#include #include #include #include #include #include #include "callgrind.h" #include "BayesNet.h" #include "BayesNode.h" #include "BPSolver.h" using namespace std; int createNetwork (void) { Statistics::numCreatedNets ++; cout << "creating network number " << Statistics::numCreatedNets << endl; if (Statistics::numCreatedNets == 1) { //CALLGRIND_START_INSTRUMENTATION; } BayesNet* bn = new BayesNet(); YAP_Term varList = YAP_ARG1; while (varList != YAP_TermNil()) { YAP_Term var = YAP_HeadOfTerm (varList); unsigned varId = (unsigned) YAP_IntOfTerm (YAP_ArgOfTerm (1, var)); unsigned dsize = (unsigned) YAP_IntOfTerm (YAP_ArgOfTerm (2, var)); int evidence = (int) YAP_IntOfTerm (YAP_ArgOfTerm (3, var)); YAP_Term parentL = YAP_ArgOfTerm (4, var); unsigned distId = (unsigned) YAP_IntOfTerm (YAP_ArgOfTerm (5, var)); NodeSet parents; while (parentL != YAP_TermNil()) { unsigned parentId = (unsigned) YAP_IntOfTerm (YAP_HeadOfTerm (parentL)); BayesNode* parent = bn->getNode (parentId); if (!parent) { parent = bn->addNode (parentId); } parents.push_back (parent); parentL = YAP_TailOfTerm (parentL); } Distribution* dist = bn->getDistribution (distId); if (!dist) { dist = new Distribution (distId); bn->addDistribution (dist); } BayesNode* node = bn->getNode (varId); if (node) { node->setData (dsize, evidence, parents, dist); } else { bn->addNode (varId, dsize, evidence, parents, dist); } varList = YAP_TailOfTerm (varList); } bn->setIndexes(); if (Statistics::numCreatedNets == 1688) { Statistics::writeStats(); //Statistics::writeStats(); //CALLGRIND_STOP_INSTRUMENTATION; //CALLGRIND_DUMP_STATS; //exit (0); } YAP_Int p = (YAP_Int) (bn); return YAP_Unify (YAP_MkIntTerm (p), YAP_ARG2); } int setExtraVarsInfo (void) { BayesNet* bn = (BayesNet*) YAP_IntOfTerm (YAP_ARG1); YAP_Term varsInfoL = YAP_ARG2; while (varsInfoL != YAP_TermNil()) { YAP_Term head = YAP_HeadOfTerm (varsInfoL); unsigned varId = YAP_IntOfTerm (YAP_ArgOfTerm (1, head)); YAP_Atom label = YAP_AtomOfTerm (YAP_ArgOfTerm (2, head)); YAP_Term domainL = YAP_ArgOfTerm (3, head); Domain domain; while (domainL != YAP_TermNil()) { YAP_Atom atom = YAP_AtomOfTerm (YAP_HeadOfTerm (domainL)); domain.push_back ((char*) YAP_AtomName (atom)); domainL = YAP_TailOfTerm (domainL); } BayesNode* node = bn->getNode (varId); assert (node); node->setLabel ((char*) YAP_AtomName (label)); node->setDomain (domain); varsInfoL = YAP_TailOfTerm (varsInfoL); } return TRUE; } int setParameters (void) { BayesNet* bn = (BayesNet*) YAP_IntOfTerm (YAP_ARG1); YAP_Term distList = YAP_ARG2; while (distList != YAP_TermNil()) { YAP_Term dist = YAP_HeadOfTerm (distList); unsigned distId = (unsigned) YAP_IntOfTerm (YAP_ArgOfTerm (1, dist)); YAP_Term paramL = YAP_ArgOfTerm (2, dist); ParamSet params; while (paramL!= YAP_TermNil()) { params.push_back ((double) YAP_FloatOfTerm (YAP_HeadOfTerm (paramL))); paramL = YAP_TailOfTerm (paramL); } bn->getDistribution(distId)->updateParameters(params); distList = YAP_TailOfTerm (distList); } return TRUE; } int runSolver (void) { BayesNet* bn = (BayesNet*) YAP_IntOfTerm (YAP_ARG1); YAP_Term taskList = YAP_ARG2; vector tasks; NodeSet marginalVars; while (taskList != YAP_TermNil()) { if (YAP_IsPairTerm (YAP_HeadOfTerm (taskList))) { NodeSet jointVars; YAP_Term jointList = YAP_HeadOfTerm (taskList); while (jointList != YAP_TermNil()) { unsigned varId = (unsigned) YAP_IntOfTerm (YAP_HeadOfTerm (jointList)); assert (bn->getNode (varId)); jointVars.push_back (bn->getNode (varId)); jointList = YAP_TailOfTerm (jointList); } tasks.push_back (jointVars); } else { unsigned varId = (unsigned) YAP_IntOfTerm (YAP_HeadOfTerm (taskList)); BayesNode* node = bn->getNode (varId); assert (node); tasks.push_back (NodeSet() = {node}); marginalVars.push_back (node); } taskList = YAP_TailOfTerm (taskList); } /* cout << "tasks to resolve:" << endl; for (unsigned i = 0; i < tasks.size(); i++) { cout << "i" << ": " ; if (tasks[i].size() == 1) { cout << tasks[i][0]->getVarId() << endl; } else { for (unsigned j = 0; j < tasks[i].size(); j++) { cout << tasks[i][j]->getVarId() << " " ; } cout << endl; } } */ cerr << "prunning now..." << endl; BayesNet* prunedNet = bn->pruneNetwork (marginalVars); bn->printNetworkToFile ("net.txt"); BPSolver solver (*prunedNet); cerr << "solving marginals now..." << endl; solver.runSolver(); cerr << "calculating joints now ..." << endl; vector results; results.reserve (tasks.size()); for (unsigned i = 0; i < tasks.size(); i++) { if (tasks[i].size() == 1) { BayesNode* node = prunedNet->getNode (tasks[i][0]->getVarId()); results.push_back (solver.getPosterioriOf (node)); } else { BPSolver solver2 (*bn); cout << "calculating an join dist on: " ; for (unsigned j = 0; j < tasks[i].size(); j++) { cout << tasks[i][j]->getVarId() << " " ; } cout << "..." << endl; results.push_back (solver2.getJointDistribution (tasks[i])); } } delete prunedNet; YAP_Term list = YAP_TermNil(); for (int i = results.size() - 1; i >= 0; i--) { const ParamSet& beliefs = results[i]; YAP_Term queryBeliefsL = YAP_TermNil(); for (int j = beliefs.size() - 1; j >= 0; j--) { YAP_Term belief = YAP_MkFloatTerm (beliefs[j]); queryBeliefsL = YAP_MkPairTerm (belief, queryBeliefsL); } list = YAP_MkPairTerm (queryBeliefsL, list); } return YAP_Unify (list, YAP_ARG3); } int deleteBayesNet (void) { BayesNet* bn = (BayesNet*) YAP_IntOfTerm (YAP_ARG1); bn->freeDistributions(); delete bn; return TRUE; } extern "C" void init_predicates (void) { YAP_UserCPredicate ("create_network", createNetwork, 2); YAP_UserCPredicate ("set_extra_vars_info", setExtraVarsInfo, 2); YAP_UserCPredicate ("set_parameters", setParameters, 2); YAP_UserCPredicate ("run_solver", runSolver, 3); YAP_UserCPredicate ("delete_bayes_net", deleteBayesNet, 1); }