Tiago Gomes
|
4708685ed4
|
fix bug in Factor::contains
|
2012-06-01 14:03:39 +01:00 |
Vitor Santos Costa
|
71a62307f4
|
CLP(BN) stuff.
|
2012-06-01 13:17:39 +01:00 |
|
Tiago Gomes
|
ecde9649a8
|
fix header guard
|
2012-06-01 12:35:44 +01:00 |
|
Tiago Gomes
|
b5369db214
|
use only solveQuery
|
2012-05-31 23:06:53 +01:00 |
|
Tiago Gomes
|
f91e543d9d
|
workaround c++ bad design: don't allow creating a factor graph from some pointer
|
2012-05-31 22:42:38 +01:00 |
|
Tiago Gomes
|
3f0f41c8a9
|
cleanup
|
2012-05-31 21:24:40 +01:00 |
|
Tiago Gomes
|
e11ed1a226
|
forgot these two
|
2012-05-31 21:24:15 +01:00 |
|
Tiago Gomes
|
22d8876d33
|
add support to (real) lifted belief propagation
|
2012-05-31 21:12:46 +01:00 |
|
Tiago Gomes
|
22780c4559
|
handle empty vectors in TinySet
|
2012-05-31 14:57:53 +01:00 |
|
Tiago Gomes
|
7429a39b48
|
fix a bug on absorving lifted evidence
|
2012-05-31 14:09:50 +01:00 |
|
Tiago Gomes
|
c2297c3f70
|
add lbp flag
|
2012-05-31 12:45:09 +01:00 |
|
Tiago Gomes
|
d00eb05624
|
use bind2nd instead of bind1st
|
2012-05-31 12:19:13 +01:00 |
|
Tiago Gomes
|
6668ee6381
|
add initial skeleton for lifted bp
|
2012-05-30 19:23:41 +01:00 |
|
Tiago Gomes
|
8d14593c3e
|
add an enum for lifted solvers and do some renamings
|
2012-05-30 17:17:39 +01:00 |
|
Tiago Gomes
|
ac38e9e6a6
|
minor improvement
|
2012-05-29 17:19:49 +01:00 |
|
Tiago Gomes
|
651051484b
|
update TODO
|
2012-05-29 17:14:29 +01:00 |
|
Tiago Gomes
|
02395daed3
|
add a sequential elimination heuristic
|
2012-05-29 17:14:01 +01:00 |
|
Tiago Gomes
|
0315cd51a3
|
remove repeated elements in TinySet
|
2012-05-29 17:09:45 +01:00 |
|
Tiago Gomes
|
6feb746412
|
use STL to calculate L1 distance and max norm
|
2012-05-29 13:48:08 +01:00 |
|
Tiago Gomes
|
3ac854b2ff
|
use more Util::sizeExpected
|
2012-05-28 21:27:52 +01:00 |
|
Tiago Gomes
|
54ae29ae02
|
replace Util::add and Util::multiply by Util::apply_n_times
|
2012-05-28 21:09:56 +01:00 |
|
Tiago Gomes
|
f489a59194
|
use std::accumulate to calc the msg size
|
2012-05-28 20:59:39 +01:00 |
|
Tiago Gomes
|
57e32267fe
|
remove unecessary code
|
2012-05-28 19:47:20 +01:00 |
|
Tiago Gomes
|
62283f353c
|
some renamings
|
2012-05-28 19:41:24 +01:00 |
|
Tiago Gomes
|
64b53e8180
|
minor improvements
|
2012-05-28 19:10:29 +01:00 |
|
Tiago Gomes
|
004e6c0c5f
|
minor improvements
|
2012-05-28 18:26:15 +01:00 |
|
Tiago Gomes
|
0cee50496e
|
fix compilation in older gcc
|
2012-05-28 17:57:45 +01:00 |
|
Tiago Gomes
|
d5c2e6833d
|
use convenient function
|
2012-05-28 17:43:48 +01:00 |
|
Tiago Gomes
|
0ad8f5fb4a
|
remove whitespace
|
2012-05-28 17:01:07 +01:00 |
|
Tiago Gomes
|
149f3dab26
|
fix a bug in exporting to uai format
|
2012-05-28 17:00:46 +01:00 |
|
Tiago Gomes
|
3ee176c65b
|
fix header guard
|
2012-05-28 16:59:41 +01:00 |
|
Tiago Gomes
|
f3ca7b2dfc
|
add elementsToString and move things around a bit
|
2012-05-28 16:57:45 +01:00 |
|
Tiago Gomes
|
1352a526c3
|
