diogo/yap-6.3
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1012 Commits

Author SHA1 Message Date
Vítor Santos Costa
83c5c7e7af more PFL support. 2012-09-26 00:04:58 +01:00
Tiago Gomes
265766277f Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-09-24 22:23:48 +01:00
Vítor Santos Costa
83418f8f27 bdd and pfl integration work (partial patch). 2012-09-24 14:36:30 +01:00
Vítor Santos Costa
ac863833ff PFL machinery 2012-09-23 13:25:15 +01:00
Vítor Santos Costa
309dfaa813 aggregates in PFL: exa,ple 2012-09-23 13:24:49 +01:00
Vítor Santos Costa
34dc03d43b new version of ve 2012-09-23 13:23:53 +01:00
Vítor Santos Costa
2603f18a10 support factors 2012-09-23 13:23:37 +01:00
Vítor Santos Costa
d73b2ac673 convert keys to numbers. 2012-09-23 13:23:05 +01:00
Vítor Santos Costa
709843717f latest swi repo 2012-09-21 13:11:46 +01:00
Vítor Santos Costa
2673c56982 new version. 2012-09-21 13:08:25 +01:00
Vítor Santos Costa
a3435f5a7b SWI compatibility additions 2012-09-21 13:07:10 +01:00
Vítor Santos Costa
ceb5785120 new commits. 2012-09-18 23:13:07 +01:00
Tiago Gomes
10b15f606a fix counting bp calculation of joint distribution 2012-09-18 17:24:22 +01:00
Tiago Gomes
701911ef09 forgot this 2012-09-11 18:48:54 +01:00
Tiago Gomes
febb17d753 fix factor joint 2012-09-11 18:48:16 +01:00
Tiago Gomes
86b57e961e fix memory leak 2012-09-11 18:40:41 +01:00
Costa Vitor
f4e965c02f more small fixes. 2012-08-29 16:36:46 -05:00
Costa Vitor
62ab5b3dcb new ve 2012-08-28 20:21:14 -05:00
Vítor Santos Costa
05d3266671 fix lib64 issues 2012-08-22 10:07:33 -05:00
Costa Vitor
a76f4f34d5 make EM work with PFL and BP. 2012-08-15 16:01:45 -05:00
Vítor Santos Costa
7e8cac9fb1 a step forward. 2012-08-13 09:23:36 -05:00
Costa Vitor
4756948967 fix processing of pfl ground networks. 2012-08-08 22:16:37 -05:00
Costa Vitor
652073caa4 Merge branch 'master' of git://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-08-08 11:17:50 -05:00
Vitor Santos Costa
ad609e39da Merge branch 'master' of git.dcc.fc.up.pt:yap-6.3 2012-08-08 04:00:06 +01:00
Vitor Santos Costa
d5ed379068 recognise weird trie. 2012-08-08 03:59:37 +01:00
Vitor Santos Costa
15bcaf97fc speedup. 2012-08-08 03:59:06 +01:00
Vítor Santos Costa
2b2cedc2b6 remove some comments and improve em interface. 2012-08-07 21:53:10 -05:00
Vítor Santos Costa
c159894c29 Merge branch 'master' of ssh://git.dcc.fc.up.pt/yap-6.3 2012-08-07 18:37:02 -05:00
Costa Vitor
98f68edd34 PFL files should have the PFL suffiv 2012-08-07 18:35:44 -05:00
Costa Vitor
e2fa3a3b8a fix call to ground solvers, both using clpbn style and horus style. 2012-08-07 18:33:51 -05:00
Vítor Santos Costa
a4ae6acbb6 check for Rinterface.h 2012-08-02 19:53:43 -05:00
Vitor Santos Costa
7458d8ee74 update to newer releases. 2012-08-01 19:48:29 +01:00
Costa Vitor
8ba1de7250 fixes for external CUDD compatibility. 2012-07-16 11:58:21 -05:00
Vitor Santos Costa
d78a55ca83 fix cudd support. 2012-07-08 07:45:16 -05:00
Vítor Santos Costa
bc8c9a423a Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 
Conflicts:
	packages/jpl
 2012-07-07 09:54:27 -05:00
Vítor Santos Costa
