remove unnecessary files

This commit is contained in:
Tiago Gomes 2012-03-31 23:44:08 +01:00
parent 313f9a036a
commit e9cc1a8be2
7 changed files with 0 additions and 665 deletions

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@ -1,236 +0,0 @@
#
# default base directory for YAP installation
# (EROOT for architecture-dependent files)
#
GCC = yes
prefix = /home/tgomes
exec_prefix = ${prefix}
ROOTDIR = $(prefix)
EROOTDIR = ${prefix}
abs_top_builddir = /home/tgomes/yap-6.3
#
# where the binary should be
#
BINDIR = $(EROOTDIR)/bin
#
# where YAP should look for libraries
#
LIBDIR=${exec_prefix}/lib
YAPLIBDIR=${exec_prefix}/lib/Yap
#
#
CC=gcc
CXX=g++
# normal
#CXXFLAGS= -std=c++0x -shared -fPIC -O3 -fomit-frame-pointer -Wall -g -O2 $(YAP_EXTRAS) $(DEFS) -D_YAP_NOT_INSTALLED_=1 -I$(srcdir) -I../../../.. -I$(srcdir)/../../../../include -DNDEBUG
# debug
CXXFLAGS= -std=c++0x -shared -fPIC -O3 -fomit-frame-pointer -Wall -g -O2 $(YAP_EXTRAS) $(DEFS) -D_YAP_NOT_INSTALLED_=1 -I$(srcdir) -I../../../.. -I$(srcdir)/../../../../include -g -O0 -Wextra
#
#
# You shouldn't need to change what follows.
#
INSTALL=/usr/bin/install -c
INSTALL_DATA=${INSTALL} -m 644
INSTALL_PROGRAM=${INSTALL}
SHELL=/bin/sh
RANLIB=ranlib
srcdir=.
SO=so
#4.1VPATH=.:./OPTYap
CWD=$(PWD)
HEADERS = \
$(srcdir)/GraphicalModel.h \
$(srcdir)/BayesNet.h \
$(srcdir)/BayesNode.h \
$(srcdir)/ElimGraph.h \
$(srcdir)/FactorGraph.h \
$(srcdir)/Factor.h \
$(srcdir)/CFactorGraph.h \
$(srcdir)/ConstraintTree.h \
$(srcdir)/Solver.h \
$(srcdir)/VarElimSolver.h \
$(srcdir)/BnBpSolver.h \
$(srcdir)/FgBpSolver.h \
$(srcdir)/CbpSolver.h \
$(srcdir)/FoveSolver.h \
$(srcdir)/VarNode.h \
$(srcdir)/Indexer.h \
$(srcdir)/Parfactor.h \
$(srcdir)/ProbFormula.h \
$(srcdir)/Histogram.h \
$(srcdir)/ParfactorList.h \
$(srcdir)/LiftedUtils.h \
$(srcdir)/TinySet.h \
$(srcdir)/Util.h \
$(srcdir)/Horus.h \
$(srcdir)/xmlParser/xmlParser.h
CPP_SOURCES = \
$(srcdir)/BayesNet.cpp \
$(srcdir)/BayesNode.cpp \
$(srcdir)/ElimGraph.cpp \
$(srcdir)/FactorGraph.cpp \
$(srcdir)/Factor.cpp \
$(srcdir)/CFactorGraph.cpp \
$(srcdir)/ConstraintTree.cpp \
$(srcdir)/VarNode.cpp \
$(srcdir)/Solver.cpp \
$(srcdir)/VarElimSolver.cpp \
$(srcdir)/BnBpSolver.cpp \
$(srcdir)/FgBpSolver.cpp \
$(srcdir)/CbpSolver.cpp \
$(srcdir)/FoveSolver.cpp \
$(srcdir)/Parfactor.cpp \
$(srcdir)/ProbFormula.cpp \
$(srcdir)/Histogram.cpp \
$(srcdir)/ParfactorList.cpp \
$(srcdir)/LiftedUtils.cpp \
$(srcdir)/Util.cpp \
$(srcdir)/HorusYap.cpp \
$(srcdir)/HorusCli.cpp \
$(srcdir)/xmlParser/xmlParser.cpp
OBJS = \
BayesNet.o \
BayesNode.o \
ElimGraph.o \
FactorGraph.o \
Factor.o \
CFactorGraph.o \
ConstraintTree.o \
VarNode.o \
Solver.o \
VarElimSolver.o \
BnBpSolver.o \
FgBpSolver.o \
CbpSolver.o \
FoveSolver.o \
Parfactor.o \
ProbFormula.o \
Histogram.o \
ParfactorList.o \
LiftedUtils.o \
Util.o \
HorusYap.o
HCLI_OBJS = \
BayesNet.o \
BayesNode.o \
ElimGraph.o \
FactorGraph.o \
Factor.o \
CFactorGraph.o \
ConstraintTree.o \
VarNode.o \
Solver.o \
VarElimSolver.o \
BnBpSolver.o \
FgBpSolver.o \
CbpSolver.o \
FoveSolver.o \
Parfactor.o \
ProbFormula.o \
Histogram.o \
ParfactorList.o \
LiftedUtils.o \
Util.o \
xmlParser/xmlParser.o \
HorusCli.o
SOBJS=horus.so
all: $(SOBJS) hcli
# default rule
%.o : $(srcdir)/%.cpp
$(CXX) -c $(CXXFLAGS) $< -o $@
xmlParser/xmlParser.o : $(srcdir)/xmlParser/xmlParser.cpp
$(CXX) -c $(CXXFLAGS) $< -o $@
horus.so: $(OBJS)
g++ -shared -export-dynamic -o horus.so $(OBJS) -Wl,-R,$(YAPLIBDIR) -Wl,-R,$(LIBDIR)
hcli: $(HCLI_OBJS)
$(CXX) -o hcli $(HCLI_OBJS)
install: all
$(INSTALL_PROGRAM) $(SOBJS) $(DESTDIR) $(YAPLIBDIR)
clean:
rm -f *.o *~ $(OBJS) $(SOBJS) *.BAK hcli xmlParser/*.o
erase_dots:
rm -f *.dot *.png
depend: $(HEADERS) $(CPP_SOURCES)
-@if test "$(GCC)" = yes; then\
$(CC) -std=c++0x -MM -MG $(CFLAGS) -I$(srcdir) -I$(srcdir)/../../../../include -I$(srcdir)/../../../../H $(CPP_SOURCES) >> Makefile;\
else\
makedepend -f - -- $(CFLAGS) -I$(srcdir)/../../../../H -I$(srcdir)/../../../../include -- $(CPP_SOURCES) |\
