
Vítor Santos Costa
fc4edc3ad1 update version. 2012-02-13 19:30:00 +00:00
Vítor Santos Costa
70b41fbdb7 iupdate packages. 2012-02-13 11:26:23 +00:00
Vítor Santos Costa
dd762fe664 new versions. 2012-02-13 10:35:05 +00:00
Vítor Santos Costa
32d953809e update packages. 2012-02-13 09:43:50 +00:00
Vítor Santos Costa
64319f622f better SWI support. 2012-02-13 09:41:22 +00:00
Vítor Santos Costa
ea18699602 JPL support patches. 2012-02-12 12:28:37 +00:00
Vítor Santos Costa
73b1a8d6f8 change R configuration. 2012-02-06 11:01:10 +00:00
Vítor Santos Costa
e6fb330f58 fix warnings. 2012-02-03 20:55:35 +00:00
Vítor Santos Costa
ab33cacf7b LAM MPI interface support. 2012-02-02 23:25:31 +00:00
Vítor Santos Costa
4e6cc28cd3 lam support. 2012-02-02 09:58:05 +00:00
Vítor Santos Costa
dddf5bce80 update 2012-02-01 21:01:24 +00:00
Vítor Santos Costa
c4ee7ee0c3 Merge branch 'master' of ssh://git.dcc.fc.up.pt/yap-6.3 
Conflicts:
	.gitmodules
	configure
	packages/real
 2012-02-01 20:57:42 +00:00
Vítor Santos Costa
4c6164034e real stuff. 2012-02-01 20:50:57 +00:00
Vítor Santos Costa
7a99e4f974 fix openmpi/lam detection under Linux/UBUNTU 
fix -I in R interface.
 2012-02-01 10:26:04 +00:00
Vítor Santos Costa
d106c08f8c :make sure we get rid of YapR 2012-02-01 08:58:20 +00:00
Vítor Santos Costa
7fc23ea139 update latest r..eal 2012-02-01 08:49:06 +00:00
Vítor Santos Costa
c6a8f68e67 update to recent real. 2012-01-31 15:15:07 +00:00
Vítor Santos Costa
e4bfd98830 use real package shared with swi. 2012-01-31 15:11:39 +00:00
Vítor Santos Costa
ed0d3f6cae Latest ProbLog 2012-01-11 14:44:59 +00:00
Vítor Santos Costa
2e2e2deb91 new version 2012-01-10 18:50:24 +00:00
Vítor Santos Costa
a25c97c295 fove initial skeleton.w 2012-01-10 17:01:06 +00:00
Vitor Santos Costa
3f97a3f24a new version 2012-01-09 23:31:30 +00:00
Vítor Santos Costa
bf12f320fe fix CPT handling in aggregates. 2011-12-27 22:08:21 +00:00
Vítor Santos Costa
8f3eabef1d support parfactors, first step. 2011-12-27 22:07:42 +00:00
Vítor Santos Costa
d01eec1dbe iupdate changes. 2011-12-22 11:43:30 +00:00
Vítor Santos Costa
7df0fd90f5 Changes by Tiago 2011-12-12 15:30:24 +00:00
Vítor Santos Costa
33bf0bc0f5 new release from Tiago 2011-12-12 15:29:51 +00:00
Vítor Santos Costa
03391e3feb New Version From Tiago 2011-12-10 23:12:10 +00:00
Vítor Santos Costa
dbcb6e530c New Version From Tiago 2011-12-10 22:58:43 +00:00
Vítor Santos Costa
1a4e31e7a0 fix MKINDEX call 2011-12-02 23:09:04 +00:00
Vítor Santos Costa
79d1bf5eec Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 
Conflicts:
	OPTYap/opt.config.h
	OPTYap/opt.structs.h
 2011-11-30 13:24:12 +00:00
Vítor Santos Costa
fec7019a79 fix some warnings 
improve thread support.
