/*********************************** Variable Elimination in Prolog How to do it Three steps: build the graph: - for all variables, find out all tables they connect to; multiply their size order by size *********************************/ :- module(clpbn_vel, [vel/3, check_if_vel_done/1, init_vel_solver/4, run_vel_solver/3]). :- attribute size/1, all_diffs/1. :- use_module(library(ordsets), [ord_union/3, ord_member/2]). :- use_module(library('clpbn/xbif'), [clpbn2xbif/3]). :- use_module(library('clpbn/graphviz'), [clpbn2gviz/4]). :- use_module(library('clpbn/dists'), [ dist/4, get_dist_domain_size/2, get_dist_matrix/5]). :- use_module(library('clpbn/utils'), [ clpbn_not_var_member/2]). :- use_module(library('clpbn/display'), [ clpbn_bind_vals/3]). :- use_module(library('clpbn/connected'), [ init_influences/3, influences/5 ]). :- use_module(library('clpbn/matrix_cpt_utils'), [project_from_CPT/3, reorder_CPT/5, multiply_CPTs/4, normalise_CPT/2, sum_out_from_CPT/4, list_from_CPT/2]). :- use_module(library(lists), [ append/3 ]). :- use_module(library('clpbn/aggregates'), [check_for_agg_vars/2]). check_if_vel_done(Var) :- get_atts(Var, [size(_)]), !. % % implementation of the well known variable elimination algorithm % vel([[]],_,_) :- !. vel([LVs],Vs0,AllDiffs) :- init_vel_solver([LVs], Vs0, AllDiffs, State), % variable elimination proper run_vel_solver([LVs], [LPs], State), % bind Probs back to variables so that they can be output. clpbn_bind_vals([LVs],[LPs],AllDiffs). init_vel_solver(Qs, Vs0, _, LVis) :- check_for_agg_vars(Vs0, Vs1), % LVi will have a list of CLPBN variables % Tables0 will have the full data on each variable init_influences(Vs1, G, RG), init_vel_solver_for_questions(Qs, G, RG, _, LVis). init_vel_solver_for_questions([], _, _, [], []). init_vel_solver_for_questions([Vs|MVs], G, RG, [NVs|MNVs0], [NVs|LVis]) :- influences(Vs, _, NVs0, G, RG), sort(NVs0, NVs), %clpbn_gviz:clpbn2gviz(user_error, test, NVs, Vs), init_vel_solver_for_questions(MVs, G, RG, MNVs0, LVis). % use a findall to recover space without needing for GC run_vel_solver(LVs, LPs, LNVs) :- findall(Ps, solve_vel(LVs, LNVs, Ps), LPs). solve_vel([LVs|_], [NVs0|_], Ps) :- length(NVs0, L), (L > 64 -> clpbn_gviz:clpbn2gviz(user_error,sort,NVs0,LVs) ; true ), find_all_clpbn_vars(NVs0, NVs0, LV0, LVi, Tables0), sort(LV0, LV), % construct the graph find_all_table_deps(Tables0, LV), process(LVi, LVs, tab(Dist,_,_)), %writeln(m:Dist),matrix:matrix_to_list(Dist,LD),writeln(LD), %exps(LD,LDE),writeln(LDE), % move from potentials back to probabilities normalise_CPT(Dist,MPs), list_from_CPT(MPs, Ps). solve_vel([_|MoreLVs], [_|MoreLVis], Ps) :- solve_vel(MoreLVs, MoreLVis, Ps). exps([],[]). exps([L|LD],[O|LDE]) :- O is exp(L), exps(LD,LDE). keys([],[]). keys([V|NVs0],[K:E|Ks]) :- clpbn:get_atts(V,[key(K),evidence(E)]), !, keys(NVs0,Ks). keys([V|NVs0],[K|Ks]) :- clpbn:get_atts(V,[key(K)]), keys(NVs0,Ks). % % just