Tiago Gomes
|
610e55a4a2
|
Improve debbuging for lifted knowledge compilation
|
2012-11-26 14:46:45 +00:00 |
|
Tiago Gomes
|
1f1d194326
|
remove unnecessary std set
|
2012-11-26 14:46:00 +00:00 |
|
Tiago Gomes
|
a2429a1eec
|
Merge branch 'master' of github.com:tacgomes/yap6.3
|
2012-11-26 11:48:24 +00:00 |
|
Tiago Gomes
|
e09c25bd59
|
remove grounding stub form lifted knowledge compilation. its hard to implement
|
2012-11-22 16:34:24 +00:00 |
|
Tiago Gomes
|
85db763d9c
|
small improvement in HorusYap
|
2012-11-16 22:38:14 +00:00 |
|
Tiago Gomes
|
51eef45b2d
|
refactor HorusYap
|
2012-11-16 17:10:04 +00:00 |
|
Tiago Gomes
|
59fd21bf33
|
use only 1 lifted solver instance
|
2012-11-16 16:50:19 +00:00 |
|
Tiago Gomes
|
51fd48cd46
|
Ouchgit statusgit status! forgot to add these to index
|
2012-11-14 23:17:39 +00:00 |
|
Tiago Gomes
|
4522850cd6
|
one step close to use one solver instatiation to solve several queries
|
2012-11-14 23:13:46 +00:00 |
|
Tiago Gomes
|
64a27847cc
|
Introduce a lifted solver class
|
2012-11-14 21:55:51 +00:00 |
|
Tiago Gomes
|
6e7d0d1d0a
|
remove old TODOs
|
2012-11-14 21:17:04 +00:00 |
|
Tiago Gomes
|
cad22da9f5
|
fixes & cleanups
|
2012-11-14 21:05:55 +00:00 |
|
Tiago Gomes
|
d9e48e6290
|
log domain calculations fixes for lifted knowledge compilation
|
2012-11-14 18:40:03 +00:00 |
|
Tiago Gomes
|
9202e286f8
|
IncExc: check if log vars are count normalized
|
2012-11-14 14:43:56 +00:00 |
|
Tiago Gomes
|
f5c85ffcc9
|
shatter agains the query in lifted knowledge compilation
|
2012-11-12 15:20:42 +00:00 |
|
Tiago Gomes
|
4776817603
|
move more code around
|
2012-11-10 00:18:20 +00:00 |
|
Tiago Gomes
|
07bcc89a76
|
factor out some lifted operations in a new class
|
2012-11-09 23:52:35 +00:00 |
|
Tiago Gomes
|
8ab622e0aa
|
more work to support inference with lifted knowledge compilation
|
2012-11-09 18:42:21 +00:00 |
|
Tiago Gomes
|
6a200760ca
|
initial code to support calling a lifted knowledge compilation solver
|
2012-11-08 21:54:47 +00:00 |
|
Tiago Gomes
|
0ed89d3eeb
|
add flag to lifted knowledge compilation and s/fove/lve
|
2012-11-08 15:05:48 +00:00 |
|
Tiago Gomes
|
a8c4f4fc52
|
fix one more TODO
|
2012-11-08 14:02:18 +00:00 |
|
Tiago Gomes
|
f7db522c6c
|
InxExc: improve the code
|
2012-11-07 23:45:43 +00:00 |
|
Tiago Gomes
|
6db4d37684
|
Independence: consider also counted log vars
|
2012-11-07 21:21:42 +00:00 |
|
Tiago Gomes
|
d2ae171bb5
|
Improve Clause constructor
|
2012-11-07 18:43:13 +00:00 |
|
Tiago Gomes
|
278f8f77f5
|
Improve independence
|
2012-11-07 18:42:11 +00:00 |
|
Tiago Gomes
|
07c6509a79
|