 2011-11-30 13:05:21 +00:00
Vítor Santos Costa
2f6ec5ff59 improve learning for CLP(BN). 2011-11-30 13:04:13 +00:00
Vítor Santos Costa
6c1cf7ea39 update to OSX support. 2011-11-18 22:24:46 +00:00
Vítor Santos Costa
e33712403f fix prism compilation and PRISM overflow handling. 2011-11-18 18:33:22 +00:00
Vítor Santos Costa
ae29efec0c iupdate version. 2011-11-18 16:26:41 +00:00
Vítor Santos Costa
0334632e6e improvements to YapR. 2011-11-17 12:58:22 +00:00
Vitor Santos Costa
fedf37ee35 update yapr 2011-11-15 12:59:00 +00:00
Vítor Santos Costa
946887d3b8 update ! 2011-11-15 12:46:03 +00:00
Vítor Santos Costa
df949efdb3 fix god knows what. 2011-11-15 12:40:55 +00:00
U-WIN7\Vitor
a2917e4e9e support R in WIN32. 2011-11-15 04:37:21 -08:00
Vítor Santos Costa
79bcde0869 fix variable that belongs to Makefile.in 2011-11-15 11:18:16 +00:00
Vítor Santos Costa
b7d9e63c17 ifix clib Makefile.in 2011-11-15 11:17:00 +00:00
Vitor Santos Costa
71bedb75f2 fix configuration script to better recognsie R. 2011-11-15 10:22:03 +00:00
Vítor Santos Costa
e865248dce prism logical probabilistic system. 2011-11-10 12:24:47 +00:00
Vítor Santos Costa
3dbae0cb94 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-11-04 02:48:28 +00:00
Vítor Santos Costa
0141113583 fix bug. 2011-11-03 07:53:21 +09:00
fabrizio
016cd42226 no copy of learning algorithms subdirectories 2011-10-31 14:26:18 +01:00
Fabrizio Riguzzi
be449b3aef updated cplint 2011-10-22 16:33:04 +02:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
d173af8d2d fix 2011-10-21 19:14:04 +01:00
Vitor Santos Costa
e56e1cbacb small fixes 2011-09-24 21:39:37 +01:00
Vitor Santos Costa
b2dcc47f9c fix evidence problems. 2011-09-24 21:38:59 +01:00
Vitor Santos Costa
dd9aa08eec fix aleph-params install 2011-09-24 21:37:50 +01:00
Vitor Santos Costa
ff84eaf782 delete_file changed in 6.3. 2011-09-20 14:50:24 +01:00
Vítor Santos Costa
5baf42320b recompute tables when commit. 2011-09-20 09:55:09 +01:00
Vítor Santos Costa
bfc1def1d5 imake sure mutable is available. 2011-09-20 09:54:30 +01:00
Vítor Santos Costa
4855c3460a improve memory usage when storing piointers to evidence facts. 2011-09-15 15:49:57 +01:00
Vítor Santos Costa
cdd33b8c1a new CPLint and ProbLog versions. 2011-09-15 15:49:06 +01:00
Vitor Santos Costa
04f0a4bb73 fix Makefile.in for minisat. 2011-09-06 21:18:30 +02:00
Vitor Santos Costa
01c80d77e0 update latest releaase of ProbLog 2011-09-05 03:07:15 +02:00
Vitor Santos Costa
86c1842cff upgrade to packages and to package docs. 2011-09-05 02:28:34 +02:00
Vitor Santos Costa
fda246f6fc upgradae packages. 2011-09-05 01:11:49 +02:00
Vitor Santos Costa
d38d54b67a small fix to Dialects. 2011-09-05 00:01:41 +02:00
Vitor Santos Costa
9cfd4d8d8b move package/PLStream to os 
modify Makefiles accordingly
define __unix__ on Unix like clones (OSX, AIX, etc).