refactor the way we export to libDAI
|
2012-05-28 14:42:20 +01:00 |
|
Tiago Gomes
|
250d122fc8
|
prefix is better than postfix
|
2012-05-28 14:12:18 +01:00 |
|
Tiago Gomes
|
a9c369aac1
|
size_t invasion, part II
|
2012-05-28 14:01:05 +01:00 |
|
Tiago Gomes
|
4a02997484
|
be consistent: s/copy/backup
|
2012-05-28 12:34:39 +01:00 |
|
Tiago Gomes
|
3986012e56
|
rename CutIndexer to MapIndexer
|
2012-05-28 12:32:15 +01:00 |
|
Tiago Gomes
|
3290834dfe
|
be consistent with other functions
|
2012-05-28 12:24:10 +01:00 |
|
Tiago Gomes
|
fb9bb5c8b5
|
remove unused method
|
2012-05-28 12:18:39 +01:00 |
|
Tiago Gomes
|
6034f7a264
|
refactor the function to reorder arguments
|
2012-05-28 12:17:47 +01:00 |
|
Tiago Gomes
|
1239832c21
|
refactor the way we calculate the product of two factors
|
2012-05-26 20:58:56 +01:00 |
|
Tiago Gomes
|
bc2da47804
|
add a new handy constructor to CutIndexer class
|
2012-05-26 20:56:41 +01:00 |
|
Tiago Gomes
|
918666d7f6
|
add a randomize function
|
2012-05-26 20:44:39 +01:00 |
|
Tiago Gomes
|
c1bd230e61
|
small improvement
|
2012-05-25 21:26:40 +01:00 |
|
Tiago Gomes
|
4b2ffee015
|
minor renaming
|
2012-05-25 21:22:48 +01:00 |
|
Tiago Gomes
|
2efca0c85a
|
refactor indexer classes and receive te ranges as a constant reference
|
2012-05-25 21:16:08 +01:00 |
|
Tiago Gomes
|
5ff161b10f
|
refactor functions for summing out
|
2012-05-25 20:15:05 +01:00 |
|
Tiago Gomes
|
df8a3c5fdc
|
fix a recent bug in StatesIndexer.h
|
2012-05-25 14:36:52 +01:00 |
|
Tiago Gomes
|
a56bccf5e5
|
delete unused method
|
2012-05-24 23:39:38 +01:00 |
|
Tiago Gomes
|
18d4777d9a
|
use PrvGroup
|
2012-05-24 23:38:44 +01:00 |
|
Tiago Gomes
|
af6601837c
|
size_t invasion
|
2012-05-24 22:55:20 +01:00 |
|
Tiago Gomes
|
5124098b6c
|
delete unused code
|
2012-05-24 16:21:41 +01:00 |
|
Tiago Gomes
|
acc5ab056a
|
some refactorings
|
2012-05-24 16:14:13 +01:00 |
|
Tiago Gomes
|
444eaacc63
|
add operators to manipulate vectors of parameters
|
2012-05-24 14:55:30 +01:00 |
|
Tiago Gomes
|
6cb718942a
|
some renamings
|
2012-05-23 21:23:03 +01:00 |
|
Tiago Gomes
|
d91e91b97e
|
prefix calls to c++ functions with cpp_
|
2012-05-23 20:34:57 +01:00 |
|
Tiago Gomes
|
2b896aecb4
|
add examples to the Makefile
|
2012-05-23 19:59:40 +01:00 |
|
Tiago Gomes
|
9f236dccdd
|
rename bp.yap and fove.yap
|
2012-05-23 19:15:23 +01:00 |
|
Tiago Gomes
|
cf929b6f13
|
Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3
|
2012-05-23 17:59:26 +01:00 |
|
Tiago Gomes
|
c04082dc2e
|
move benchmarks one level up
|
2012-05-23 17:27:21 +01:00 |
|
Tiago Gomes
|
3890aafc1a
|
update examples
|
2012-05-23 17:17:50 +01:00 |
|
Tiago Gomes
|
bdef49bb20
|
remove city old example
|
2012-05-23 15:57:00 +01:00 |
|
Tiago Gomes
|
efec94adff
|
remove two unnecessary files
|
2012-05-23 15:55:39 +01:00 |
|
Tiago Gomes
|
584e363aa1
|
move graphical model examples
|
2012-05-23 15:48:03 +01:00 |
|
Tiago Gomes
|
5b38891c21
|
third try ...
