Commit Graph

1464 Commits

Author SHA1 Message Date
Vitor Santos Costa 149ef50865 new version for jpl 2013-10-30 10:56:01 +00:00
Vítor Santos Costa d7c13b53d8 new version 2013-10-30 10:00:41 +00:00
Vítor Santos Costa ddf624d351 new swi code 2013-10-30 09:57:59 +00:00
Vítor Santos Costa 2669240c4f debug memory allocations 2013-10-17 00:44:24 +01:00
Vítor Santos Costa bd541bc57f eliminate leak and fix memory tracking 2013-10-16 17:33:49 +01:00
Vítor Santos Costa 5ad10a1057 profiling 2013-10-16 16:19:03 +01:00
Vítor Santos Costa 94cb9b7563 allow debugging of memory allocation 2013-10-16 14:52:54 +01:00
Vítor Santos Costa b50305a100 fix fix 2013-10-16 11:24:23 +01:00
Vítor Santos Costa 3fa1f856f6 fix alaises in cuda 2013-10-16 11:15:26 +01:00
Vítor Santos Costa a01b319032 fix cuda multijoin (Carlos) 2013-10-16 09:52:41 +01:00
Vítor Santos Costa 691e977a68 cuda fixes by Carlos and other diverse (fact init, configure). 2013-10-12 12:46:01 +01:00
Vítor Santos Costa 0dc78f106b more cuda checking 2013-10-12 01:11:21 +01:00
Vítor Santos Costa d02842c9ff missing file 2013-10-09 14:59:57 +01:00
Vitor Santos Costa e41851e9d9 cuda 2013-10-09 14:59:03 +01:00
Vítor Santos Costa a165d3e4c2 missing heder 2013-10-09 14:41:53 +01:00
Vítor Santos Costa ffd9bb7a19 missing headers 2013-10-09 13:33:10 +01:00
Vítor Santos Costa f6bc5ab918 more fixes; get coverage quickly 2013-10-09 11:23:45 +01:00
Vítor Santos Costa 6ec98fbcbd make safe for overflow 2013-10-08 13:05:08 +01:00
Vítor Santos Costa c757e51cb0 fixes, small improvements in functionality 2013-10-08 12:46:06 +01:00
Vítor Santos Costa 490b7cd40a small fixes 2013-10-07 18:34:29 +01:00
Vítor Santos Costa fbf6648433 more CUDA fixes 2013-10-07 13:48:19 +01:00
Vítor Santos Costa 1593ee4918 fix interface 2013-10-07 12:38:08 +01:00
Vítor Santos Costa 9800753a1b learn from true by default 2013-10-07 12:21:39 +01:00
Vítor Santos Costa 726d7ca1cc cuda package from Carlos 2013-10-07 12:20:00 +01:00
Vitor Santos Costa 74a6a79960 interface to cuda datalog package 2013-10-04 14:42:18 +01:00
Vitor Santos Costa 43163a190f Atom Translations and CUDA stub 2013-10-04 13:22:00 +01:00
Vitor Santos Costa 1c9167a6c5 small fixes 2013-10-03 11:28:09 +01:00
Vitor Santos Costa 448e2c88e1 document BDD package 2013-09-30 15:45:01 +01:00
Fabrizio Riguzzi 3659f9036c testing output 2013-09-17 14:10:08 +02:00
Fabrizio Riguzzi faf7726452 test program 2013-09-17 13:04:22 +02:00
Fabrizio Riguzzi 700cd2d9dc CLL->Score 2013-09-09 12:41:42 +02:00
Fabrizio Riguzzi 52caac6548 aucpr as a score 2013-09-08 22:11:11 +02:00
Fabrizio Riguzzi b00a5bf7fc em/8 returns the list of updated probabilities of examples 2013-09-08 17:46:36 +02:00
Fabrizio Riguzzi cbf31fcd50 fixed test predicates 2013-09-08 16:06:18 +02:00
Fabrizio Riguzzi b06e1f8bb0 var depth 2013-09-04 21:34:04 +02:00
Fabrizio Riguzzi c671d8aa29 slipcover manual 2013-09-04 21:12:09 +02:00
Fabrizio Riguzzi 842b7f25ab Merge branch 'master' of git@git.dcc.fc.up.pt:yap-6.3 2013-09-04 19:11:28 +02:00
Fabrizio Riguzzi 1f3f9bfb1f inference_sl.pl equal to slipcase 2013-09-04 19:10:31 +02:00
Fabrizio Riguzzi d53857db21 dos2unix inference_sl.pl 2013-09-04 19:09:36 +02:00
Fabrizio Riguzzi cb304e781c slipcover 2013-09-04 18:58:00 +02:00
Vitor Santos Costa 24de22eeb5 MLN generative learning 2013-07-29 17:56:32 -05:00