1e1d49e112 allow installing examples by defult. 2012-07-07 09:43:07 -05:00
Vítor Santos Costa
d9decfe003 fix example path in meld. 2012-07-06 18:58:35 -05:00
Vítor Santos Costa
8a22258fdf use standard paths for installing examples. 2012-07-06 18:56:05 -05:00
Vitor Santos Costa
c67edd877a learning is debugging 2012-07-03 19:48:13 +01:00
Vitor Santos Costa
b4b1e68c35 Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-07-03 16:03:27 +01:00
Tiago Gomes
4af5a90b8b re-enable all elimination heuristics 2012-07-02 22:53:44 +01:00
Vitor Santos Costa
79b4c6cb25 new version. 2012-07-02 20:04:02 +01:00
Denys Duchier
97163fa150 place INLINE_ONLY at front of extern inline declarations AND definitions. gcc and clang then behave the same. 2012-06-30 20:42:14 +02:00
Tiago Gomes
7a3d39551b improve the way we compute hashs for counting bp 2012-06-30 19:25:29 +01:00
Vítor Santos Costa
70bde4d38f inline extern patch by Denys Duchier 2012-06-29 22:44:08 +01:00
Vítor Santos Costa
20b60649e5 new updates to jpl. 2012-06-29 22:42:08 +01:00
Vítor Santos Costa
e938c17748 fix clang compilation (Denys Duchier). 2012-06-29 22:24:12 +01:00
Tiago Gomes
5e2d9acc4f update comment 2012-06-26 19:44:27 +01:00
Vitor Santos Costa
fe2f99e49d update package version. 2012-06-22 19:00:45 +01:00
Vitor Santos Costa
87e0b67e76 start with pfl learning. 2012-06-22 19:00:12 +01:00
Vitor Santos Costa
5fe052a3ef Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-06-22 14:51:58 +01:00
Tiago Gomes
3e56cf5e42 update burglary-alarm 2012-06-19 21:19:02 +01:00
Tiago Gomes
25e87a5ddc whitespace fixes 2012-06-19 15:30:55 +01:00
Tiago Gomes
57edd6adb9 minor improvements 2012-06-19 15:29:09 +01:00
Tiago Gomes
ee5b8e693a re-activate bayes ball 2012-06-19 15:10:57 +01:00
Tiago Gomes
9a8464d0f0 some renamings 2012-06-19 14:32:12 +01:00
Tiago Gomes
942bc8041e update burglary-alarm 2012-06-18 23:10:18 +01:00
Tiago Gomes
63739c6e31 minor updates 2012-06-18 23:08:37 +01:00
Tiago Gomes
b16b0b6a3f add a README file 2012-06-18 21:38:40 +01:00
Tiago Gomes
b4d2e7af20 remove unecessary call 2012-06-18 14:40:44 +01:00
Tiago Gomes
05b3daf5bb trivial fix 2012-06-14 12:19:51 +01:00
Tiago Gomes
384c108e62 fix joint calculation with lifted bp 2012-06-14 11:57:00 +01:00
Tiago Gomes
0e83a75b60 improve calculation of joint dist in counting bp 2012-06-13 12:47:41 +01:00
Tiago Gomes
b43e3316b3 forgot destructor 2012-06-13 12:17:49 +01:00
Tiago Gomes
89725dffbb rename some enums 2012-06-12 21:27:17 +01:00
Tiago Gomes
af11dbb445 reorder entries in the Makefile and drop some objects not required to build hcli 2012-06-12 16:55:32 +01:00
Tiago Gomes
d4f63b3942 drop Solver suffix and rename some files and classes 2012-06-12 16:29:57 +01:00
Vitor Santos Costa
f6de18cb09 6.2 fix to load_foreign atom. 2012-06-11 22:11:30 +01:00
Tiago Gomes
919116763f add a run all tests script 2012-06-08 14:11:54 +01:00
Tiago Gomes
4cc869a164 update scripts 2012-06-08 14:11:11 +01:00
Tiago Gomes
f8e714dcc3 add social domain benchmark with evidence 2012-06-08 14:08:14 +01:00
Tiago Gomes
51c279d24c increase the cost of the grounding operator 2012-06-08 13:35:00 +01:00
Vitor Santos Costa