 2011-09-04 19:42:33 +02:00
Vitor Santos Costa
89023264a3 update branch 2011-09-04 19:32:21 +02:00
Vitor Santos Costa
df45128c8a new version of clib 2011-09-04 19:31:49 +02:00
Vitor Santos Costa
284ac49217 fix wide atom writing. 2011-09-02 23:22:35 +01:00
Vitor Santos Costa
d21888abc9 adjust submodules 2011-08-31 14:11:01 -07:00
Vitor Santos Costa
e19133e362 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-08-22 15:46:52 -03:00
Vitor Santos Costa
6c284faf8b make sure we do a full reset after Scleanup. 2011-08-22 15:45:49 -03:00
Vitor Santos Costa
811606059e try encoding even if . is not in string 2011-08-22 15:45:16 -03:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
b6aca9463d Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-08-18 22:35:13 +01:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
5fa4da2e22 fix win directory access in YAP. 2011-08-18 22:33:49 +01:00
Vitor Santos Costa
2256c3bf8b add timezone flag 2011-08-16 13:31:19 +00:00
Vitor Santos Costa
23be6ccdfc fix wide atom handling. 2011-08-12 11:52:47 -03:00
Vitor Santos Costa
b9effea2e9 fix changes 2011-08-09 08:12:52 -03:00
Vitor Santos Costa
c871761c11 more qly stuff. 2011-08-03 08:23:00 +01:00
Vitor Santos Costa
545a3a2b03 writing hook for opaque terms. 2011-07-30 00:06:52 +01:00
Vitor Santos Costa
0e964c7278 include SWI patch. 2011-07-26 21:05:53 +01:00
Vitor Santos Costa
ffae487cf2 fix path support in WINDOWS. 2011-07-26 18:42:13 +01:00
Vitor Santos Costa
e145910234 windows path support. 2011-07-26 18:41:45 +01:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
5437984815 Merge branch 'master' of /cygdrive/z/vitor/Yap/yap-6.3 2011-07-26 17:07:10 +01:00
Vitor Santos Costa
69f1bedf47 copy error routines from SWI. That was easy. 2011-07-25 23:52:05 +01:00
Vitor Santos Costa
f73d7ef5f6 fixes for WIN32 compilation. 2011-07-25 23:51:45 +01:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
4fe1833ece Merge branch 'master' of /cygdrive/z/vitor/Yap/yap-6.3 2011-07-25 17:09:43 +01:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
840e287cda mode changes 2011-07-25 17:09:28 +01:00
Vitor Santos Costa
69e5fed10f new version of belief propagation solver. 2011-07-22 21:33:30 +01:00
Vitor Santos Costa
a16a7d5b1c fix calling of Write and Read for new SWI style interface. 2011-07-22 15:49:40 +01:00
Vitor Santos Costa
eea7f83e09 fix module stuff. 2011-07-22 14:50:32 +01:00
Vitor Santos Costa
08217b825b update swi packages. 2011-07-22 14:41:17 +01:00
Vitor Santos Costa
c78aa3cf1d fix user-c spying. 2011-07-22 14:10:55 +01:00
Vitor Santos Costa
e4a775925b fix handling of YAP_Blob terms. 2011-07-22 04:09:14 -07:00
Vitor Santos Costa
6fdf6b49f6 fix computation of cut register for either (yapor). 2011-07-21 14:39:57 +01:00
Vitor Santos Costa
de60807724 cleanup patch 2011-07-14 09:40:15 +01:00
Ricardo Rocha
22d8e33a5f fix cut support for or-parallelism 2011-07-13 17:36:26 +01:00
Vitor Santos Costa
45e5e3b983 work if ipackages are missing and some cleanups. 2011-07-13 15:31:22 +01:00
ubu32
2a51403518 fix restore of streams. 2011-07-11 21:15:15 -07:00
ubu32
f968a745e8 fix Scurin in mt 2011-07-11 07:06:20 -07:00
ubu32
2b213963dd use Scurin by default in read/1. 2011-07-10 04:50:55 -07:00
ubu32
04a6911b9f fix warnings. 2011-07-09 09:15:52 -07:00
ubu32
87b99f4d54 update pldoc. 2011-07-09 08:23:12 -07:00
Vitor Santos Costa
1130a3536d fix ProbLog error. 2011-07-04 22:36:57 +01:00
Vitor Santos Costa
9727f3c71c fix warning messages. 2011-07-04 22:36:34 +01:00
Vitor Santos Costa
21050891ee city example. 2011-07-02 09:49:12 +01:00
Vitor Santos Costa
be345a0387 update to recent ProbLog. 2011-06-26 23:13:43 +01:00
Vitor Santos Costa
249010bd90 add SWI compatible file_name_variables flag. 2011-06-21 22:33:10 +01:00
Vítor Santos Costa
53f76eb198 fix Makefile 2011-06-14 11:13:32 +01:00