get a list of variables plus associated tables % find_all_clpbn_vars([], _, [], [], []) :- !. find_all_clpbn_vars([V|Vs], NVs0, [Var|LV], ProcessedVars, [table(I,Table,Parents,Sizes)|Tables]) :- var_with_deps(V, NVs0, Table, Parents, Sizes, Ev, Vals), !, % variables with evidence should not be processed. (var(Ev) -> Var = var(V,I,Sz,Vals,Parents,Ev,_,_), vel_get_dist_size(V,Sz), ProcessedVars = [Var|ProcessedVars0] ; ProcessedVars = ProcessedVars0 ), find_all_clpbn_vars(Vs, NVs0, LV, ProcessedVars0, Tables). var_with_deps(V, NVs0, Table, Deps, Sizes, Ev, Vals) :- clpbn:get_atts(V, [dist(Id,Parents)]), get_dist_matrix(Id,Parents,_,Vals,TAB0), ( clpbn:get_atts(V, [evidence(Ev)]) -> true ; true ), !, % set CPT in canonical form reorder_CPT([V|Parents],TAB0,Deps0,TAB1,Sizes1), % remove evidence. simplify_evidence(Deps0, NVs0, TAB1, Deps0, Sizes1, Table, Deps, Sizes). find_all_table_deps(Tables0, LV) :- find_dep_graph(Tables0, DepGraph0), sort(DepGraph0, DepGraph), add_table_deps_to_variables(LV, DepGraph). find_dep_graph([], []) :- !. find_dep_graph([table(I,Tab,Deps,Sizes)|Tables], DepGraph) :- add_table_deps(Deps, I, Deps, Tab, Sizes, DepGraph0, DepGraph), find_dep_graph(Tables, DepGraph0). add_table_deps([], _, _, _, _, DepGraph, DepGraph). add_table_deps([V|Deps], I, Deps0, Table, Sizes, DepGraph0, [V-tab(Table,Deps0,Sizes)|DepGraph]) :- add_table_deps(Deps, I, Deps0, Table, Sizes, DepGraph0, DepGraph). add_table_deps_to_variables([], []). add_table_deps_to_variables([var(V,_,_,_,_,_,Deps,K)|LV], DepGraph) :- steal_deps_for_variable(DepGraph, V, NDepGraph, Deps), compute_size(Deps,[],K), % ( clpbn:get_atts(V,[key(Key)]) -> format('~w:~w~n',[Key,K]) ; true), add_table_deps_to_variables(LV, NDepGraph). steal_deps_for_variable([V-Info|DepGraph], V0, NDepGraph, [Info|Deps]) :- V == V0, !, steal_deps_for_variable(DepGraph, V0, NDepGraph, Deps). steal_deps_for_variable(DepGraph, _, DepGraph, []). compute_size([],Vs,K) :- % use sizes now % length(Vs,K). multiply_sizes(Vs,1,K). compute_size([tab(_,Vs,_)|Tabs],Vs0,K) :- ord_union(Vs,Vs0,VsI), compute_size(Tabs,VsI,K). multiply_sizes([],K,K). multiply_sizes([V|Vs],K0,K) :- vel_get_dist_size(V, Sz), KI is K0*Sz, multiply_sizes(Vs,KI,K). process(LV0, InputVs, Out) :- find_best(LV0, V0, -1, V, WorkTables, LVI, InputVs), V \== V0, !, % clpbn:get_atts(V,[key(K)]), writeln(chosen:K), % format('1 ~w: ~w~n',[V,WorkTables]), write_tables(WorkTables), multiply_tables(WorkTables, tab(Tab0,Deps0,_)), reorder_CPT(Deps0,Tab0,Deps,Tab,Sizes), Table = tab(Tab,Deps,Sizes), % format('2 ~w: ~w~n',[V,Table]), project_from_CPT(V,Table,NewTable), % format('3 ~w: ~w~n',[V,NewTable]), write_tables([NewTable]), include(LVI,NewTable,V,LV2), process(LV2, InputVs, Out). process(LV0, _, Out) :- fetch_tables(LV0, WorkTables0), sort(WorkTables0, WorkTables), % format('4 ~w: ~w~n',[LV0,WorkTables]), write_tables(WorkTables), multiply_tables(WorkTables, Out). write_tables([]). write_tables([tab(Mat,_,_)|WorkTables]) :- matrix:matrix_to_list(Mat,L), writeln(L), write_tables(WorkTables). find_best([], V, _TF, V, _, [], _). %:- % clpbn:get_atts(V,[key(K)]), writeln(chosen:K:_TF). % root_with_single_child %find_best([var(V,I,_,_,[],Ev,[Dep],K)|LV], _, _, V, [Dep], LVF, Inputs) :- !. find_best([var(V,I,Sz,Vals,Parents,Ev,Deps,K)|LV], _, Threshold, VF, NWorktables, LVF, Inputs) :- ( K < Threshold ; Threshold < 0), clpbn_not_var_member(Inputs, V), !, find_best(LV, V, K, VF, WorkTables,LV0, Inputs), (V == VF -> LVF = LV0, Deps = NWorktables ; LVF = [var(V,I,Sz,Vals,Parents,Ev,Deps,K)|LV0], WorkTables = NWorktables ). find_best([V|LV], V0, Threshold, VF, WorkTables, [V|LVF], Inputs) :- find_best(LV, V0, Threshold, VF, WorkTables, LVF, Inputs). multiply_tables([Table], Table) :- !. %, Table = tab(T,D,S),matrix:matrix_to_list(T,L),writeln(D:S:L). multiply_tables([TAB1, TAB2| Tables], Out) :- %TAB1 = tab(T,_,_),matrix:matrix_to_list(T,L),writeln(doing:L), multiply_CPTs(TAB1, TAB2, TAB, _), multiply_tables([TAB| Tables], Out). simplify_evidence([], _, Table, Deps, Sizes, Table, Deps, Sizes). simplify_evidence([V|VDeps], NVs0, Table0, Deps0, Sizes0, Table, Deps, Sizes) :- clpbn:get_atts(V, [evidence(_)]), !, project_from_CPT(V,tab(Table0,Deps0,Sizes0),tab(NewTable,Deps1,Sizes1)), simplify_evidence(VDeps, NVs0, NewTable, Deps1, Sizes1, Table, Deps, Sizes). simplify_evidence([V|VDeps], NVs0, Table0, Deps0, Sizes0, Table, Deps, Sizes) :- ord_member(V, NVs0), !, simplify_evidence(VDeps, NVs0, Table0, Deps0, Sizes0, Table, Deps, Sizes). simplify_evidence([V|VDeps], NVs0, Table0, Deps0, Sizes0, Table, Deps, Sizes) :- project_from_CPT(V,tab(Table0,Deps0,Sizes0),tab(NewTable,Deps1,Sizes1)), simplify_evidence(VDeps, NVs0, NewTable, Deps1, Sizes1, Table, Deps, Sizes). fetch_tables([], []). fetch_tables([var(_,_,_,_,_,_,Deps,_)|LV0], Tables) :- append(Deps,Tables0,Tables), fetch_tables(LV0, Tables0). include([],_,_,[]). include([var(V,P,VSz,D,Parents,Ev,Tabs,Est)|LV],tab(T,Vs,Sz),V1,[var(V,P,VSz,D,Parents,Ev,Tabs,Est)|NLV]) :- clpbn_not_var_member(Vs,V), !, include(LV,tab(T,Vs,Sz),V1,NLV). include([var(V,P,VSz,D,Parents,Ev,Tabs,_)|LV],Table,NV,[var(V,P,VSz,D,Parents,Ev,NTabs,NEst)|NLV]) :- update_tables(Tabs,NTabs,Table,NV), compute_size(NTabs, [], NEst), include(LV,Table,NV,NLV). update_tables([],[Table],Table,_). update_tables([tab(Tab0,Vs,Sz)|Tabs],[tab(Tab0,Vs,Sz)|NTabs],Table,V) :- clpbn_not_var_member(Vs,V), !, update_tables(Tabs,NTabs,Table,V). update_tables([_|Tabs],NTabs,Table,V) :- update_tables(Tabs,NTabs,Table,V). vel_get_dist_size(V,Sz) :- get_atts(V, [size(Sz)]), !. vel_get_dist_size(V,Sz) :- clpbn:get_atts(V,dist(Id,_)), !, get_dist_domain_size(Id,Sz), put_atts(V, [size(Sz)]).