sed 's|.*/\([^:]*\):|\1:|' >> Makefile ;\
fi
# DO NOT DELETE THIS LINE -- make depend depends on it.
BayesNet.o: BayesNet.cpp xmlParser/xmlParser.h BayesNet.h \
GraphicalModel.h VarNode.h Horus.h BayesNode.h Util.h
BayesNode.o: BayesNode.cpp BayesNode.h VarNode.h Horus.h
ElimGraph.o: ElimGraph.cpp ElimGraph.h FactorGraph.h GraphicalModel.h \
VarNode.h Horus.h Factor.h Util.h BayesNet.h BayesNode.h
FactorGraph.o: FactorGraph.cpp FactorGraph.h GraphicalModel.h VarNode.h \
Horus.h Factor.h Util.h BayesNet.h BayesNode.h
Factor.o: Factor.cpp Factor.h VarNode.h Horus.h Util.h Indexer.h
CFactorGraph.o: CFactorGraph.cpp CFactorGraph.h FactorGraph.h \
GraphicalModel.h VarNode.h Horus.h Factor.h Util.h
ConstraintTree.o: ConstraintTree.cpp ConstraintTree.h TinySet.h \
LiftedUtils.h Util.h Horus.h
VarNode.o: VarNode.cpp VarNode.h Horus.h GraphicalModel.h
Solver.o: Solver.cpp Solver.h GraphicalModel.h VarNode.h Horus.h Util.h
VarElimSolver.o: VarElimSolver.cpp VarElimSolver.h Solver.h \
GraphicalModel.h VarNode.h Horus.h FactorGraph.h Factor.h Util.h \
BayesNet.h BayesNode.h ElimGraph.h
BnBpSolver.o: BnBpSolver.cpp BnBpSolver.h Solver.h GraphicalModel.h \
VarNode.h Horus.h BayesNet.h BayesNode.h Util.h Indexer.h
FgBpSolver.o: FgBpSolver.cpp FgBpSolver.h Solver.h GraphicalModel.h \
VarNode.h Horus.h Factor.h Util.h FactorGraph.h Indexer.h
CbpSolver.o: CbpSolver.cpp CbpSolver.h FgBpSolver.h Solver.h \
GraphicalModel.h VarNode.h Horus.h Factor.h Util.h FactorGraph.h \
CFactorGraph.h
FoveSolver.o: FoveSolver.cpp FoveSolver.h ParfactorList.h Parfactor.h \
ProbFormula.h ConstraintTree.h TinySet.h LiftedUtils.h Util.h Horus.h \
Histogram.h
Parfactor.o: Parfactor.cpp Parfactor.h ProbFormula.h ConstraintTree.h \
TinySet.h LiftedUtils.h Util.h Horus.h Histogram.h Indexer.h VarNode.h
ProbFormula.o: ProbFormula.cpp ProbFormula.h ConstraintTree.h TinySet.h \
LiftedUtils.h Util.h Horus.h
Histogram.o: Histogram.cpp Histogram.h Util.h Horus.h
ParfactorList.o: ParfactorList.cpp ParfactorList.h Parfactor.h \
ProbFormula.h ConstraintTree.h TinySet.h LiftedUtils.h Util.h Horus.h
LiftedUtils.o: LiftedUtils.cpp LiftedUtils.h TinySet.h Util.h Horus.h \
ConstraintTree.h
Util.o: Util.cpp Util.h Horus.h Indexer.h VarNode.h GraphicalModel.h
HorusYap.o: HorusYap.cpp ../../../../include/YapInterface.h \
../../../../include/yap_structs.h ParfactorList.h Parfactor.h \
ProbFormula.h ConstraintTree.h TinySet.h LiftedUtils.h Util.h Horus.h \
BayesNet.h GraphicalModel.h VarNode.h BayesNode.h FactorGraph.h Factor.h \
FoveSolver.h VarElimSolver.h Solver.h BnBpSolver.h FgBpSolver.h \
CbpSolver.h CFactorGraph.h ElimGraph.h
HorusCli.o: HorusCli.cpp BayesNet.h GraphicalModel.h VarNode.h Horus.h \
BayesNode.h FactorGraph.h Factor.h Util.h VarElimSolver.h Solver.h \
BnBpSolver.h FgBpSolver.h CbpSolver.h CFactorGraph.h
xmlParser.o: xmlParser/xmlParser.cpp xmlParser/xmlParser.h

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@ -1,124 +0,0 @@
YAP 6.3.2 (i686-linux): Sex Mar 23 14:21:24 WET 2012
% consulting /home/tiago/yap-6.3/packages/CLPBN/clpbn/bp/benchmarks/city/town_3.yap...
