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1679 Commits

Author SHA1 Message Date
Tiago Gomes
83ccb31665 PFL manual: rework the parameter learning section 2013-01-12 12:30:34 +00:00
Tiago Gomes
90614d3594 PFL manual: minor tweaks 2013-01-12 12:30:14 +00:00
Tiago Gomes
3ecc65b816 PFL manual: fix typo, is sprinkler not sprinker 2013-01-11 21:15:01 +00:00
Tiago Gomes
509491cd0f PFL manual: improve the way we present the solver options 2013-01-11 19:39:27 +00:00
Tiago Gomes
8c8e2b034f Improve a bit the learning examples 2013-01-11 00:16:56 +00:00
Tiago Gomes
8285b8e1e4 Cuttify\! 2013-01-10 23:38:46 +00:00
Tiago Gomes
8f9b11cc7c Comment set_em_solver so that hve becomes that default 2013-01-10 23:04:17 +00:00
Tiago Gomes
4aa4cb50b0 Switch solver order in examples 2013-01-10 23:02:34 +00:00
Tiago Gomes
f3bd8ad414 Use the word option instead of key. Key reminds me of hashes 2013-01-10 22:59:12 +00:00
Tiago Gomes
f7fcfec8ce PFL manual: some rewording 2013-01-10 22:42:23 +00:00
Tiago Gomes
d3e2abd677 Don't use the name horus in documentation. 
It is just an internal code name.
 2013-01-10 22:39:46 +00:00
Tiago Gomes
fdeca2852a Use only one interface for options. 
set_pfl_flag/2 now can be called for setting options for solvers written in Prolog and for solvers in Horus.
 2013-01-10 22:10:22 +00:00
Tiago Gomes
e5e224d89b Fix typo 2013-01-10 21:51:45 +00:00
Tiago Gomes
bd84949f09 Trivial 2013-01-10 17:23:09 +00:00
Tiago Gomes
1bb1138b3a Fix EM typos 2013-01-10 13:45:24 +00:00
Vitor Santos Costa
b7ef6576a6 add keys within learning 2013-01-09 18:34:19 +00:00
Vitor Santos Costa
6cee85bd60 fix cases where you get repeated keys or a(X,X) keys in PFL. 2013-01-09 18:22:01 +00:00
Vitor Santos Costa
46fbc539bf handle repeated query vars with evidence 2013-01-09 17:49:07 +00:00
Vitor Santos Costa
ff953eb20a Merge branch 'master' of https://github.com/tacgomes/yap6.3 2013-01-09 16:48:16 +00:00
tacgomes
2feac46e54 PFL manual: several improvements 2013-01-09 16:45:01 +00:00
tacgomes
7f452d2397 Refactor the benchmarks 2013-01-09 15:25:14 +00:00
tagomes@fc.up.pt
7fabfcf4c9 Trivial 2013-01-09 11:43:40 +00:00
Tiago Gomes
24271157ce Clean unecessary latex documents 2013-01-08 22:55:27 +00:00
Tiago Gomes
59ae52623c PFL manual: several improvements 2013-01-08 22:51:44 +00:00
Tiago Gomes
6755e50525 PFL manual: small improvements 2013-01-08 22:00:31 +00:00
Tiago Gomes
ea054468bc Improve hcli usage string 2013-01-08 21:17:56 +00:00
Tiago Gomes
dc536fabc2 Beautify setHorusFlag 2013-01-08 21:13:58 +00:00
Tiago Gomes
2738d83302 Remove some alias for hve 2013-01-08 20:48:46 +00:00
Tiago Gomes
dfd7360291 Allow the use of solver as an alias of ground_solver 2013-01-08 20:47:12 +00:00
Tiago Gomes
dbd35a20a2 PFL manual: improve introduction section 2013-01-08 19:40:20 +00:00
Tiago Gomes
9c8fd804df PFL manual: add a further information section 2013-01-08 19:39:39 +00:00
Tiago Gomes
f94032d06c PFL manual: add an installation section 2013-01-08 19:39:03 +00:00
Tiago Gomes
1b9c4e96e7 Prefix with bp_ some bp flags 2013-01-08 17:06:40 +00:00
Tiago Gomes
da0514a779 Add support for more infernce keys. 