|
2012-05-23 14:58:26 +01:00 |
|
Tiago Gomes
|
6c77afb3ae
|
ok, second try
|
2012-05-23 14:56:01 +01:00 |
|
Tiago Gomes
|
a4d181eb97
|
update benchmarks
|
2012-05-23 12:40:34 +01:00 |
|
Tiago Gomes
|
7c3e4ed3ab
|
improve log information
|
2012-05-23 12:26:14 +01:00 |
|
Vitor Santos Costa
|
9e3d16022a
|
fix YAP_AttOfVar
beautify get atts
|
2012-05-21 17:24:40 +01:00 |
|
Tiago Gomes
|
16cb48fea4
|
decrease the time required to find an elimination order
|
2012-05-17 17:29:31 +01:00 |
|
Vítor Santos Costa
|
d68ef3f5a1
|
fix empty tries.
|
2012-05-17 09:56:49 +01:00 |
|
Tiago Gomes
|
cf9a7f1413
|
show the maximum memory used in the benchmarks
|
2012-05-16 12:31:58 +01:00 |
|
Tiago Gomes
|
5934d9efe9
|
update TODO
|
2012-05-16 00:44:59 +01:00 |
|
Tiago Gomes
|
23b180b6f0
|
merge TinySet and SortedVector classes
|
2012-05-16 00:41:01 +01:00 |
|
Tiago Gomes
|
354071c261
|
update scripts
|
2012-05-15 20:14:13 +01:00 |
|
Tiago Gomes
|
f7ba86d3ed
|
kill Util::abort, s/vectorIndex/indexOf and s/isCarteesianProduct/isCartesianProduct
|
2012-05-15 19:41:14 +01:00 |
|
Tiago Gomes
|
db0d2c9772
|
refactor and increase the scope of parfactor multiplication
|
2012-05-15 19:05:39 +01:00 |
|
Tiago Gomes
|
f4bca3ceea
|
factor overflow will not happen with bp
|
2012-05-15 19:02:40 +01:00 |
|
Tiago Gomes
|
7ec4887e77
|
refactor printing of a parfactor
|
2012-05-15 16:57:50 +01:00 |
|
Tiago Gomes
|
346b70145f
|
improvements on shattering
|
2012-05-15 16:52:21 +01:00 |
|
Tiago Gomes
|
90e139f8f3
|
refactor ProbFormula comparation operator
|
2012-05-15 16:49:34 +01:00 |
|
Tiago Gomes
|
03f9df7dc3
|
fix a bug when checking of a set of log vars form a cartesian product
|
2012-05-15 16:46:21 +01:00 |
|
Tiago Gomes
|
1380adcfb5
|
support getting tuples of repeated log vars
|
2012-05-15 16:45:24 +01:00 |
|
Tiago Gomes
|
2061eefda2
|
add a way to copy a log var
|
2012-05-15 16:43:32 +01:00 |
Vitor Santos Costa
|
6c36a8ccd3
|
make it easier for outside packages to link with YAP innards.
|
2012-05-14 15:06:18 +01:00 |
|
Tiago Gomes
|
4ade4945a0
|
improve Util::abort
|
2012-05-07 17:52:47 +01:00 |
|
Tiago Gomes
|
aeb07d43a7
|
add two more utility functions
|
2012-05-07 17:48:15 +01:00 |
|
Tiago Gomes
|
9d5801ef7f
|
ony summout a group of rand vars if they not appear in another position on the parfactor
|
2012-05-05 23:11:32 +01:00 |
|
Tiago Gomes
|
8e75ef3073
|
shatter parfactors also against themselves
|
2012-05-05 21:06:27 +01:00 |
|
Tiago Gomes
|
660e15e2ac
|
update the overflow check in factors, still needs more work tbd
|
2012-05-04 14:28:07 +01:00 |
|
Tiago Gomes
|
0e01a51929
|
remove commented code and fix a warning
|
2012-05-04 14:10:00 +01:00 |
|
Tiago Gomes
|
35d0804f9a
|
update TODO
|
2012-05-03 13:15:33 +01:00 |
|
Tiago Gomes
|
10ac7720f7
|
update smokers examples
|
2012-05-03 11:38:49 +01:00 |
|
Tiago Gomes
|
2bef3f6866
|
minor updates
|
2012-05-03 00:56:19 +01:00 |
|
Vítor Santos Costa
|
9b0b6ec649
|
fix stop_low_level_trace.