% reconsulting /home/tiago/share/Yap/clpbn.yap...
% reconsulting /home/tiago/share/Yap/atts.yap...
% reconsulting /home/tiago/share/Yap/lists.yap...
% reconsulting /home/tiago/share/Yap/error.pl...
% reconsulted /home/tiago/share/Yap/error.pl in module error, 4 msec 31312 bytes
% reconsulted /home/tiago/share/Yap/lists.yap in module lists, 8 msec 73816 bytes
% reconsulted /home/tiago/share/Yap/atts.yap in module attributes, 8 msec 99072 bytes
% reconsulting /home/tiago/share/Yap/terms.yap...
% reconsulted /home/tiago/share/Yap/terms.yap in module terms, 0 msec 2016 bytes
% reconsulting /home/tiago/share/Yap/clpbn/ve.yap...
% reconsulting /home/tiago/share/Yap/ordsets.yap...
% reconsulted /home/tiago/share/Yap/ordsets.yap in module ordsets, 0 msec 30264 bytes
% reconsulting /home/tiago/share/Yap/clpbn/xbif.yap...
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulting /home/tiago/share/Yap/matrix.yap...
% reconsulted /home/tiago/share/Yap/matrix.yap in module matrix, 0 msec 22232 bytes
% reconsulting /home/tiago/share/Yap/clpbn/matrix_cpt_utils.yap...
% reconsulted /home/tiago/share/Yap/clpbn/matrix_cpt_utils.yap in module clpbn_matrix_utils, 4 msec 39456 bytes
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module xbif, 8 msec 110696 bytes
% reconsulted /home/tiago/share/Yap/clpbn/xbif.yap in module xbif, 8 msec 123296 bytes
% reconsulting /home/tiago/share/Yap/clpbn/graphviz.yap...
% reconsulted /home/tiago/share/Yap/clpbn/graphviz.yap in module clpbn_gviz, 0 msec 10920 bytes
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module clpbn_ve, 4 msec 38888 bytes
% reconsulting /home/tiago/share/Yap/clpbn/utils.yap...
% reconsulted /home/tiago/share/Yap/clpbn/utils.yap in module clpbn_utils, 4 msec 15784 bytes
% reconsulting /home/tiago/share/Yap/clpbn/display.yap...
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module clpbn_display, 4 msec 39392 bytes
% reconsulted /home/tiago/share/Yap/clpbn/display.yap in module clpbn_display, 4 msec 52016 bytes
% reconsulting /home/tiago/share/Yap/clpbn/connected.yap...
% reconsulting /home/tiago/share/Yap/dgraphs.yap...
% reconsulting /home/tiago/share/Yap/rbtrees.yap...
% reconsulted /home/tiago/share/Yap/rbtrees.yap in module rbtrees, 8 msec 130768 bytes
% reconsulting /home/tiago/share/Yap/wdgraphs.yap...
% reconsulting /home/tiago/share/Yap/heaps.yap...
% reconsulted /home/tiago/share/Yap/heaps.yap in module heaps, 0 msec 16696 bytes
% reconsulted /home/tiago/share/Yap/wdgraphs.yap in module wdgraphs, 4 msec 82176 bytes
% reconsulted /home/tiago/share/Yap/dgraphs.yap in module dgraphs, 20 msec 276632 bytes
% reconsulted /home/tiago/share/Yap/clpbn/connected.yap in module clpbn_connected, 24 msec 301216 bytes
% reconsulting /home/tiago/share/Yap/clpbn/aggregates.yap...
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module clpbn_aggregates, 0 msec 39168 bytes
% reconsulted /home/tiago/share/Yap/clpbn/aggregates.yap in module clpbn_aggregates, 4 msec 78560 bytes
% reconsulted /home/tiago/share/Yap/clpbn/ve.yap in module clpbn_ve, 52 msec 689720 bytes
% reconsulting /home/tiago/share/Yap/clpbn/bp.yap...
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module clpbn_bp, 4 msec 39272 bytes
% reconsulting /home/tiago/share/Yap/charsio.yap...
% reconsulted /home/tiago/share/Yap/charsio.yap in module charsio, 0 msec 13088 bytes
% reconsulting /home/tiago/share/Yap/clpbn/horus.yap...
% reconsulted /home/tiago/share/Yap/clpbn/horus.yap in module clpbn_horus, 4 msec 9304 bytes
% reconsulted /home/tiago/share/Yap/clpbn/bp.yap in module clpbn_bp, 8 msec 93888 bytes
% reconsulting /home/tiago/share/Yap/clpbn/fove.yap...
