#include #include "ElimGraph.h" #include "BayesNet.h" ElimHeuristic ElimGraph::elimHeuristic_ = MIN_NEIGHBORS; ElimGraph::ElimGraph (const BayesNet& bayesNet) { const BnNodeSet& bnNodes = bayesNet.getBayesNodes(); for (unsigned i = 0; i < bnNodes.size(); i++) { if (bnNodes[i]->hasEvidence() == false) { addNode (new EgNode (bnNodes[i])); } } for (unsigned i = 0; i < bnNodes.size(); i++) { if (bnNodes[i]->hasEvidence() == false) { EgNode* n = getEgNode (bnNodes[i]->varId()); const BnNodeSet& childs = bnNodes[i]->getChilds(); for (unsigned j = 0; j < childs.size(); j++) { if (childs[j]->hasEvidence() == false) { addEdge (n, getEgNode (childs[j]->varId())); } } } } for (unsigned i = 0; i < bnNodes.size(); i++) { vector neighs; const vector& parents = bnNodes[i]->getParents(); for (unsigned i = 0; i < parents.size(); i++) { if (parents[i]->hasEvidence() == false) { neighs.push_back (getEgNode (parents[i]->varId())); } } if (neighs.size() > 0) { for (unsigned i = 0; i < neighs.size() - 1; i++) { for (unsigned j = i+1; j < neighs.size(); j++) { if (!neighbors (neighs[i], neighs[j])) { addEdge (neighs[i], neighs[j]); } } } } } setIndexes(); } ElimGraph::~ElimGraph (void) { for (unsigned i = 0; i < nodes_.size(); i++) { delete nodes_[i]; } } void ElimGraph::addNode (EgNode* n) { nodes_.push_back (n); varMap_.insert (make_pair (n->varId(), n)); } EgNode* ElimGraph::getEgNode (VarId vid) const { unordered_map::const_iterator it =varMap_.find (vid); if (it ==varMap_.end()) { return 0; } else { return it->second; } } VarIds ElimGraph::getEliminatingOrder (const VarIds& exclude) { VarIds elimOrder; marked_.resize (nodes_.size(), false); for (unsigned i = 0; i < exclude.size(); i++) { EgNode* node = getEgNode (exclude[i]); assert (node); marked_[*node] = true; } unsigned nVarsToEliminate = nodes_.size() - exclude.size(); for (unsigned i = 0; i < nVarsToEliminate; i++) { EgNode* node = getLowestCostNode(); marked_[*node] = true; elimOrder.push_back (node->varId()); connectAllNeighbors (node); } return elimOrder; } EgNode* ElimGraph::getLowestCostNode (void) const { EgNode* bestNode = 0; unsigned minCost = std::numeric_limits::max(); for (unsigned i = 0; i < nodes_.size(); i++) { if (marked_[i]) continue; unsigned cost = 0; switch (elimHeuristic_) { case MIN_NEIGHBORS: cost = getNeighborsCost (nodes_[i]); break; case MIN_WEIGHT: cost = getWeightCost (nodes_[i]); break; case MIN_FILL: cost = getFillCost (nodes_[i]); break; case WEIGHTED_MIN_FILL: cost = getWeightedFillCost (nodes_[i]); break; default: assert (false); } if (cost < minCost) { bestNode = nodes_[i]; minCost = cost; } } assert (bestNode); return bestNode; } unsigned ElimGraph::getNeighborsCost (const EgNode* n) const { unsigned cost = 0; const vector& neighs = n->neighbors(); for (unsigned i = 0; i < neighs.size(); i++) { if (marked_[*neighs[i]] == false) { cost ++; } } return cost; } unsigned ElimGraph::getWeightCost (const EgNode* n) const { unsigned cost = 1; const vector& neighs = n->neighbors(); for (unsigned i = 0; i < neighs.size(); i++) { if (marked_[*neighs[i]] == false) { cost *= neighs[i]->nrStates(); } } return cost; } unsigned ElimGraph::getFillCost (const EgNode* n) const { unsigned cost = 0; const vector& neighs = n->neighbors(); if (neighs.size() > 0) { for (unsigned i = 0; i < neighs.size() - 1; i++) { if (marked_[*neighs[i]] == true) continue; for (unsigned j = i+1; j < neighs.size(); j++) { if (marked_[*neighs[j]] == true) continue; if (!neighbors (neighs[i], neighs[j])) { cost ++; } } } } return cost; } unsigned ElimGraph::getWeightedFillCost (const EgNode* n) const { unsigned cost = 0; const vector& neighs = n->neighbors(); if (neighs.size() > 0) { for (unsigned i = 0; i < neighs.size() - 1; i++) { if (marked_[*neighs[i]] == true) continue; for (unsigned j = i+1; j < neighs.size(); j++) { if (marked_[*neighs[j]] == true) continue; if (!neighbors (neighs[i], neighs[j])) { cost += neighs[i]->nrStates() * neighs[j]->nrStates(); } } } } return cost; } void ElimGraph::connectAllNeighbors (const EgNode* n) { const vector& neighs = n->neighbors(); if (neighs.size() > 0) { for (unsigned i = 0; i < neighs.size() - 1; i++) { if (marked_[*neighs[i]] == true) continue; for (unsigned j = i+1; j < neighs.size(); j++) { if (marked_[*neighs[j]] == true) continue; if (!neighbors (neighs[i], neighs[j])) { addEdge (neighs[i], neighs[j]); } } } } } bool ElimGraph::neighbors (const EgNode* n1, const EgNode* n2) const { const vector& neighs = n1->neighbors(); for (unsigned i = 0; i < neighs.size(); i++) { if (neighs[i] == n2) { return true; } } return false; } void ElimGraph::setIndexes (void) { for (unsigned i = 0; i < nodes_.size(); i++) { nodes_[i]->setIndex (i); } } void ElimGraph::printGraphicalModel (void) const { for (unsigned i = 0; i < nodes_.size(); i++) { cout << "node " << nodes_[i]->label() << " neighs:" ; vector neighs = nodes_[i]->neighbors(); for (unsigned j = 0; j < neighs.size(); j++) { cout << " " << neighs[j]->label(); } cout << endl; } } void ElimGraph::exportToGraphViz (const char* fileName, bool showNeighborless, const VarIds& highlightVarIds) const { ofstream out (fileName); if (!out.is_open()) { cerr << "error: cannot open file to write at " ; cerr << "Markov::exportToDotFile()" << endl; abort(); } out << "strict graph {" << endl; for (unsigned i = 0; i < nodes_.size(); i++) { if (showNeighborless || nodes_[i]->neighbors().size() != 0) { out << '"' << nodes_[i]->label() << '"' ; if (nodes_[i]->hasEvidence()) { out << " [style=filled, fillcolor=yellow]" << endl; } else { out << endl; } } } for (unsigned i = 0; i < highlightVarIds.size(); i++) { EgNode* node =getEgNode (highlightVarIds[i]); if (node) { out << '"' << node->label() << '"' ; out << " [shape=box3d]" << endl; } else { cout << "error: invalid variable id: " << highlightVarIds[i] << endl; abort(); } } for (unsigned i = 0; i < nodes_.size(); i++) { vector neighs = nodes_[i]->neighbors(); for (unsigned j = 0; j < neighs.size(); j++) { out << '"' << nodes_[i]->label() << '"' << " -- " ; out << '"' << neighs[j]->label() << '"' << endl; } } out << "}" << endl; out.close(); }