P Moura request for (?).
|
2012-05-02 10:09:26 +01:00 |
|
Tiago Gomes
|
92d8c7dcbe
|
add more asserts
|
2012-04-30 17:49:07 +01:00 |
|
Tiago Gomes
|
ad50166bd0
|
fix bug in benchmarks script
|
2012-04-30 16:26:33 +01:00 |
|
Tiago Gomes
|
9971736a45
|
kill DEBUG constant, its not used any more
|
2012-04-30 14:50:14 +01:00 |
|
Tiago Gomes
|
7cf8c68e15
|
fix error message
|
2012-04-30 14:12:00 +01:00 |
|
Tiago Gomes
|
d6e11ca84d
|
delete order vars flag
|
2012-04-30 13:02:53 +01:00 |
|
Tiago Gomes
|
fa8ff6d5b6
|
abort if the factor will become to bigger
|
2012-04-30 12:48:30 +01:00 |
|
Tiago Gomes
|
85fc4ae50a
|
add missing files
|
2012-04-30 11:59:59 +01:00 |
|
Tiago Gomes
|
a90bfb7a86
|
update benchmarks
|
2012-04-30 11:24:04 +01:00 |
|
Tiago Gomes
|
2fa06da3c9
|
disable bayes ball for now
|
2012-04-30 11:20:02 +01:00 |
|
Tiago Gomes
|
185cbe9c73
|
update examples
|
2012-04-30 11:16:11 +01:00 |
|
Tiago Gomes
|
56475cacbc
|
revamp debugging plataform
|
2012-04-29 20:07:09 +01:00 |
|
Tiago Gomes
|
d86e2c8386
|
don't raise counting log vars before multiplication
|
2012-04-28 01:10:04 +01:00 |
|
Tiago Gomes
|
1173b4c25b
|
when expanding a counting formula, check if the expanded log vars are still counting log vars
|
2012-04-28 01:01:23 +01:00 |
|
Tiago Gomes
|
52f4aa0340
|
sort the parfactors by their parameters when printing
|
2012-04-27 19:10:22 +01:00 |
|
Vítor Santos Costa
|
067d6d3f4f
|
fix problog experiment.
|
2012-04-27 16:30:02 +01:00 |
|
Vítor Santos Costa
|
5ee39c6f08
|
back to original version.
|
2012-04-27 16:20:40 +01:00 |
|
Vítor Santos Costa
|
6bb4db125d
|
fix names.
|
2012-04-27 15:33:32 +01:00 |
|
Vítor Santos Costa
|
60184e230d
|
new lbdd stuff.
|
2012-04-27 15:32:57 +01:00 |
|
Vítor Santos Costa
|
ceb0c1f5ac
|
new support file.
|
2012-04-27 15:32:17 +01:00 |
|
Vítor Santos Costa
|
823066f9da
|
use library for learning.
|
2012-04-27 15:30:39 +01:00 |
|
Vítor Santos Costa
|
fd4bf21ece
|
fix file names.
|
2012-04-27 15:26:44 +01:00 |
|
Tiago Gomes
|
20fc2c8dd1
|
add debug information to variable elimination
|
2012-04-27 14:48:48 +01:00 |
|
Tiago Gomes
|
9e1a649262
|
raising the paramaters to some power should happen after summing out, not before
|
2012-04-27 14:47:30 +01:00 |
|
Tiago Gomes
|
7599ccd5a1
|
don't print the paramaters if they are more than 32
|
2012-04-27 01:19:28 +01:00 |
|
Tiago Gomes
|
af063dcda8
|
be more precise when calculating the cost of grounding a log var in a formula
|
2012-04-27 01:18:54 +01:00 |
|
Tiago Gomes
|
995a11be83
|
improvements in the way we align logical variables
|
2012-04-26 18:00:06 +01:00 |
|
Vítor Santos Costa
|
fd755f0b7e
|
allow ProbLog to use lbdd.
|
2012-04-26 13:52:09 +01:00 |
|
Tiago Gomes
|
cc09e77707
|
remove unnecessary variable
|
2012-04-26 00:58:06 +01:00 |
|
Tiago Gomes
|
689244a0d8
|
improve cbp by supporting factors connected to a single var two or more times
|
2012-04-26 00:54:06 +01:00 |
|
Tiago Gomes
|
ad24a360ce
|
Add a way to summout a dimension given a index instead of a variable id.