cleanups, refactorings & renamings
|
2012-11-07 15:28:33 +00:00 |
|
Tiago Gomes
|
83c1e58674
|
clean ups
|
2012-11-07 12:37:22 +00:00 |
|
Tiago Gomes
|
b599b45bc6
|
AC: only allow one counting node per branch
|
2012-11-06 23:56:52 +00:00 |
|
Tiago Gomes
|
829f2248ee
|
use utility method
|
2012-11-06 23:39:18 +00:00 |
|
Tiago Gomes
|
06a59ad659
|
IPG: verify that the root log vars appear in the same positions
|
2012-11-06 23:35:14 +00:00 |
|
Tiago Gomes
|
1e38743462
|
fix ipgCandidates
|
2012-11-06 16:24:59 +00:00 |
|
Tiago Gomes
|
869d513c1a
|
remove and add some TODOs
|
2012-11-06 15:57:54 +00:00 |
|
Tiago Gomes
|
5e1547ba78
|
add missing method to TinySet
|
2012-11-06 15:15:55 +00:00 |
|
Tiago Gomes
|
ab334f82b2
|
fix weighted model counting in atom counting nodes
|
2012-11-06 14:16:04 +00:00 |
|
Tiago Gomes
|
4518a3db5d
|
support smoothing on atom counting nodes (beta)
|
2012-11-04 18:02:40 +00:00 |
|
Tiago Gomes
|
b8cef8798a
|
fix warning produced by new version of gcc
|
2012-11-01 22:54:14 +00:00 |
|
Tiago Gomes
|
a1d0deb638
|
support model counting on atom couting nodes - still untested
|
2012-11-01 22:34:28 +00:00 |
|
Tiago Gomes
|
d4912ea219
|
some reorders
|
2012-11-01 13:56:12 +00:00 |
|
Tiago Gomes
|
bfa9648067
|
clean up
|
2012-10-31 23:58:07 +00:00 |
|
Tiago Gomes
|
6877be897e
|
first stab for atom counting
|
2012-10-31 23:43:39 +00:00 |
|
Tiago Gomes
|
e762d6be22
|
tweak colors
|
2012-10-30 16:00:20 +00:00 |
|
Tiago Gomes
|
77ef7b87cd
|
support smoothing in inclusion-exclusion nodes
|
2012-10-30 15:48:19 +00:00 |
|
Tiago Gomes
|
b31a047635
|
refactor exportToGraphViz
|
2012-10-30 14:31:52 +00:00 |
|
Tiago Gomes
|
a75799b34f
|
small improvements
|
2012-10-30 12:41:00 +00:00 |
|
Tiago Gomes
|
864f764391
|
support model counting in inc-exc nodes
|
2012-10-30 01:51:10 +00:00 |
|
Tiago Gomes
|
8b77b93a3b
|
add support for inclusion-exclusion
|
2012-10-30 00:21:10 +00:00 |
|
Tiago Gomes
|
b6df8a66b1
|
add assignement operator to ConstraintTree
|
2012-10-30 00:15:40 +00:00 |
|
Tiago Gomes
|
d07ea73050
|
add projectedCopy
|
2012-10-29 21:37:58 +00:00 |
|
Tiago Gomes
|
324ea1a96c
|
make independent partial ground suck less
|
2012-10-29 20:49:21 +00:00 |
|
Tiago Gomes
|
c2b1434969
|
show weights in dot file and add support for smoothing set-and nodes
|
2012-10-29 15:39:56 +00:00 |
|
Tiago Gomes
|
fbc44ba17d
|
improments in exportToGraphViz
|
2012-10-29 13:49:11 +00:00 |
|
Tiago Gomes
|
d074ca9a8f
|
add initial independent partial grounding support
|
2012-10-27 00:13:11 +01:00 |
|
Tiago Gomes
|
68ef63207f
|
initial support for weighted model countign