Vítor Santos Costa
9549277295 fix Makefilew 2011-06-14 09:41:20 +01:00
Vítor Santos Costa
866d2130af disable make_index for now. 2011-06-14 09:39:19 +01:00
Vitor Santos Costa
b3a2f8efb2 new package (pldoc) and updates to several other packages. 2011-06-14 09:17:55 +01:00
Vitor Santos Costa
26c72dcfb1 include ww_browser 2011-06-13 01:57:15 +01:00
Vitor Santos Costa
f10e25b00d update packages. 2011-06-13 01:45:59 +01:00
Vitor Santos Costa
456adc6a4a pldoc seems to be working in YAP. 2011-06-13 01:45:29 +01:00
Vitor Santos Costa
9eabaa580c support for documentation in packages. 2011-06-12 22:26:04 +01:00
Vitor Santos Costa
f04a153e42 flag unavailable before gcc-4.2 2011-06-11 23:07:02 +01:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
48284cfb44 windows console fixes 2011-06-09 17:55:27 +01:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
a0748c7c10 windows interface. 2011-06-06 19:03:20 +01:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
d685b8891f fix compilation flag. 2011-06-06 12:29:28 +01:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
eb700c647d fix lost buffer 2011-06-06 12:29:13 +01:00
Vítor Santos Costa
b1a3b925ae handle variable destroyed by garbage collector. 2011-06-03 12:54:09 +01:00
Vítor Santos Costa
56d71e55b4 remove unecesary files. 2011-06-03 12:26:10 +01:00
Vitor Santos Costa
1962a0507f Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-06-01 14:39:43 +01:00
Vitor Santos Costa
e9171547b9 implementation of bayes ball. 2011-05-27 21:34:55 +01:00
Vítor Santos Costa
791106aa05 these two now include SWI-Stream in Yap.h, so they need PL_KERNEL defined before Yap.h. 2011-05-27 11:49:42 +01:00
Joao
f658a99dad fix C/scanner.c. change some misc/LOCALS initializations. 2011-05-26 15:02:00 +01:00
Joao
98e35b16e8 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-05-25 16:41:39 +01:00
Joao
971ad94311 moved several global variables to misc/GLOBALS 2011-05-25 16:40:36 +01:00
Vítor Santos Costa
14bdc262df export TermToStream 2011-05-25 13:10:39 +01:00
Vitor Santos Costa
b3bd547f55 vel -> ve 2011-05-21 00:27:25 +01:00
Vitor Santos Costa
27dbe24b9e just link if variables have evidence, we can discard other unused variables. 2011-05-21 00:19:53 +01:00
Vitor Santos Costa
adcc2797e1 make sure query variables are accessible from top-level. 2011-05-21 00:15:20 +01:00
Vitor Santos Costa
55e2e6fe3a small fixes 2011-05-20 23:56:12 +01:00
Vitor Santos Costa
6d4d2b5830 fix Makefile for bp 2011-05-19 09:23:32 +01:00
Vitor Santos Costa
b7379a67cc Update CLP(BN) with Tiago's latest version of BP solver. 2011-05-17 12:00:33 +01:00
Joao
bce888bd6d Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-05-11 18:24:25 +01:00
Joao
ab63cd190b LOCALS and GLOBALS are now generated by misc/buildlocalglobal. 2011-05-11 18:22:58 +01:00
Vitor Santos Costa
7122c657c0 more updates to meld. 2011-05-11 09:28:40 +01:00
Vítor Santos Costa
bbf83cb34d extra live should not be needed ... 2011-05-09 22:03:35 +01:00
Ricardo Rocha
a532b6cff3 struct local_optyap_data is now part of struct worker_local (generated from the file LOCALS) 2011-05-09 19:36:51 +01:00
Vitor Santos Costa
72a83eec62 small fixes. 2011-05-08 23:49:06 +01:00
Vitor Santos Costa
925b8fec01 Merge branch 'master' of ssh://yap.git.sf.net/gitroot/yap/yap-6.3 2011-05-08 23:12:44 +01:00
Vitor Santos Costa
77407bc14e improve meld emulation to compile pagerank example. 2011-05-08 23:10:52 +01:00
Joao
d9cee607e9 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 
Conflicts:
	C/cdmgr.c
 2011-05-04 11:10:20 +01:00
Joao
dc3c54c164 change LOCALS macros. 2011-05-04 10:11:41 +01:00
Vitor Santos Costa
bf6033082d Merge branch 'master' of ssh://yap.git.sf.net/gitroot/yap/yap-6.3 2011-05-02 23:31:35 +01:00
Vitor Santos Costa