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module clpbn_fove, 4 msec 39136 bytes
% reconsulting /home/tiago/share/Yap/pfl.yap...
ERROR!! (/home/tiago/share/Yap/pfl.yap:31).
EXISTENCE ERROR- procedure set_pfl_flag/2 is undefined, called from context prolog:$system_catch/4
Goal was pfl:set_pfl_flag(use_factors,on)
ERROR!! (/home/tiago/share/Yap/pfl.yap:33).
EXISTENCE ERROR- procedure pfl_not_clpbn/0 is undefined, called from context prolog:$system_catch/4
Goal was pfl:pfl_not_clpbn
% reconsulted /home/tiago/share/Yap/pfl.yap in module pfl, 0 msec 22656 bytes
% reconsulted /home/tiago/share/Yap/clpbn/fove.yap in module clpbn_fove, 8 msec 80616 bytes
% reconsulting /home/tiago/share/Yap/clpbn/jt.yap...
% reconsulting /home/tiago/share/Yap/undgraphs.yap...
% reconsulting /home/tiago/share/Yap/wundgraphs.yap...
% reconsulted /home/tiago/share/Yap/wundgraphs.yap in module wundgraphs, 0 msec 37888 bytes
% reconsulted /home/tiago/share/Yap/undgraphs.yap in module undgraphs, 0 msec 66592 bytes
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module jt, 4 msec 38616 bytes
% reconsulted /home/tiago/share/Yap/clpbn/jt.yap in module jt, 12 msec 182952 bytes
% reconsulting /home/tiago/share/Yap/clpbn/bdd.yap...
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module clpbn_bdd, 4 msec 39384 bytes
ERROR!! (/home/tiago/share/Yap/clpbn/bdd.yap:50).
PERMISSION ERROR- use_module(library(bdd)): cannot read from library(bdd)
% reconsulted /home/tiago/share/Yap/clpbn/bdd.yap in module clpbn_bdd, 12 msec 107616 bytes
% reconsulting /home/tiago/share/Yap/clpbn/bnt.yap...
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module bnt, 4 msec 39240 bytes
% reconsulting /home/tiago/share/Yap/clpbn/discrete_utils.yap...
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module discrete_utils, 4 msec 39104 bytes
% reconsulted /home/tiago/share/Yap/clpbn/discrete_utils.yap in module discrete_utils, 8 msec 59424 bytes
% reconsulting /home/tiago/share/Yap/matlab.yap...
% Warning: (/home/tiago/share/Yap/matlab.yap:31).
% matlab not available
% reconsulted /home/tiago/share/Yap/matlab.yap in module matlab, 0 msec 23616 bytes
% reconsulted /home/tiago/share/Yap/clpbn/bnt.yap in module bnt, 20 msec 181472 bytes
% reconsulting /home/tiago/share/Yap/clpbn/gibbs.yap...
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module clpbn_gibbs, 4 msec 38464 bytes
% reconsulting /home/tiago/share/Yap/clpbn/topsort.yap...
% reconsulted /home/tiago/share/Yap/clpbn/topsort.yap in module topsort, 0 msec 5384 bytes
% reconsulted /home/tiago/share/Yap/clpbn/gibbs.yap in module clpbn_gibbs, 12 msec 117352 bytes
% reconsulting /home/tiago/share/Yap/clpbn/pgrammar.yap...
% reconsulted /home/tiago/share/Yap/clpbn/pgrammar.yap in module clpbn_pgrammar, 0 msec 52936 bytes
% reconsulting /home/tiago/share/Yap/clpbn/graphs.yap...
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module clpbn2graph, 4 msec 42024 bytes
% reconsulted /home/tiago/share/Yap/clpbn/graphs.yap in module clpbn2graph, 4 msec 47160 bytes
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module clpbn, 0 msec 40000 bytes
% reconsulting /home/tiago/share/Yap/clpbn/evidence.yap...
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module clpbn_evidence, 4 msec 38728 bytes
% reconsulted /home/tiago/share/Yap/clpbn/evidence.yap in module clpbn_evidence, 8 msec 60296 bytes
% reconsulting /home/tiago/share/Yap/clpbn/ground_factors.yap...
% reconsulting /home/tiago/share/Yap/bhash.yap...
% reconsulted /home/tiago/share/Yap/bhash.yap in module b_hash, 0 msec 28256 bytes
% reconsulting /home/tiago/share/Yap/clpbn/dists.yap...
% reconsulted /home/tiago/share/Yap/clpbn/dists.yap in module clpbn_ground_factors, 4 msec 38872 bytes
% reconsulted /home/tiago/share/Yap/clpbn/ground_factors.yap in module clpbn_ground_factors, 8 msec 98440 bytes
% reconsulted /home/tiago/share/Yap/clpbn.yap in module clpbn, 168 msec 1942360 bytes
% reconsulting /home/tiago/yap-6.3/packages/CLPBN/clpbn/bp/benchmarks/city/schema.yap...
% reconsulting /home/tiago/yap-6.3/packages/CLPBN/clpbn/bp/benchmarks/city/tables.yap...