|
2012-10-25 12:22:52 +01:00 |
|
Tiago Gomes
|
eac6b954a8
|
add inital smoothing of the circuit
|
2012-10-24 21:22:49 +01:00 |
|
Tiago Gomes
|
0cfc64d068
|
update TODO
|
2012-10-24 16:24:49 +01:00 |
|
Tiago Gomes
|
a8926fe38b
|
inital code for lifted knowledge compilation
|
2012-10-22 23:01:13 +01:00 |
|
Tiago Gomes
|
559b3e3b54
|
watch out for division by 0 in message calculation for BP
|
2012-09-30 22:04:44 +01:00 |
|
Tiago Gomes
|
10b15f606a
|
fix counting bp calculation of joint distribution
|
2012-09-18 17:24:22 +01:00 |
|
Tiago Gomes
|
701911ef09
|
forgot this
|
2012-09-11 18:48:54 +01:00 |
|
Tiago Gomes
|
febb17d753
|
fix factor joint
|
2012-09-11 18:48:16 +01:00 |
|
Tiago Gomes
|
86b57e961e
|
fix memory leak
|
2012-09-11 18:40:41 +01:00 |
Vítor Santos Costa
|
05d3266671
|
fix lib64 issues
|
2012-08-22 10:07:33 -05:00 |
|
Tiago Gomes
|
4af5a90b8b
|
re-enable all elimination heuristics
|
2012-07-02 22:53:44 +01:00 |
|
Tiago Gomes
|
7a3d39551b
|
improve the way we compute hashs for counting bp
|
2012-06-30 19:25:29 +01:00 |
|
Tiago Gomes
|
25e87a5ddc
|
whitespace fixes
|
2012-06-19 15:30:55 +01:00 |
|
Tiago Gomes
|
57edd6adb9
|
minor improvements
|
2012-06-19 15:29:09 +01:00 |
|
Tiago Gomes
|
ee5b8e693a
|
re-activate bayes ball
|
2012-06-19 15:10:57 +01:00 |
|
Tiago Gomes
|
9a8464d0f0
|
some renamings
|
2012-06-19 14:32:12 +01:00 |
|
Tiago Gomes
|
05b3daf5bb
|
trivial fix
|
2012-06-14 12:19:51 +01:00 |
|
Tiago Gomes
|
384c108e62
|
fix joint calculation with lifted bp
|
2012-06-14 11:57:00 +01:00 |
|
Tiago Gomes
|
0e83a75b60
|
improve calculation of joint dist in counting bp
|
2012-06-13 12:47:41 +01:00 |
|
Tiago Gomes
|
b43e3316b3
|
forgot destructor
|
2012-06-13 12:17:49 +01:00 |
|
Tiago Gomes
|
89725dffbb
|
rename some enums
|
2012-06-12 21:27:17 +01:00 |
|
Tiago Gomes
|
af11dbb445
|
reorder entries in the Makefile and drop some objects not required to build hcli
|
2012-06-12 16:55:32 +01:00 |
|
Tiago Gomes
|
d4f63b3942
|
drop Solver suffix and rename some files and classes
|
2012-06-12 16:29:57 +01:00 |
|
Tiago Gomes
|
51c279d24c
|
increase the cost of the grounding operator
|
2012-06-08 13:35:00 +01:00 |
|
Tiago Gomes
|
5785260644
|
fix warning
|
2012-06-06 15:04:28 +01:00 |
|
Tiago Gomes
|
eec4b1452b
|
print all lifted bp flags
|
2012-06-01 19:31:07 +01:00 |
|
Tiago Gomes
|
8fa8fff9f1
|
minor improvements
|
2012-06-01 19:29:57 +01:00 |
|
Tiago Gomes
|
25ccfa2f54
|
only allow joint dists on cliques
|
2012-06-01 19:29:23 +01:00 |
|
Tiago Gomes
|
4708685ed4
|
fix bug in Factor::contains
|
2012-06-01 14:03:39 +01:00 |
|
Tiago Gomes