85c91d72b6 fix example path 2011-05-02 23:28:37 +01:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
772cf833a6 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-05-02 18:23:50 +01:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
a787605c5c fix compilation in win32win64 2011-05-02 18:22:07 +01:00
Vítor Santos Costa
81093f7edd HMM example. 2011-05-01 22:58:35 +01:00
Vítor Santos Costa
63d8536711 move examples upwards. 2011-05-01 22:49:34 +01:00
Vítor Santos Costa
697f7c650c I/O fixes. 2011-04-22 15:29:41 +01:00
Vítor Santos Costa
5488a9bccf for now go back to old tabling trailing 
update YapR
 2011-04-15 10:48:24 +01:00
Vítor Santos Costa
b11a3f894c make sure to initialise both fields in trail entry (helpful for valgrind). 2011-04-13 14:49:03 +01:00
Vítor Santos Costa
49582bf49c recent changes to YapR. 2011-04-04 16:25:14 +01:00
Vítor Santos Costa
e49e59c705 include optimise flag. 2011-04-04 16:23:46 +01:00
Vítor Santos Costa
4ed9df43ac remove Yap_InitPlIO (unused). 2011-04-04 13:55:39 +01:00
Vitor Santos Costa
417fb5c52c includ e6.2 changes for globals. 2011-04-04 13:20:35 +01:00
Vitor Santos Costa
598452c069 fix reinitialization of streams at Restore. 2011-03-28 22:55:28 +01:00
Vitor Santos Costa
889e146f0d update packages 
fix tai loading bug (now compile tai libraries in binary).
 2011-03-27 13:14:42 +01:00
Vitor Santos Costa
9c3d6a187d debugging cleanups 
actually use readline flag.
 2011-03-26 15:45:42 +00:00
Vitor Santos Costa
89d605d6c0 Merge branch 'master' of ssh://yap.git.sf.net/gitroot/yap/yap-6.3 
Conflicts:
	packages/PLStream/pl-file.c
	packages/http
	packages/plunit
	pl/flags.yap
 2011-03-26 15:27:03 +00:00
Vitor Santos Costa
48cd3bd675 use SWI flags. 2011-03-26 15:18:56 +00:00
Vítor Santos Costa
e03acef3f9 use SWI flags. 2011-03-26 15:17:17 +00:00
Vítor Santos Costa
0d9adb7dbc iprogress in submodules. 2011-03-25 23:17:06 +00:00
Vitor Santos Costa
0bd0936683 fix pl-read.c 2011-03-24 22:23:26 +00:00
Vitor Santos Costa
636d66d7ad Merge branch 'master' of ssh://yap.git.sf.net/gitroot/yap/yap-6.3 2011-03-24 21:30:41 +00:00
Vitor Santos Costa
f3debd2f49 fix modules.y 2011-03-24 21:26:01 +00:00
Vítor Santos Costa
9aa4adb0dc update YapR. 2011-03-24 14:07:58 +00:00
Vítor Santos Costa
44f6ce1000 first cut at support for J Azevedo and Rui Camacho's YapR. 2011-03-23 09:46:27 +00:00
Vítor Santos Costa
a8bf2907d5 iupdate dtoa and new versions of packages. 2011-03-22 11:42:05 +00:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
b9b107eaa9 recent versions of packages. 2011-03-22 09:32:59 +00:00
unknown
185151db2a support MINGW 2011-03-21 23:39:25 +00:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
7670ce631b WIN32 patches 2011-03-21 17:07:58 +00:00
Vitor Santos Costa
97f46d5aa9 R support 2011-03-19 15:30:54 +00:00
Vitor Santos Costa
ca952a4eac include R package. 2011-03-19 15:29:06 +00:00
Vitor Santos Costa
97c76adbf4 fix RUNTEX 2011-03-19 15:28:45 +00:00
Vítor Santos Costa
36a0023fbf iimprove SWI compat 2011-03-15 23:49:28 +00:00
Vítor Santos Costa
8421af32e8 support datarootdir 2011-03-15 18:22:05 +00:00
Vítor Santos Costa
d96f9c3fe1 ZLIB support 2011-03-15 18:16:05 +00:00
Vítor Santos Costa
5b27d9fb72 fix submodule 2011-03-15 17:02:56 +00:00
Vítor Santos Costa
73b8478bdb iinclude all modules. 2011-03-15 16:41:33 +00:00
Vítor Santos Costa
123cf5af84 use external module for clib 2011-03-15 16:26:44 +00:00
Vítor Santos Costa
6b5046bb8c use external modules. 2011-03-15 16:22:56 +00:00
Vítor Santos Costa
2a76f86785 don't lock ThreadLocal predicates. 2011-03-15 09:08:09 +00:00
Vítor Santos Costa
656e95f068 fix low level emulation. 2011-03-14 21:03:28 +00:00
Vítor Santos Costa
2d2f5f8702 remove debugging message. 2011-03-14 21:03:13 +00:00
Vítor Santos Costa
0d6be2d858 improve string support 
fix non-thread compilation.