% reconsulted /home/tiago/yap-6.3/packages/CLPBN/clpbn/bp/benchmarks/city/tables.yap in module user, 0 msec 3768 bytes
% reconsulted /home/tiago/yap-6.3/packages/CLPBN/clpbn/bp/benchmarks/city/schema.yap in module user, 4 msec 14344 bytes
% consulted /home/tiago/yap-6.3/packages/CLPBN/clpbn/bp/benchmarks/city/town_3.yap in module user, 172 msec 1973368 bytes
yes

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@ -1,230 +0,0 @@
YAP 6.3.2 (x86_64-linux): Qui Mar 29 01:31:18 WEST 2012
MYDDAS version MYDDAS-0.9.1
ERROR!!
PERMISSION ERROR- consult(pos:train): cannot read from train
% consulting /home/tgomes/yap-6.3/packages/CLPBN/examples/School/sch32.yap...
% reconsulting /home/tgomes/share/Yap/clpbn.yap...
% reconsulting /home/tgomes/share/Yap/atts.yap...
% reconsulting /home/tgomes/share/Yap/lists.yap...
% reconsulting /home/tgomes/share/Yap/error.pl...
% reconsulted /home/tgomes/share/Yap/error.pl in module error, 2 msec 53424 bytes
% reconsulted /home/tgomes/share/Yap/lists.yap in module lists, 4 msec 117168 bytes
% reconsulted /home/tgomes/share/Yap/atts.yap in module attributes, 5 msec 163104 bytes
% reconsulting /home/tgomes/share/Yap/terms.yap...
% reconsulted /home/tgomes/share/Yap/terms.yap in module terms, 0 msec 3312 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/ve.yap...
% reconsulting /home/tgomes/share/Yap/ordsets.yap...
% reconsulted /home/tgomes/share/Yap/ordsets.yap in module ordsets, 1 msec 46688 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/xbif.yap...
% reconsulting /home/tgomes/share/Yap/clpbn/dists.yap...
% reconsulting /home/tgomes/share/Yap/matrix.yap...
% reconsulted /home/tgomes/share/Yap/matrix.yap in module matrix, 0 msec 39104 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/matrix_cpt_utils.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/matrix_cpt_utils.yap in module clpbn_matrix_utils, 2 msec 65616 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/dists.yap in module clpbn_dist, 5 msec 189008 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/xbif.yap in module xbif, 5 msec 209440 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/graphviz.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/graphviz.yap in module clpbn_gviz, 0 msec 14912 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/utils.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/utils.yap in module clpbn_utils, 1 msec 27360 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/display.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/display.yap in module clpbn_display, 1 msec 19312 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/connected.yap...
% reconsulting /home/tgomes/share/Yap/dgraphs.yap...
% reconsulting /home/tgomes/share/Yap/rbtrees.yap...
% reconsulted /home/tgomes/share/Yap/rbtrees.yap in module rbtrees, 6 msec 230208 bytes
% reconsulting /home/tgomes/share/Yap/wdgraphs.yap...
% reconsulting /home/tgomes/share/Yap/heaps.yap...
% reconsulted /home/tgomes/share/Yap/heaps.yap in module heaps, 1 msec 26512 bytes
% reconsulted /home/tgomes/share/Yap/wdgraphs.yap in module wdgraphs, 5 msec 141520 bytes
% reconsulted /home/tgomes/share/Yap/dgraphs.yap in module dgraphs, 13 msec 474800 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/connected.yap in module clpbn_connected, 15 msec 510400 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/aggregates.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/aggregates.yap in module clpbn_aggregates, 2 msec 70864 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/ve.yap in module clpbn_ve, 30 msec 969024 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/bp.yap...
% reconsulting /home/tgomes/share/Yap/charsio.yap...
% reconsulted /home/tgomes/share/Yap/charsio.yap in module charsio, 1 msec 20240 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/horus.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/horus.yap in module clpbn_horus, 1 msec 7744 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/bp.yap in module clpbn_bp, 4 msec 59760 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/fove.yap...
% reconsulting /home/tgomes/share/Yap/pfl.yap...
ERROR!! (/home/tgomes/share/Yap/pfl.yap:31).
EXISTENCE ERROR- procedure set_pfl_flag/2 is undefined, called from context prolog:$system_catch/4
Goal was pfl:set_pfl_flag(use_factors,on)
ERROR!! (/home/tgomes/share/Yap/pfl.yap:33).
EXISTENCE ERROR- procedure pfl_not_clpbn/0 is undefined, called from context prolog:$system_catch/4
Goal was pfl:pfl_not_clpbn
% reconsulted /home/tgomes/share/Yap/pfl.yap in module pfl, 2 msec 38176 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/fove.yap in module clpbn_fove, 3 msec 67168 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/jt.yap...
% reconsulting /home/tgomes/share/Yap/undgraphs.yap...
% reconsulting /home/tgomes/share/Yap/wundgraphs.yap...
% reconsulted /home/tgomes/share/Yap/wundgraphs.yap in module wundgraphs, 2 msec 67872 bytes
% reconsulted /home/tgomes/share/Yap/undgraphs.yap in module undgraphs, 4 msec 116624 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/jt.yap in module jt, 10 msec 254144 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/bdd.yap...
% reconsulting /home/tgomes/share/Yap/hacks.yap...
% reconsulted /home/tgomes/share/Yap/hacks.yap in module yap_hacks, 0 msec 8112 bytes
ERROR!! (/home/tgomes/share/Yap/clpbn/bdd.yap:52).