This is required for counting belief propagation.
|
2012-04-25 22:59:01 +01:00 |
|
Tiago Gomes
|
fc362fe123
|
reorder the parameters instead of reordering variables
|
2012-04-23 22:57:04 +01:00 |
|
Tiago Gomes
|
0ebd6d6e06
|
improve constructor of VarNode
|
2012-04-23 22:40:36 +01:00 |
|
Tiago Gomes
|
3397f694fe
|
sort the variable ids when printing all posterioris
|
2012-04-23 22:12:04 +01:00 |
Vitor Santos Costa
|
f24bf2e2cd
|
full school
|
2012-04-23 07:13:58 -05:00 |
|
Vitor Santos Costa
|
32a905bc8b
|
ddnnf support
|
2012-04-23 07:13:25 -05:00 |
|
Vitor Santos Costa
|
040c1c7fa7
|
more ddnnf stuff
|
2012-04-23 07:13:01 -05:00 |
|
Tiago Gomes
|
d90fcd532b
|
minor update
|
2012-04-21 17:21:54 +01:00 |
|
Tiago Gomes
|
8c689665a0
|
support setting flags in horus cli and fix a bug when ordering the variables
|
2012-04-21 17:14:19 +01:00 |
|
Vitor Santos Costa
|
22f702f8e4
|
ddnnfs.
|
2012-04-20 16:43:30 -05:00 |
|
Vitor Santos Costa
|
220f7e6efc
|
support mtbdds.
|
2012-04-20 16:42:59 -05:00 |
|
Tiago Gomes
|
085ebe1e96
|
check for overflows when performing expansion
case the factor size after expansion be bigger than an unsigned integer, abort the program
|
2012-04-20 17:16:10 +01:00 |
|
Tiago Gomes
|
0ffa409a80
|
fix a bug when expanding potential
|
2012-04-20 14:50:14 +01:00 |
|
Vitor Santos Costa
|
178ad27db8
|
better understanding of ddnnf.
|
2012-04-20 07:07:19 -05:00 |
|
Tiago Gomes
|
09697b8461
|
heuristic to improve results with fove
|
2012-04-19 18:37:15 +01:00 |
|
Tiago Gomes
|
2b7da4bc23
|
refactor the way we calculate the grounding cost
|
2012-04-19 17:59:45 +01:00 |
|
Tiago Gomes
|
661ce08961
|
check if the factor is not zero when choosing the elimination order
|
2012-04-19 12:08:27 +01:00 |
|
Tiago Gomes
|
cd1e157019
|
sort the colors in the signature receveied from a factor (add std namespace)
|
2012-04-18 19:29:43 +01:00 |
|
Tiago Gomes
|
7c100c96bc
|
sort the colors in the signature receveied from a factor
|
2012-04-18 19:29:11 +01:00 |
|
Tiago Gomes
|
862e90a36b
|
fix bug in joining constraint trees
|
2012-04-18 18:14:15 +01:00 |
|
Tiago Gomes
|
61ee95d92a
|
use logarithms to calculate the cost of each fove operator
|
2012-04-18 16:40:12 +01:00 |
|
Tiago Gomes
|
406276b62b
|
add missing scripts
|
2012-04-18 13:53:34 +01:00 |
|
Tiago Gomes
|
a7f57bea99
|
several optimizations on ConstraintTree
|
2012-04-18 03:05:01 +01:00 |
|
Tiago Gomes
|
cd720497f8
|
update groups when shattering
|
2012-04-18 03:04:06 +01:00 |
|
Tiago Gomes
|
bb5d02dbc0
|
minor updates
|
2012-04-18 03:03:29 +01:00 |
|
Tiago Gomes
|
dacf6b4e57
|
update examples
|
2012-04-18 02:57:24 +01:00 |