 2011-03-11 23:21:23 +00:00
Vítor Santos Costa
d42db0dc5c ithread_pool (untested). 2011-03-11 21:31:10 +00:00
Vítor Santos Costa
cb192cf26a add get_time. 2011-03-11 20:36:40 +00:00
Vítor Santos Costa
e05b84ce4e fix to thread support. 2011-03-11 19:49:32 +00:00
Vítor Santos Costa
3c5eb3ff7d use SWI version of CLIB 2011-03-10 11:05:53 +00:00
Vítor Santos Costa
4b8a9a4f4e make http an external module. 2011-03-09 23:38:58 +00:00
Vítor Santos Costa
f92f8daa6d fix debugging message. 2011-03-09 22:39:11 +00:00
Vitor Santos Costa
4ad0407388 fix small differences 2011-03-09 13:33:30 +00:00
Vitor Santos Costa
5418f55d74 fix pl-tai 2011-03-09 13:05:03 +00:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
752fa4fc53 support windows compilation, upgrade to current uxnt. 2011-03-09 00:02:21 +00:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
a3f79cede9 WINDOWS compatibility 2011-03-08 00:03:50 +00:00
ubu32
e98ba46ccb make new code work in 32 bit Linux. 2011-03-07 08:34:20 -08:00
Vítor Santos Costa
90d93fdbdd cache abstra machine register in threaded mode. 2011-03-07 16:02:55 +00:00
Vítor Santos Costa
9c3041f1e3 support copying registers in SWI code. 2011-03-03 11:41:21 +00:00
Vítor Santos Costa
da1df3d851 more cleanups. 2011-03-02 23:19:39 +00:00
Vítor Santos Costa
cd287280b3 fix warnings 2011-03-02 09:20:05 +00:00
Vítor Santos Costa
824b5ff88e support critical sections, now that we have Yap.h 2011-03-02 09:19:35 +00:00
Vítor Santos Costa
7f3e510992 get rid of aliasing warnings. 2011-03-02 09:18:51 +00:00
Vítor Santos Costa
d42f4daed0 get rid of unused functions. 2011-03-02 09:18:14 +00:00
Vítor Santos Costa
282760de9c fix an alias warning by replacing cast by an union. 2011-03-02 09:15:30 +00:00
Vítor Santos Costa
b868d85ac8 make rl not deadlock under SIGINT 2011-03-01 12:31:19 +00:00
Vítor Santos Costa
0e447436b3 fix missing lock in OpInfo 2011-03-01 10:32:25 +00:00
Vítor Santos Costa
cce6bb6354 LD should be local to threads. 
get rid of write_depth on YAP side.
 2011-03-01 10:26:25 +00:00
Vítor Santos Costa
31909e3741 fix makefile rules. 
fix dtoa for 64 bit machines
 2011-03-01 09:18:19 +00:00
ubu32
3f6b92de4b enable compilation with multi-threading. 2011-02-27 15:06:10 -08:00
ubu32
f2e8f2ac2e more fixes for bignum support in PLStream. 2011-02-27 03:40:27 -08:00
ubu32
3c261305db interface to rationals. 2011-02-27 02:13:25 -08:00
ubu32
53e8811077 fixes to use SWI version of readline. 2011-02-26 18:34:44 -08:00
Vítor Santos Costa
fbdac55317 rm Makefile, we have Makefile.in 2011-02-25 12:05:51 +00:00
Vítor Santos Costa
11f4ac0e52 remove dump files. 2011-02-25 12:04:46 +00:00
Vítor Santos Costa
f92fa69eab more PLStream stuff. 2011-02-23 17:46:50 +00:00
Vítor Santos Costa
6ea0b727e0 delete executable. 2011-02-23 15:35:17 +00:00
Vítor Santos Costa
29e46cbab9 Experimental code for Tiago Gomes bp solver. 2011-02-23 15:31:56 +00:00
Vitor Santos Costa
4a5ba35937 assembly fixes 
more support for readline, including getting more stuff from read.