Vitor Santos Costa bfb4cef8f9 fixes 2013-07-29 17:55:51 -05:00
Vitor Santos Costa 3bb50ce3af handle possible stack expansion or gc 2013-07-25 10:21:17 -05:00
Vitor Santos Costa 4245a04ed0 Merge branch 'master' of ssh://git.dcc.fc.up.pt/yap-6.3 2013-07-16 10:00:51 -05:00
Fabrizio Riguzzi a405ee4bb0 update manual 2013-07-16 15:57:18 +02:00
Vítor Santos Costa 5e80c3ca86 learning 2013-07-16 08:00:16 -05:00
Fabrizio Riguzzi 2e309201ab slipcase examples 2013-07-16 13:55:22 +02:00
Fabrizio Riguzzi dff6925a66 remved unnecessary gloabl vars from bddem.c 2013-07-16 12:43:50 +02:00
Fabrizio Riguzzi d87bb830cd simplecudd link 2013-07-12 15:03:37 +02:00
Fabrizio Riguzzi 69b1f51a4e fixed hrefs in cplint manual 2013-07-12 14:59:20 +02:00
Vitor Santos Costa ddee3df5f8 fix order 2013-06-20 18:09:30 -05:00
Vitor Santos Costa cc73f426d9 MLN stuff 2013-06-19 21:38:43 -05:00
Vitor Santos Costa 24714dbd01 small fixes to l-bfgs 2013-06-19 21:36:18 -05:00
Vítor Santos Costa f4ef6702e1 upgrade version 2013-06-19 21:34:30 -05:00
Vitor Santos Costa 7e1f3009e6 Bernd Gutmann's lbfgs interface 2013-06-13 17:57:55 -05:00
Vitor Santos Costa f1cbc7f3be improved mln stuff 2013-06-07 18:22:42 -05:00
Vitor Santos Costa 23a787bcb3 mlns in PFL 2013-06-06 19:22:22 -05:00
Vitor Santos Costa 6b31d08633 mlns in PFL 2013-06-06 19:18:46 -05:00
Vítor Santos Costa ea3f25c378 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-04-16 21:26:41 -05:00
Vitor Santos Costa cb08a542e2 get rid of comments 2013-04-16 21:14:05 +01:00
Vitor Santos Costa 1c9cc469d5 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-04-16 21:11:51 +01:00
Tiago Gomes 9e57b32431 Fix compilation with older versions of GCC 2013-04-16 21:07:03 +01:00
Vítor Santos Costa e5d5352268 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-04-16 07:53:01 -05:00
Vitor Santos Costa 78410ade1a ensure evidence does not go away, make sure YAP compiles 2013-04-15 19:12:53 -05:00
Tiago Gomes 9e9ad24c90 Small updates to latex docs 2013-04-13 12:43:52 +01:00
Tiago Gomes 761406fa46 Small updates to html docs 2013-04-13 12:33:48 +01:00
Tiago Gomes 745a034d43 Reduce the size of the section labels 2013-04-13 00:49:59 +01:00
Tiago Gomes cb6715664b Create a HTML version of the manual 2013-04-12 23:49:12 +01:00
Tiago Gomes 3405a8895b Small updates to manual 2013-04-12 23:48:25 +01:00
Tiago Gomes fc2530fbe2 It appears that 'make install' on top level calls 'make all' on the horus makefile 2013-04-11 23:16:51 +01:00
Tiago Gomes 7ecfb999d5 Style change 2013-04-11 23:06:13 +01:00
Tiago Gomes de6d7981fb Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-04-11 22:28:41 +01:00
Vítor Santos Costa 23d2f7b8e5 more cleanups. 2013-04-07 10:40:42 -05:00
Vítor Santos Costa 4a95575fe1 should always lookup who generates the parameters (not supported in learning). 2013-04-07 09:51:20 -05:00
Vítor Santos Costa 30cc02e4ee Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-04-07 08:18:54 -05:00
Vítor Santos Costa 4ab4f1cab1 allow integer parameters. 2013-04-07 08:18:13 -05:00
Vitor Santos Costa 12799589a8 thread fixes 2013-04-07 00:00:41 +01:00
Tiago Gomes b13a8b73a1 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2013-04-04 16:20:18 +01:00
Tiago Gomes a2e54a235a Factor: improve factor multiplication
Pass the argument as reference-to-const and also allow chaining of multiplications.