PERMISSION ERROR- use_module(library(bdd)): cannot read from library(bdd)
% reconsulted /home/tgomes/share/Yap/clpbn/bdd.yap in module clpbn_bdd, 6 msec 189952 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/bnt.yap...
% reconsulting /home/tgomes/share/Yap/clpbn/discrete_utils.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/discrete_utils.yap in module discrete_utils, 1 msec 35200 bytes
% reconsulting /home/tgomes/share/Yap/matlab.yap...
% Warning: (/home/tgomes/share/Yap/matlab.yap:31).
% matlab not available
% reconsulted /home/tgomes/share/Yap/matlab.yap in module matlab, 1 msec 42640 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/bnt.yap in module bnt, 6 msec 179408 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/gibbs.yap...
% reconsulting /home/tgomes/share/Yap/clpbn/topsort.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/topsort.yap in module topsort, 0 msec 9328 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/gibbs.yap in module clpbn_gibbs, 4 msec 135264 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/pgrammar.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/pgrammar.yap in module clpbn_pgrammar, 2 msec 90624 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/graphs.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/graphs.yap in module clpbn2graph, 0 msec 15088 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/evidence.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/evidence.yap in module clpbn_evidence, 2 msec 42688 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/ground_factors.yap...
% reconsulting /home/tgomes/share/Yap/bhash.yap...
% reconsulted /home/tgomes/share/Yap/bhash.yap in module b_hash, 1 msec 55600 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/ground_factors.yap in module clpbn_ground_factors, 4 msec 116144 bytes
% reconsulted /home/tgomes/share/Yap/clpbn.yap in module clpbn, 87 msec 2459328 bytes
% reconsulting /home/tgomes/yap-6.3/packages/CLPBN/examples/School/schema.yap...
% reconsulting /home/tgomes/yap-6.3/packages/CLPBN/examples/School/tables.yap...
% reconsulted /home/tgomes/yap-6.3/packages/CLPBN/examples/School/tables.yap in module user, 1 msec 14016 bytes
% reconsulted /home/tgomes/yap-6.3/packages/CLPBN/examples/School/schema.yap in module user, 2 msec 37168 bytes
% reconsulting /home/tgomes/yap-6.3/packages/CLPBN/examples/School/school32_data.yap...
% reconsulted /home/tgomes/yap-6.3/packages/CLPBN/examples/School/school32_data.yap in module user, 14 msec 168240 bytes
% consulted /home/tgomes/yap-6.3/packages/CLPBN/examples/School/sch32.yap in module user, 104 msec 2693456 bytes
yes
% reconsulting /home/tgomes/share/Yap/clpbn/learning/em.yap...
% reconsulting /home/tgomes/share/Yap/clpbn/learning/learn_utils.yap...
% reconsulting /home/tgomes/share/Yap/clpbn/table.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/table.yap in module clpbn_table, 3 msec 106128 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/learning/learn_utils.yap in module clpbn_learn_utils, 5 msec 135168 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/learning/em.yap in module clpbn_em, 7 msec 201712 bytes
yes
yes
% consulting /home/tgomes/yap-6.3/packages/CLPBN/clpbn/bp/benchmarks/school/missing5.yap...
% consulted /home/tgomes/yap-6.3/packages/CLPBN/clpbn/bp/benchmarks/school/missing5.yap in module user, 2 msec 219344 bytes
yes
no
YAP 6.3.2 (x86_64-linux): Qui Mar 29 01:31:18 WEST 2012
MYDDAS version MYDDAS-0.9.1
ERROR!!
PERMISSION ERROR- consult(pos:train): cannot read from train
% consulting /home/tgomes/yap-6.3/packages/CLPBN/examples/School/sch32.yap...
% reconsulting /home/tgomes/share/Yap/clpbn.yap...
% reconsulting /home/tgomes/share/Yap/atts.yap...
% reconsulting /home/tgomes/share/Yap/lists.yap...
% reconsulting /home/tgomes/share/Yap/error.pl...
% reconsulted /home/tgomes/share/Yap/error.pl in module error, 2 msec 53424 bytes
% reconsulted /home/tgomes/share/Yap/lists.yap in module lists, 4 msec 117168 bytes
% reconsulted /home/tgomes/share/Yap/atts.yap in module attributes, 5 msec 163104 bytes
% reconsulting /home/tgomes/share/Yap/terms.yap...
% reconsulted /home/tgomes/share/Yap/terms.yap in module terms, 0 msec 3312 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/ve.yap...
% reconsulting /home/tgomes/share/Yap/ordsets.yap...
% reconsulted /home/tgomes/share/Yap/ordsets.yap in module ordsets, 1 msec 46688 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/xbif.yap...
% reconsulting /home/tgomes/share/Yap/clpbn/dists.yap...
% reconsulting /home/tgomes/share/Yap/matrix.yap...
% reconsulted /home/tgomes/share/Yap/matrix.yap in module matrix, 0 msec 39104 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/matrix_cpt_utils.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/matrix_cpt_utils.yap in module clpbn_matrix_utils, 1 msec 65616 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/dists.yap in module clpbn_dist, 5 msec 189008 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/xbif.yap in module xbif, 5 msec 209440 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/graphviz.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/graphviz.yap in module clpbn_gviz, 0 msec 14912 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/utils.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/utils.yap in module clpbn_utils, 0 msec 27360 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/display.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/display.yap in module clpbn_display, 1 msec 19312 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/connected.yap...