 2011-02-17 00:57:49 +00:00
Vitor Santos Costa
d4f11c9fda Merge branch 'master' of ssh://yap.git.sf.net/gitroot/yap/yap-6.3 2011-02-16 21:12:03 +00:00
Vitor Santos Costa
0614a8c26e readline fixes 2011-02-16 21:11:45 +00:00
ubu32
3736a14d9b small fixes 2011-02-15 16:41:32 -08:00
Vitor Santos Costa
dce619f804 compile readline. 2011-02-16 00:23:58 +00:00
Vitor Santos Costa
ef918d8fe4 try compiling pl-rl 2011-02-15 23:45:47 +00:00
Vitor Santos Costa
842f80e928 encoding support. 2011-02-15 22:44:06 +00:00
Vítor Santos Costa
49f980a7a7 small fixes 2011-02-15 19:24:15 +00:00
Vítor Santos Costa
e90a1ce024 avoid repeated fetch 2011-02-15 18:40:18 +00:00
Vítor Santos Costa
ce0874d6be improve code to avoid warning. 2011-02-15 18:39:50 +00:00
Vítor Santos Costa
7b8a25d961 iYAP allows variables to be written as $VAR(-1) -> _ 2011-02-15 18:24:35 +00:00
ubu32
57f5ef8cfc more bug fixes: 
- make readline use packages, not old YAP code
- fix ! over backtrack cps
- fix write list
 2011-02-15 05:54:19 -08:00
ubu32
4dbdaaa772 eplace format 2011-02-14 14:13:45 -08:00
ubu32
f6befe5796 alias stuff. 2011-02-14 06:59:15 -08:00
ubu32
09f4810b76 __APPLE__ is __unix__:w 2011-02-14 06:51:28 -08:00
ubu32
17da004a5f make sure we initialize the OS bits. 2011-02-14 06:49:48 -08:00
Vitor Santos Costa
80f190bc8a use SWI user_*. 2011-02-13 01:03:08 +00:00
Vitor Santos Costa
2d07a7730e remove YAP memory (string) streams. 2011-02-12 18:42:44 +00:00
Vitor Santos Costa
a41627ef1d return time as an int64, not as a float. 2011-02-12 00:45:00 +00:00
Vitor Santos Costa
712300027e include support for working_directory/2 as a system predicate. 2011-02-12 00:26:28 +00:00
Vitor Santos Costa
2451a052cb use text routines from current SWI fli. 2011-02-12 00:17:59 +00:00
Vítor Santos Costa
45032cc61e export current predicate for SWI built-ins. 2011-02-11 19:01:18 +00:00
Vitor Santos Costa
07b17f473a improve non empty files. 2011-02-11 14:17:06 +00:00
Vítor Santos Costa
b475be5692 more SWI compatibility changes. 2011-02-11 01:22:07 +00:00
Vítor Santos Costa
02c791fc3d iminor PLStream fixes. 2011-02-10 21:45:43 +00:00
Vitor Santos Costa
3fe9b923cb more fixes to SWI emulation 
integrate in main binary
 2011-02-10 21:14:38 +00:00
Vitor Santos Costa
841f6eb1e5 YAP updates. 2011-02-10 00:02:05 +00:00
Vitor Santos Costa
232a740d43 upgrade to latest SWI 2011-02-10 00:01:19 +00:00
Vitor Santos Costa
8e8c361671 zlib is now submodule. 2011-02-09 13:11:15 +00:00
Vitor Santos Costa
b00ed6508e move to new sharing structure 2011-02-09 13:10:20 +00:00
Vítor Santos Costa
0ad02c3ee1 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-02-08 21:06:02 +00:00
Vítor Santos Costa
54507703fe Merge branch 'master' of ../yap-6.2 2011-02-08 21:05:12 +00:00
Theofrastos Mantadelis
89789e8232 corrected an import bug 2011-02-08 15:57:23 +01:00
Vitor Santos Costa
9bdc7ca96e get rid of references to freed code. 2011-02-04 01:23:01 +00:00
Vitor Santos Costa
c1721df472 Merge branch 'master' of /yap-6.3 
Conflicts:
	C/c_interface.c
 2011-02-03 11:33:50 +00:00
Vitor Santos Costa
48b891a5b2 Merge branch 'master' of ../yap-6.2 2011-02-03 11:27:01 +00:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
a4a1feeacc improve SWI emulation in WIN32. 2011-02-03 11:23:12 +00:00
Vítor Santos Costa
ea5b0a29b2 Merge branch 'master' of ../yap-6.2 2011-02-02 19:38:32 +00:00
Vítor Santos Costa
cbf6caddbd fix support for comparing weird terms. 2011-02-02 19:37:11 +00:00
Vítor Santos Costa
f840ee307d Merge branch 'master' of ../yap-6.2 2011-02-02 16:15:50 +00:00
Vitor Santos Costa
67ec597966 Merge ../yap-6.2 2011-01-21 08:16:41 -06:00
Theofrastos Mantadelis
457052f661 Corrected a minor ProbLog bug 2011-01-17 12:02:05 +01:00
vsc
150d54d527 fix jpl 2010-12-31 05:39:22 +00:00
vsc
58b838b8e1 fix bad overflow handling 2010-12-31 05:37:25 +00:00
Vitor Santos Costa
fa0e2d6954 Merge branch 'master' of ../yap-6.2 2010-12-30 22:45:06 -06:00
Vitor Santos Costa
5feb6a9dc5 SWI emulation: it is unsafe to keep arguments in regs. 2010-12-30 22:42:30 -06:00
Vitor Santos Costa
7c86b244b9 patches from Keri Harris 2010-12-30 22:14:45 -06:00
Vitor Santos Costa
eb4e59652f fix getStrem in 2010-12-29 09:29:30 -06:00
Theofrastos Mantadelis
8d77ee7769 ProbLog: Added fact map export 2010-12-20 12:36:59 +01:00
Vitor Santos Costa
8cee9a27c7 Merge branch 'master' of ../yap-6.2 2010-12-19 22:07:44 +00:00
Vitor Santos Costa
168a6366f8 enable obtaining current stream_position from SWI.y 2010-12-19 21:32:13 +00:00
Vítor Santos Costa
26c265ba13 Merge branch 'master' of ../yap-6.2 2010-12-17 20:27:26 +00:00
Theofrastos Mantadelis
90041919d4 fixed problogbdd compilation warnings 2010-12-17 12:23:03 +01:00
Vítor Santos Costa
81ca149be7 Merge branch 'master' of ../yap-6.2 2010-12-16 22:22:44 +00:00
Theofrastos Mantadelis
a442d888de Newest ProbLog version 2010-12-16 14:30:50 +01:00
Vítor Santos Costa
2dad416011 Merge branch 'master' of ../yap-6.2 2010-12-15 20:04:13 +00:00
Vítor Santos Costa
4546a22101 SWI seems to use t=0 for user_input/output. Not very clear why... 2010-12-15 20:03:22 +00:00
Vitor Santos Costa
dffacb814b Merge branch 'master' of ../yap-6.2 2010-12-13 12:40:07 +00:00
Vitor Santos Costa
3c4da56af2 allow write to find out about SWI streams in SWI mode. 2010-12-13 12:38:37 +00:00
Vítor Santos Costa
51e9cb14a7 nl should be in the SWI IO (obs from Roberto Bagnara). 2010-12-12 19:07:24 +00:00
Vítor Santos Costa
b086d8b5cd Merge branch 'master' of ../yap-6.2 2010-12-07 18:21:50 +00:00
Vítor Santos Costa
1bbded5ef7 memfiles need swi compat streams. 2010-12-07 18:20:45 +00:00
Vítor Santos Costa
856a32bd19 Merge branch 'master' of ../yap-6.2 2010-12-03 12:13:14 +00:00
Vítor Santos Costa
f8806bed9f explicitely link pthreads in clib. 2010-12-03 12:12:15 +00:00
Vítor Santos Costa
4e0390da5c Merge branch 'master' of ../yap-6.2 2010-12-02 19:42:52 +00:00
Theofrastos Mantadelis
9ee83ddf6c problog examples fix 2010-12-02 15:04:42 +01:00
Theofrastos Mantadelis
f46000cd11 office fix 2010-12-02 15:02:49 +01:00