|
ecde9649a8
|
fix header guard
|
2012-06-01 12:35:44 +01:00 |
|
Tiago Gomes
|
b5369db214
|
use only solveQuery
|
2012-05-31 23:06:53 +01:00 |
|
Tiago Gomes
|
f91e543d9d
|
workaround c++ bad design: don't allow creating a factor graph from some pointer
|
2012-05-31 22:42:38 +01:00 |
|
Tiago Gomes
|
3f0f41c8a9
|
cleanup
|
2012-05-31 21:24:40 +01:00 |
|
Tiago Gomes
|
e11ed1a226
|
forgot these two
|
2012-05-31 21:24:15 +01:00 |
|
Tiago Gomes
|
22d8876d33
|
add support to (real) lifted belief propagation
|
2012-05-31 21:12:46 +01:00 |
|
Tiago Gomes
|
22780c4559
|
handle empty vectors in TinySet
|
2012-05-31 14:57:53 +01:00 |
|
Tiago Gomes
|
7429a39b48
|
fix a bug on absorving lifted evidence
|
2012-05-31 14:09:50 +01:00 |
|
Tiago Gomes
|
c2297c3f70
|
add lbp flag
|
2012-05-31 12:45:09 +01:00 |
|
Tiago Gomes
|
d00eb05624
|
use bind2nd instead of bind1st
|
2012-05-31 12:19:13 +01:00 |
|
Tiago Gomes
|
6668ee6381
|
add initial skeleton for lifted bp
|
2012-05-30 19:23:41 +01:00 |
|
Tiago Gomes
|
8d14593c3e
|
add an enum for lifted solvers and do some renamings
|
2012-05-30 17:17:39 +01:00 |
|
Tiago Gomes
|
ac38e9e6a6
|
minor improvement
|
2012-05-29 17:19:49 +01:00 |
|
Tiago Gomes
|
651051484b
|
update TODO
|
2012-05-29 17:14:29 +01:00 |
|
Tiago Gomes
|
02395daed3
|
add a sequential elimination heuristic
|
2012-05-29 17:14:01 +01:00 |
|
Tiago Gomes
|
0315cd51a3
|
remove repeated elements in TinySet
|
2012-05-29 17:09:45 +01:00 |
|
Tiago Gomes
|
6feb746412
|
use STL to calculate L1 distance and max norm
|
2012-05-29 13:48:08 +01:00 |
|
Tiago Gomes
|
3ac854b2ff
|
use more Util::sizeExpected
|
2012-05-28 21:27:52 +01:00 |
|
Tiago Gomes
|
54ae29ae02
|
replace Util::add and Util::multiply by Util::apply_n_times
|
2012-05-28 21:09:56 +01:00 |
|
Tiago Gomes
|
f489a59194
|
use std::accumulate to calc the msg size
|
2012-05-28 20:59:39 +01:00 |
|
Tiago Gomes
|
57e32267fe
|
remove unecessary code
|
2012-05-28 19:47:20 +01:00 |
|
Tiago Gomes
|
62283f353c
|
some renamings
|
2012-05-28 19:41:24 +01:00 |
|
Tiago Gomes
|
64b53e8180
|
minor improvements
|
2012-05-28 19:10:29 +01:00 |
|
Tiago Gomes
|
004e6c0c5f
|
minor improvements
|
2012-05-28 18:26:15 +01:00 |
|
Tiago Gomes
|
0cee50496e
|
fix compilation in older gcc
|
2012-05-28 17:57:45 +01:00 |
|
Tiago Gomes
|
d5c2e6833d
|
use convenient function
|
2012-05-28 17:43:48 +01:00 |
|
Tiago Gomes
|
149f3dab26
|
fix a bug in exporting to uai format
|
2012-05-28 17:00:46 +01:00 |
|
Tiago Gomes
|
3ee176c65b
|
fix header guard
|
2012-05-28 16:59:41 +01:00 |
|
Tiago Gomes
|
f3ca7b2dfc
|
add elementsToString and move things around a bit