2013-03-21 21:49:12 +00:00
Tiago Gomes 6da2580c8f Fix c550139c8b 2013-03-21 21:43:27 +00:00
Tiago Gomes e2ca97c8de Factor: use the default copy constructor 2013-03-21 21:20:28 +00:00
Tiago Gomes 389daab83f Oops 2013-03-21 19:29:24 +00:00
Tiago Gomes da88ffcc78 Watch out for undefined behaviour. 2013-03-18 16:18:47 +00:00
Tiago Gomes c550139c8b Add more assertations to Factor class.
SumOutFirstVariable and SumOutLastVariable will only are correctly defined if the variable is binary.
2013-03-18 15:57:10 +00:00
Tiago Gomes 4ca17b9e9b Turn off debug by default 2013-03-18 15:08:06 +00:00
Tiago Gomes acf83dd0a1 Add some unit tests 2013-03-18 14:42:54 +00:00
Tiago Gomes 403695a7ba Ouch! We were deleting the same links twice 2013-03-18 12:56:36 +00:00
Tiago Gomes 07dba92406 Add a more complex example to be used by unit tests 2013-03-18 11:33:27 +00:00
Tiago Gomes bc04d28092 Use a static method to create a FactorGraph 2013-03-14 16:57:34 +00:00
Tiago Gomes 2ef1651c6a Add more 2 digits of precision 2013-03-14 16:55:20 +00:00
Tiago Gomes b5d72f751e We need to reverse the ranges too 2013-03-13 23:22:38 +00:00
Tiago Gomes d3663d9370 Forgot to call exit 2013-03-13 22:37:04 +00:00
Tiago Gomes 23469e6f94 Initial infrastructure to support CppUnit 2013-03-13 14:47:14 +00:00
Tiago Gomes 5e5feb5674 Improve Makefile 2013-03-12 21:11:43 +00:00
Vítor Santos Costa 7f910c694d fix paths 2013-03-10 15:21:42 -05:00
Vitor Santos Costa d0858c0d0c remove debugging 2013-03-10 17:24:47 +00:00
Vitor Santos Costa 6397cc9ff7 merge 2013-03-10 17:17:58 +00:00
Vitor Santos Costa e7146c9a46 new version, thread only. 2013-03-10 17:13:09 +00:00
Vitor Santos Costa b0b74fd0f8 update 2013-03-10 15:49:37 +00:00
Vitor Santos Costa f62ea7686a fixes and update 2013-03-10 15:44:23 +00:00
Tiago Gomes 21c401c0dd Move CTNode class to sourcef file 2013-03-09 19:41:17 +00:00
Tiago Gomes 2da7249247 Trivial 2013-03-09 17:14:00 +00:00
Tiago Gomes a300b27764 BeliefProp: move some members to private section 2013-03-09 16:46:42 +00:00
Tiago Gomes 95539226ea Kill SPNodeInfo class 2013-03-09 16:41:53 +00:00
Tiago Gomes d563fce952 Var: replace struct by a pair 2013-03-09 16:18:13 +00:00
Tiago Gomes 532654baba Use enum class instead of old enum.
As we are relying on c++11x for other stuff too.
2013-03-09 15:39:39 +00:00
Vitor Santos Costa a5000dab32 change SWI stuff to swi directory. 2013-03-05 15:50:38 -06:00
Tiago Gomes 7193d2238d Move template definitions to source file and use explicite template instantiation. 2013-03-04 17:58:32 +00:00
Tiago Gomes 063f3ff6e3 Forgot to add these two in the previous commit 2013-03-04 17:57:56 +00:00
Tiago Gomes 93fa793683 Separate TFactor and Factor classes.
Rename TFactor to GenericFactor. GenericFactor.cpp is empty for now.
2013-03-04 15:47:47 +00:00
Tiago Gomes 98efd54da7 Remove unused member function 2013-03-04 15:10:51 +00:00
Vitor Santos Costa acf565d91b new version. 2013-03-03 08:54:09 -06:00
Tiago Gomes 902624f557 f(void) vs f()
"In fact, the f(void) style has been called an "abomination" by Bjarne Stroustrup, the creator of C++, Dennis Ritchie, the co-creator of C, and Doug McIlroy, head of the research department where Unix was born."
2013-02-28 19:45:37 +00:00
Vitor Santos Costa b49e9b908b gradient is more complex to compute 2013-02-26 09:39:56 -06:00
Vitor Santos Costa 59d97f83b4 handle negation in tries and add debugging hooks 2013-02-26 09:39:18 -06:00
Tiago Gomes c8b639f495 Define sortByParams as a local class 2013-02-22 12:35:14 +00:00
Tiago Gomes 0991a84793 Move sortByParams to source file 2013-02-21 00:13:11 +00:00
Tiago Gomes 59c6f5c243 DISALLOW_COPY_AND_ASSIGN should be in the end 2013-02-21 00:06:34 +00:00
Tiago Gomes f0572e3cfb Move BpLink to inside of BeliefProp 2013-02-20 23:59:03 +00:00
Tiago Gomes 6b0e125e3b Move MsgSchedule enum to inside class BeliefProp.