31b8cb6440 windows support. 2012-06-08 06:54:03 -05:00
Tiago Gomes
5785260644 fix warning 2012-06-06 15:04:28 +01:00
Tiago Gomes
568bb27a66 forgot this 2012-06-05 15:33:24 +01:00
Tiago Gomes
2cf6a2a33d add benchmark tests for lbp 2012-06-05 15:23:41 +01:00
Vitor Santos Costa
3669cb894f Merge branch 'master' of https://github.com/tacgomes/yap6.3 
Conflicts:
	packages/CLPBN/clpbn/horus.yap
 2012-06-04 16:29:56 +01:00
Tiago Gomes
eec4b1452b print all lifted bp flags 2012-06-01 19:31:07 +01:00
Tiago Gomes
8fa8fff9f1 minor improvements 2012-06-01 19:29:57 +01:00
Tiago Gomes
25ccfa2f54 only allow joint dists on cliques 2012-06-01 19:29:23 +01:00
Tiago Gomes
4708685ed4 fix bug in Factor::contains 2012-06-01 14:03:39 +01:00
Vitor Santos Costa
71a62307f4 CLP(BN) stuff. 2012-06-01 13:17:39 +01:00
Tiago Gomes
ecde9649a8 fix header guard 2012-06-01 12:35:44 +01:00
Tiago Gomes
b5369db214 use only solveQuery 2012-05-31 23:06:53 +01:00
Tiago Gomes
f91e543d9d workaround c++ bad design: don't allow creating a factor graph from some pointer 2012-05-31 22:42:38 +01:00
Tiago Gomes
3f0f41c8a9 cleanup 2012-05-31 21:24:40 +01:00
Tiago Gomes
e11ed1a226 forgot these two 2012-05-31 21:24:15 +01:00
Tiago Gomes
22d8876d33 add support to (real) lifted belief propagation 2012-05-31 21:12:46 +01:00
Tiago Gomes
22780c4559 handle empty vectors in TinySet 2012-05-31 14:57:53 +01:00
Tiago Gomes
7429a39b48 fix a bug on absorving lifted evidence 2012-05-31 14:09:50 +01:00
Tiago Gomes
c2297c3f70 add lbp flag 2012-05-31 12:45:09 +01:00
Tiago Gomes
d00eb05624 use bind2nd instead of bind1st 2012-05-31 12:19:13 +01:00
Tiago Gomes
6668ee6381 add initial skeleton for lifted bp 2012-05-30 19:23:41 +01:00
Tiago Gomes
8d14593c3e add an enum for lifted solvers and do some renamings 2012-05-30 17:17:39 +01:00
Tiago Gomes
ac38e9e6a6 minor improvement 2012-05-29 17:19:49 +01:00
Tiago Gomes
651051484b update TODO 2012-05-29 17:14:29 +01:00
Tiago Gomes
02395daed3 add a sequential elimination heuristic 2012-05-29 17:14:01 +01:00
Tiago Gomes
0315cd51a3 remove repeated elements in TinySet 2012-05-29 17:09:45 +01:00
Tiago Gomes
6feb746412 use STL to calculate L1 distance and max norm 2012-05-29 13:48:08 +01:00
Tiago Gomes
3ac854b2ff use more Util::sizeExpected 2012-05-28 21:27:52 +01:00
Tiago Gomes
54ae29ae02 replace Util::add and Util::multiply by Util::apply_n_times 2012-05-28 21:09:56 +01:00
Tiago Gomes
f489a59194 use std::accumulate to calc the msg size 2012-05-28 20:59:39 +01:00
Tiago Gomes
57e32267fe remove unecessary code 2012-05-28 19:47:20 +01:00
Tiago Gomes
62283f353c some renamings 2012-05-28 19:41:24 +01:00
Tiago Gomes
64b53e8180 minor improvements 2012-05-28 19:10:29 +01:00
Tiago Gomes
004e6c0c5f minor improvements 2012-05-28 18:26:15 +01:00
Tiago Gomes
0cee50496e fix compilation in older gcc 2012-05-28 17:57:45 +01:00
Tiago Gomes
d5c2e6833d use convenient function 2012-05-28 17:43:48 +01:00
Tiago Gomes
0ad8f5fb4a remove whitespace 2012-05-28 17:01:07 +01:00
Tiago Gomes
149f3dab26 fix a bug in exporting to uai format 2012-05-28 17:00:46 +01:00
Tiago Gomes
3ee176c65b fix header guard 2012-05-28 16:59:41 +01:00
Tiago Gomes
