Add a source file for Indexer class

- Move some non-performance critical methods to the source file
- Fix some implicit declarions of members in iomanip
- Fix declaration order in Makefile.in

packages/CLPBN/horus/BeliefProp.cpp

@@ -2,6 +2,7 @@
 
 #include <algorithm>
 #include <iostream>
+#include <iomanip>
 #include <sstream>
 
 #include "BeliefProp.h"

packages/CLPBN/horus/GroundSolver.cpp

@@ -3,6 +3,7 @@
 #include <vector>
 #include <string>
 #include <iostream>
+#include <iomanip>
 
 #include "GroundSolver.h"
 #include "VarElim.h"

packages/CLPBN/horus/Indexer.cpp

@@ -0,0 +1,32 @@
+#include <sstream>
+#include <iomanip>
+
+#include "Indexer.h"
+
+
+namespace Horus {
+
+std::ostream&
+operator<< (std::ostream& os, const Indexer& indexer)
+{
+  os << "(" ;
+  os << std::setw (2) << std::setfill('0') << indexer.index_;
+  os << ") " ;
+  os << indexer.indices_;
+  return os;
+}
+
+
+
+std::ostream&
+operator<< (std::ostream &os, const MapIndexer& indexer)
+{
+  os << "(" ;
+  os << std::setw (2) << std::setfill('0') << indexer.index_;
+  os << ") " ;
+  os << indexer.indices_;
+  return os;
+}
+
+}  // namespace Horus
+

packages/CLPBN/horus/Indexer.h

@@ -4,8 +4,6 @@
 #include <vector>
 #include <algorithm>
 #include <numeric>
-#include <sstream>
-#include <iomanip>
 
 #include "Util.h"
 
@@ -187,18 +185,6 @@ Indexer::calculateOffsets (void)
 
 
 
-inline std::ostream&
-operator<< (std::ostream& os, const Indexer& indexer)
-{
-  os << "(" ;
-  os << std::setw (2) << std::setfill('0') << indexer.index_;
-  os << ") " ;
-  os << indexer.indices_;
-  return os;
-}
-
-
-
 class MapIndexer {
   public:
     MapIndexer (const Ranges& ranges, const std::vector<bool>& mask);
@@ -237,7 +223,9 @@ class MapIndexer {
 
 
 inline
-MapIndexer::MapIndexer (const Ranges& ranges, const std::vector<bool>& mask)
+MapIndexer::MapIndexer (
+    const Ranges& ranges,
+    const std::vector<bool>& mask)
     : index_(0), indices_(ranges.size(), 0), ranges_(ranges),
       valid_(true)
 {
@@ -349,18 +337,6 @@ MapIndexer::reset (void)
   std::fill (indices_.begin(), indices_.end(), 0);
 }
 
-
-
-inline std::ostream&
-operator<< (std::ostream &os, const MapIndexer& indexer)
-{
-  os << "(" ;
-  os << std::setw (2) << std::setfill('0') << indexer.index_;
-  os << ") " ;
-  os << indexer.indices_;
-  return os;
-}
-
 }  // namespace Horus
 
 #endif  // YAP_PACKAGES_CLPBN_HORUS_INDEXER_H_

packages/CLPBN/horus/Makefile.in

@@ -54,6 +54,7 @@ HEADERS = \
 	$(srcdir)/ElimGraph.h \
 	$(srcdir)/Factor.h \
 	$(srcdir)/FactorGraph.h \
+	$(srcdir)/GroundSolver.h \
 	$(srcdir)/Histogram.h \
 	$(srcdir)/Horus.h \
 	$(srcdir)/Indexer.h \
@@ -67,7 +68,6 @@ HEADERS = \
 	$(srcdir)/Parfactor.h \
 	$(srcdir)/ParfactorList.h \
 	$(srcdir)/ProbFormula.h \
-	$(srcdir)/GroundSolver.h \
 	$(srcdir)/TinySet.h \
 	$(srcdir)/Util.h \
 	$(srcdir)/Var.h \
@@ -83,9 +83,11 @@ CPP_SOURCES = \
 	$(srcdir)/ElimGraph.cpp \
 	$(srcdir)/Factor.cpp \
 	$(srcdir)/FactorGraph.cpp \
+	$(srcdir)/GroundSolver.cpp \
 	$(srcdir)/Histogram.cpp \
 	$(srcdir)/HorusCli.cpp \
 	$(srcdir)/HorusYap.cpp \
+	$(srcdir)/Indexer.cpp \
 	$(srcdir)/LiftedBp.cpp \
 	$(srcdir)/LiftedKc.cpp \
 	$(srcdir)/LiftedOperations.cpp \
@@ -95,7 +97,6 @@ CPP_SOURCES = \
 	$(srcdir)/Parfactor.cpp \
 	$(srcdir)/ParfactorList.cpp \
 	$(srcdir)/ProbFormula.cpp \
-	$(srcdir)/GroundSolver.cpp \
 	$(srcdir)/Util.cpp \
 	$(srcdir)/Var.cpp \
 	$(srcdir)/VarElim.cpp \
@@ -110,8 +111,10 @@ OBJS = \
 	ElimGraph.o \
 	Factor.o \
 	FactorGraph.o \
+	GroundSolver.o \
 	Histogram.o \
 	HorusYap.o \
+	Indexer.o \
 	LiftedBp.o \
 	LiftedKc.o \
 	LiftedOperations.o \
@@ -121,7 +124,6 @@ OBJS = \
 	ProbFormula.o \
 	Parfactor.o \
 	ParfactorList.o \
-	GroundSolver.o \
 	Util.o \
 	Var.o \
 	VarElim.o \
@@ -135,8 +137,9 @@ HCLI_OBJS = \
 	ElimGraph.o \
 	Factor.o \
 	FactorGraph.o \
-	HorusCli.o \
 	GroundSolver.o \
+	HorusCli.o \
+	Indexer.o \
 	Util.o \
 	Var.o \
 	VarElim.o \

packages/CLPBN/horus/WeightedBp.cpp

@@ -1,9 +1,11 @@
 #include <cassert>
 
 #include <iostream>
+#include <iomanip>
 
 #include "WeightedBp.h"
 
+
 namespace Horus {
 
 WeightedBp::~WeightedBp (void)