|
2012-05-28 16:57:45 +01:00 |
|
Tiago Gomes
|
1352a526c3
|
refactor the way we export to libDAI
|
2012-05-28 14:42:20 +01:00 |
|
Tiago Gomes
|
250d122fc8
|
prefix is better than postfix
|
2012-05-28 14:12:18 +01:00 |
|
Tiago Gomes
|
a9c369aac1
|
size_t invasion, part II
|
2012-05-28 14:01:05 +01:00 |
|
Tiago Gomes
|
4a02997484
|
be consistent: s/copy/backup
|
2012-05-28 12:34:39 +01:00 |
|
Tiago Gomes
|
3986012e56
|
rename CutIndexer to MapIndexer
|
2012-05-28 12:32:15 +01:00 |
|
Tiago Gomes
|
3290834dfe
|
be consistent with other functions
|
2012-05-28 12:24:10 +01:00 |
|
Tiago Gomes
|
fb9bb5c8b5
|
remove unused method
|
2012-05-28 12:18:39 +01:00 |
|
Tiago Gomes
|
6034f7a264
|
refactor the function to reorder arguments
|
2012-05-28 12:17:47 +01:00 |
|
Tiago Gomes
|
1239832c21
|
refactor the way we calculate the product of two factors
|
2012-05-26 20:58:56 +01:00 |
|
Tiago Gomes
|
bc2da47804
|
add a new handy constructor to CutIndexer class
|
2012-05-26 20:56:41 +01:00 |
|
Tiago Gomes
|
918666d7f6
|
add a randomize function
|
2012-05-26 20:44:39 +01:00 |
|
Tiago Gomes
|
c1bd230e61
|
small improvement
|
2012-05-25 21:26:40 +01:00 |
|
Tiago Gomes
|
4b2ffee015
|
minor renaming
|
2012-05-25 21:22:48 +01:00 |
|
Tiago Gomes
|
2efca0c85a
|
refactor indexer classes and receive te ranges as a constant reference
|
2012-05-25 21:16:08 +01:00 |
|
Tiago Gomes
|
5ff161b10f
|
refactor functions for summing out
|
2012-05-25 20:15:05 +01:00 |
|
Tiago Gomes
|
df8a3c5fdc
|
fix a recent bug in StatesIndexer.h
|
2012-05-25 14:36:52 +01:00 |
|
Tiago Gomes
|
a56bccf5e5
|
delete unused method
|
2012-05-24 23:39:38 +01:00 |
|
Tiago Gomes
|
18d4777d9a
|
use PrvGroup
|
2012-05-24 23:38:44 +01:00 |
|
Tiago Gomes
|
af6601837c
|
size_t invasion
|
2012-05-24 22:55:20 +01:00 |
|
Tiago Gomes
|
5124098b6c
|
delete unused code
|
2012-05-24 16:21:41 +01:00 |
|
Tiago Gomes
|
acc5ab056a
|
some refactorings
|
2012-05-24 16:14:13 +01:00 |
|
Tiago Gomes
|
444eaacc63
|
add operators to manipulate vectors of parameters
|
2012-05-24 14:55:30 +01:00 |
|
Tiago Gomes
|
6cb718942a
|
some renamings
|
2012-05-23 21:23:03 +01:00 |
|
Tiago Gomes
|
d91e91b97e
|
prefix calls to c++ functions with cpp_
|
2012-05-23 20:34:57 +01:00 |
|
Tiago Gomes
|
c04082dc2e
|
move benchmarks one level up
|
2012-05-23 17:27:21 +01:00 |
|
Tiago Gomes
|
efec94adff
|
remove two unnecessary files
|
2012-05-23 15:55:39 +01:00 |
|
Tiago Gomes
|
584e363aa1
|
move graphical model examples
|
2012-05-23 15:48:03 +01:00 |
|
Tiago Gomes
|
6c77afb3ae
|
ok, second try
|
2012-05-23 14:56:01 +01:00 |