f3ca7b2dfc add elementsToString and move things around a bit 2012-05-28 16:57:45 +01:00
Tiago Gomes
1352a526c3 refactor the way we export to libDAI 2012-05-28 14:42:20 +01:00
Tiago Gomes
250d122fc8 prefix is better than postfix 2012-05-28 14:12:18 +01:00
Tiago Gomes
a9c369aac1 size_t invasion, part II 2012-05-28 14:01:05 +01:00
Tiago Gomes
4a02997484 be consistent: s/copy/backup 2012-05-28 12:34:39 +01:00
Tiago Gomes
3986012e56 rename CutIndexer to MapIndexer 2012-05-28 12:32:15 +01:00
Tiago Gomes
3290834dfe be consistent with other functions 2012-05-28 12:24:10 +01:00
Tiago Gomes
fb9bb5c8b5 remove unused method 2012-05-28 12:18:39 +01:00
Tiago Gomes
6034f7a264 refactor the function to reorder arguments 2012-05-28 12:17:47 +01:00
Tiago Gomes
1239832c21 refactor the way we calculate the product of two factors 2012-05-26 20:58:56 +01:00
Tiago Gomes
bc2da47804 add a new handy constructor to CutIndexer class 2012-05-26 20:56:41 +01:00
Tiago Gomes
918666d7f6 add a randomize function 2012-05-26 20:44:39 +01:00
Tiago Gomes
c1bd230e61 small improvement 2012-05-25 21:26:40 +01:00
Tiago Gomes
4b2ffee015 minor renaming 2012-05-25 21:22:48 +01:00
Tiago Gomes
2efca0c85a refactor indexer classes and receive te ranges as a constant reference 2012-05-25 21:16:08 +01:00
Tiago Gomes
5ff161b10f refactor functions for summing out 2012-05-25 20:15:05 +01:00
Tiago Gomes
df8a3c5fdc fix a recent bug in StatesIndexer.h 2012-05-25 14:36:52 +01:00
Tiago Gomes
a56bccf5e5 delete unused method 2012-05-24 23:39:38 +01:00
Tiago Gomes
18d4777d9a use PrvGroup 2012-05-24 23:38:44 +01:00
Tiago Gomes
af6601837c size_t invasion 2012-05-24 22:55:20 +01:00
Tiago Gomes
5124098b6c delete unused code 2012-05-24 16:21:41 +01:00
Tiago Gomes
acc5ab056a some refactorings 2012-05-24 16:14:13 +01:00
Tiago Gomes
444eaacc63 add operators to manipulate vectors of parameters 2012-05-24 14:55:30 +01:00
Tiago Gomes
6cb718942a some renamings 2012-05-23 21:23:03 +01:00
Tiago Gomes
d91e91b97e prefix calls to c++ functions with cpp_ 2012-05-23 20:34:57 +01:00
Tiago Gomes
2b896aecb4 add examples to the Makefile 2012-05-23 19:59:40 +01:00
Tiago Gomes
9f236dccdd rename bp.yap and fove.yap 2012-05-23 19:15:23 +01:00
Tiago Gomes
cf929b6f13 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-05-23 17:59:26 +01:00
Tiago Gomes
c04082dc2e move benchmarks one level up 2012-05-23 17:27:21 +01:00
Tiago Gomes
3890aafc1a update examples 2012-05-23 17:17:50 +01:00
Tiago Gomes
bdef49bb20 remove city old example 2012-05-23 15:57:00 +01:00
Tiago Gomes
efec94adff remove two unnecessary files 2012-05-23 15:55:39 +01:00
Tiago Gomes
584e363aa1 move graphical model examples 2012-05-23 15:48:03 +01:00
Tiago Gomes
5b38891c21 third try ... 2012-05-23 14:58:26 +01:00
Tiago Gomes
6c77afb3ae ok, second try 2012-05-23 14:56:01 +01:00
Tiago Gomes
a4d181eb97 update benchmarks 2012-05-23 12:40:34 +01:00
Tiago Gomes
7c3e4ed3ab improve log information 2012-05-23 12:26:14 +01:00
Vitor Santos Costa
9e3d16022a fix YAP_AttOfVar 
beautify get atts
 2012-05-21 17:24:40 +01:00
Tiago Gomes
16cb48fea4 decrease the time required to find an elimination order 2012-05-17 17:29:31 +01:00