Move also SPNodeInfo to inside BeliefProp. Improve also some using of enums.
2013-02-20 23:34:03 +00:00
Tiago Gomes ce8152d7a0 Add a comment explaining why we are inlining functions with loops in ElimGraph 2013-02-20 23:08:12 +00:00
Vítor Santos Costa 6f6f578578 fix not handling 2013-02-20 13:10:20 -06:00
Tiago Gomes 1d54a78601 BayesBall: improve encapsulation 2013-02-20 14:13:37 +00:00
Tiago Gomes 9a68d95c18 Turn EGNode to be a nested class inside ElimGraph 2013-02-20 13:49:01 +00:00
Tiago Gomes 8ca379c74a Move ElimHeuristic enum to inside of ElimGraph class 2013-02-20 12:52:55 +00:00
Tiago Gomes 8de22f4f0b Counting Bp: move internal classes to source file 2013-02-20 12:42:05 +00:00
Tiago Gomes 8c2468c28b Improve encapsulation in HorusYap and perform other small refactorings 2013-02-20 11:52:42 +00:00
Tiago Gomes 77dfe50acb LiftedVe: move internal classes to source file 2013-02-20 00:21:01 +00:00
Tiago Gomes 7edfe44576 WeightedBp: remove unnecessary include 2013-02-20 00:13:15 +00:00
Tiago Gomes 74a9eda09d HorusCli: put internal functions in an anonymous namespace 2013-02-20 00:05:45 +00:00
Tiago Gomes e3439af0a0 LiftedKc: improve header include 2013-02-19 23:59:05 +00:00
Tiago Gomes e434e87cc8 LiftedKc: remove unnecessary data members 2013-02-19 23:57:22 +00:00
Tiago Gomes c9543514c5 LiftedKc: move some internal classes to source file 2013-02-19 23:47:46 +00:00
Vítor Santos Costa 638bee41cd fix compilation issues & up-to-date to recente SWI. 2013-02-17 07:32:55 -06:00
Tiago Gomes b6ee7b4460 Don't extend explicity the life time of returned temporaries.
That sort of optimization is compiler's work.
2013-02-16 18:58:22 +00:00
Tiago Gomes ea49b517e8 Some renamings in ElimGraph 2013-02-16 17:03:12 +00:00
Tiago Gomes ba79d2e422 Add a source file for Indexer class
- Move some non-performance critical methods to the source file
- Fix some implicit declarions of members in iomanip
- Fix declaration order in Makefile.in
2013-02-16 16:42:08 +00:00
Tiago Gomes 0852c4fe22 Clean ups 2013-02-16 16:17:14 +00:00
Tiago Gomes d0f5d0f9ab Change LiftedOperations to be a namespace instead of class with static member functions 2013-02-16 16:00:53 +00:00
Tiago Gomes be24ff5160 Fix typos 2013-02-16 15:30:44 +00:00
Tiago Gomes acb4bf610f Clean HorusYap a bit 2013-02-16 01:54:11 +00:00
Tiago Gomes bf1ba17855 Fix typos detected by cppcheck 2013-02-13 23:47:00 +00:00
Tiago Gomes 57f46e7c0d Fix printed string showed when file opening fails 2013-02-13 19:18:55 +00:00
Tiago Gomes ab7f4c8113 Fix namespace name 2013-02-13 19:09:11 +00:00
Tiago Gomes ef4ebb4d7f Use camel case for constants and enumerators.
All capitals case should be reserved for macros and besides there is no big need to emphasize constness in general.
2013-02-13 18:54:15 +00:00
Tiago Gomes afd26ed9b4 Trivial 2013-02-13 15:25:55 +00:00
Tiago Gomes bd70033c06 Disallow copy and assign for Var too 2013-02-13 14:42:24 +00:00
Tiago Gomes 2bc123d72c Update class, struct and enum bracket style 2013-02-13 14:26:47 +00:00
Tiago Gomes e178c1af04 Change namespace name to be in Pascal case 2013-02-08 21:12:46 +00:00
Tiago Gomes 6a1a209ee3 Revert "Improve namespace names"
This reverts commit 973df43fe0.

On a second thought, namespaces are close to classes in the sense that both encapsulate data, so they should both use Pascal case notation.
2013-02-08 21:01:53 +00:00