% reconsulting /home/tgomes/share/Yap/dgraphs.yap...
% reconsulting /home/tgomes/share/Yap/rbtrees.yap...
% reconsulted /home/tgomes/share/Yap/rbtrees.yap in module rbtrees, 6 msec 230208 bytes
% reconsulting /home/tgomes/share/Yap/wdgraphs.yap...
% reconsulting /home/tgomes/share/Yap/heaps.yap...
% reconsulted /home/tgomes/share/Yap/heaps.yap in module heaps, 1 msec 26512 bytes
% reconsulted /home/tgomes/share/Yap/wdgraphs.yap in module wdgraphs, 3 msec 141520 bytes
% reconsulted /home/tgomes/share/Yap/dgraphs.yap in module dgraphs, 12 msec 474800 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/connected.yap in module clpbn_connected, 14 msec 510400 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/aggregates.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/aggregates.yap in module clpbn_aggregates, 2 msec 70864 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/ve.yap in module clpbn_ve, 28 msec 969024 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/bp.yap...
% reconsulting /home/tgomes/share/Yap/charsio.yap...
% reconsulted /home/tgomes/share/Yap/charsio.yap in module charsio, 0 msec 20240 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/horus.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/horus.yap in module clpbn_horus, 1 msec 7744 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/bp.yap in module clpbn_bp, 2 msec 59760 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/fove.yap...
% reconsulting /home/tgomes/share/Yap/pfl.yap...
ERROR!! (/home/tgomes/share/Yap/pfl.yap:31).
EXISTENCE ERROR- procedure set_pfl_flag/2 is undefined, called from context prolog:$system_catch/4
Goal was pfl:set_pfl_flag(use_factors,on)
ERROR!! (/home/tgomes/share/Yap/pfl.yap:33).
EXISTENCE ERROR- procedure pfl_not_clpbn/0 is undefined, called from context prolog:$system_catch/4
Goal was pfl:pfl_not_clpbn
% reconsulted /home/tgomes/share/Yap/pfl.yap in module pfl, 1 msec 38176 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/fove.yap in module clpbn_fove, 3 msec 67168 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/jt.yap...
% reconsulting /home/tgomes/share/Yap/undgraphs.yap...
% reconsulting /home/tgomes/share/Yap/wundgraphs.yap...
% reconsulted /home/tgomes/share/Yap/wundgraphs.yap in module wundgraphs, 2 msec 67872 bytes
% reconsulted /home/tgomes/share/Yap/undgraphs.yap in module undgraphs, 3 msec 116624 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/jt.yap in module jt, 9 msec 254144 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/bdd.yap...
% reconsulting /home/tgomes/share/Yap/hacks.yap...
% reconsulted /home/tgomes/share/Yap/hacks.yap in module yap_hacks, 1 msec 8112 bytes
ERROR!! (/home/tgomes/share/Yap/clpbn/bdd.yap:52).
PERMISSION ERROR- use_module(library(bdd)): cannot read from library(bdd)
% reconsulted /home/tgomes/share/Yap/clpbn/bdd.yap in module clpbn_bdd, 5 msec 189952 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/bnt.yap...
% reconsulting /home/tgomes/share/Yap/clpbn/discrete_utils.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/discrete_utils.yap in module discrete_utils, 1 msec 35200 bytes
% reconsulting /home/tgomes/share/Yap/matlab.yap...
% Warning: (/home/tgomes/share/Yap/matlab.yap:31).
% matlab not available
% reconsulted /home/tgomes/share/Yap/matlab.yap in module matlab, 1 msec 42640 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/bnt.yap in module bnt, 8 msec 179408 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/gibbs.yap...
% reconsulting /home/tgomes/share/Yap/clpbn/topsort.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/topsort.yap in module topsort, 0 msec 9328 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/gibbs.yap in module clpbn_gibbs, 6 msec 135264 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/pgrammar.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/pgrammar.yap in module clpbn_pgrammar, 2 msec 90624 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/graphs.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/graphs.yap in module clpbn2graph, 0 msec 15088 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/evidence.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/evidence.yap in module clpbn_evidence, 2 msec 42688 bytes
% reconsulting /home/tgomes/share/Yap/clpbn/ground_factors.yap...
% reconsulting /home/tgomes/share/Yap/bhash.yap...
% reconsulted /home/tgomes/share/Yap/bhash.yap in module b_hash, 2 msec 55600 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/ground_factors.yap in module clpbn_ground_factors, 5 msec 116144 bytes
% reconsulted /home/tgomes/share/Yap/clpbn.yap in module clpbn, 85 msec 2459328 bytes
% reconsulting /home/tgomes/yap-6.3/packages/CLPBN/examples/School/schema.yap...
% reconsulting /home/tgomes/yap-6.3/packages/CLPBN/examples/School/tables.yap...
% reconsulted /home/tgomes/yap-6.3/packages/CLPBN/examples/School/tables.yap in module user, 1 msec 14016 bytes
% reconsulted /home/tgomes/yap-6.3/packages/CLPBN/examples/School/schema.yap in module user, 2 msec 37168 bytes
% reconsulting /home/tgomes/yap-6.3/packages/CLPBN/examples/School/school32_data.yap...
% reconsulted /home/tgomes/yap-6.3/packages/CLPBN/examples/School/school32_data.yap in module user, 14 msec 168240 bytes
% consulted /home/tgomes/yap-6.3/packages/CLPBN/examples/School/sch32.yap in module user, 103 msec 2693456 bytes
yes
% reconsulting /home/tgomes/share/Yap/clpbn/learning/em.yap...
% reconsulting /home/tgomes/share/Yap/clpbn/learning/learn_utils.yap...
% reconsulting /home/tgomes/share/Yap/clpbn/table.yap...
% reconsulted /home/tgomes/share/Yap/clpbn/table.yap in module clpbn_table, 3 msec 106128 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/learning/learn_utils.yap in module clpbn_learn_utils, 6 msec 135168 bytes
% reconsulted /home/tgomes/share/Yap/clpbn/learning/em.yap in module clpbn_em, 10 msec 201712 bytes
yes
yes
% consulting /home/tgomes/yap-6.3/packages/CLPBN/clpbn/bp/benchmarks/school/missing10.yap...
% consulted /home/tgomes/yap-6.3/packages/CLPBN/clpbn/bp/benchmarks/school/missing10.yap in module user, 2 msec 219344 bytes
yes
no

View File

@ -1,5 +0,0 @@
************************************************************************
results for solver fg_bp(seq_fixed)
************************************************************************
real:0:00.17 user:0.13 sys:0.03
real:0:00.16 user:0.14 sys:0.02

View File

@ -1,21 +0,0 @@
************************************************************************
results for solver hve(min_neighbors)
************************************************************************
missing5: Lik = -2093.451, real:0:01.67 user:0.44 sys:0.25
missing10: Lik = -2097.389, real:0:00.90 user:0.66 sys:0.20
missing20: Lik = -2091.625, real:0:14.76 user:13.98 sys:0.54
missing30: Lik = -2112.989, real:0:19.22 user:18.30 sys:0.66
************************************************************************
results for solver fg_bp(seq_fixed)
************************************************************************
missing5: Lik = -2093.451, real:0:00.79 user:0.56 sys:0.22
missing10: Lik = -2097.389, real:0:00.93 user:0.66 sys:0.24
missing20: Lik = -2091.625, real:0:01.49 user:1.26 sys:0.22
missing30: Lik = -2112.989, real:0:01.97 user:1.70 sys:0.24
************************************************************************
results for solver cbp(seq_fixed)
************************************************************************
missing5: Lik = -2093.451, real:0:00.82 user:0.55 sys:0.25
missing10: Lik = -2097.389, real:0:00.98 user:0.73 sys:0.23
missing20: Lik = -2091.625, real:0:01.66 user:1.40 sys:0.24
missing30: Lik = -2112.989, real:0:02.18 user:1.83 sys:0.24

View File

@ -1,32 +0,0 @@
************************************************************************
results for solver hve(min_neighbors)
************************************************************************
missing5: Lik = -2093.451, real:0:00.62 user:0.42 sys:0.19
missing10: Lik = -2097.389, real:0:00.80 user:0.60 sys:0.19
missing20: Lik = -2091.625, real:0:12.75 user:12.43 sys:0.28
missing30: Lik = -2112.989, real:0:16.22 user:15.82 sys:0.36
missing40: Lik = -2079.566, real:0:51.03 user:50.15 sys:0.75
************************************************************************
results for solver bn_bp(seq_fixed)
************************************************************************
missing5: Lik = -2093.451, real:0:01.03 user:0.57 sys:0.22
missing10: Lik = -2097.389, real:0:01.42 user:1.19 sys:0.23
missing20: Lik = -2091.625, real:1:16.10 user:75.79 sys:0.24
missing30: Lik = -2112.989, real:1:57.71 user:117.32 sys:0.30
missing40: Lik = -2079.566, real:6:44.03 user:403.24 sys:0.49
************************************************************************
results for solver fg_bp(seq_fixed)
************************************************************************
missing5: Lik = -2093.451, real:0:00.85 user:0.54 sys:0.28
missing10: Lik = -2097.389, real:0:00.92 user:0.64 sys:0.28
missing20: Lik = -2091.625, real:0:01.33 user:1.05 sys:0.27
missing30: Lik = -2112.989, real:0:01.65 user:1.35 sys:0.29
missing40: Lik = -2079.566, real:0:01.92 user:1.57 sys:0.34
************************************************************************
results for solver cbp(seq_fixed)
************************************************************************
missing5: Lik = -2093.451, real:0:00.98 user:0.62 sys:0.32
missing10: Lik = -2097.389, real:0:01.07 user:0.76 sys:0.31
missing20: Lik = -2091.625, real:0:01.60 user:1.31 sys:0.29
missing30: Lik = -2112.989, real:0:01.99 user:1.67 sys:0.32
missing40: Lik = -2079.566, real:0:02.11 user:1.82 sys:0.29

View File

@ -1,17 +0,0 @@
:- use_module(library(pfl)).
:- set_clpbn_flag(solver,fove).
c1(x1).
c1(x2).
c1(x3).
c2(x2).
c2(x3).
c2(x4).
markov p::[t,f] ; [0.2, 0.4] ; [].
markov q::[t,f] ; [0.2, 0.4] ; [].
markov s::[t,f] , p::[t,f] ; [0.2, 0.4, 0.5, 0.1] ; [].