Add support for export_libdai, export_uai, export_gv and print_fg.
Document these keys.
 2013-01-08 17:01:03 +00:00
Tiago Gomes
4220069d90 PFL manual: use the Unix end-of-line marker 2013-01-08 15:34:56 +00:00
Tiago Gomes
75b652b0c9 PFL manual: improve title page and reword a sentence 2013-01-08 15:33:55 +00:00
Tiago Gomes
6375d05a93 PFL manual: add section for horus cli 2013-01-08 15:31:52 +00:00
Tiago Gomes
182429252e Update the usage string for hcli 2013-01-08 14:47:21 +00:00
Tiago Gomes
c92b7c3e7e Install hcli to the bin directory 2013-01-08 00:33:01 +00:00
Tiago Gomes
f598881cc5 Explain better the potential value order 2013-01-07 22:21:52 +00:00
Tiago Gomes
9bb43360a2 Rearrange the probabilities to do a clean diff against the exported model 2013-01-07 22:18:50 +00:00
Tiago Gomes
ba32ebc5f5 Add support for bayesian networks defined in an UAI file format 2013-01-07 22:17:05 +00:00
Tiago Gomes
82a4cc508b Change burglary-alarm.uai to be bayes instead of markov 2013-01-07 22:01:49 +00:00
Tiago Gomes
bafd7320a5 Rework a bit the examples 2013-01-07 14:59:51 +00:00
Tiago Gomes
91dbd60ad4 Allow calling set_horus_flag/2 without loading clpbn_horus 2013-01-07 14:05:56 +00:00
Tiago Gomes
96f4e7ea1b Fix typo 2013-01-07 14:04:44 +00:00
David Vaz
cdc15e8cd8 merge with yap-6.3 2013-01-06 20:09:48 +00:00
Tiago Gomes
ec2d9e0967 Trivial 2013-01-05 12:04:43 +00:00
Tiago Gomes
f0768e76f2 Improve Makefile 2013-01-05 01:02:19 +00:00
Tiago Gomes
f55ccdef33 Add a manual for PFL written in Latex 2013-01-05 00:49:39 +00:00
Tiago Gomes
c5a390460d Chanse use_logarithms default to true. 
Reasoning:
- In small networks, the use of logarithms is not noticed in terms of performance.
- In large networks, the chance to have a division by 0 is too high when not using logarithms.
 2013-01-04 19:48:31 +00:00
Tiago Gomes
f2682374fb Forgot to update the Makefile in the previous commit 2013-01-04 15:42:03 +00:00
Tiago Gomes
3347f0e676 Rename two examples 2013-01-03 23:44:30 +00:00
Tiago Gomes
d4d11cd4b4 Fix sprinkler probability order 2013-01-03 18:48:15 +00:00
Tiago Gomes
ea5dbe2bca Trivial 2013-01-03 18:26:12 +00:00
Tiago Gomes
d293c5e5a9 Trivial 2012-12-28 15:40:32 +00:00
Tiago Gomes
3363019c93 Remove unnecessary methods 2012-12-28 01:35:59 +00:00
Tiago Gomes
7d9af75c35 Improve solver flags 2012-12-27 23:21:32 +00:00
Tiago Gomes
d36b63ece3 Trivial 2012-12-27 22:29:20 +00:00
Tiago Gomes
c96496720b Trivial 2012-12-27 22:28:19 +00:00
Tiago Gomes
485c3e34b2 Use more DISALLOW_COPY_AND_ASSIGN 2012-12-27 22:25:45 +00:00
Tiago Gomes
7b7f663ac6 Don't use public members for solver flags 2012-12-27 15:44:40 +00:00
Tiago Gomes
b996436b24 Reorganize 2012-12-27 15:05:40 +00:00
Tiago Gomes
de0a118ae5 Move belief propagation stuff out from Horus.h 2012-12-27 15:00:30 +00:00
Tiago Gomes
cbea630fbf Cosmetic fixes 2012-12-27 12:54:58 +00:00
David Vaz
e6c2fa30ee Added uthash to store indexed predicates info 2012-12-27 12:11:14 +00:00
Tiago Gomes
8bdcb65907 Improve variable elimination 2012-12-26 22:55:48 +00:00
Tiago Gomes
188f359496 Fix a warning about a unitialized var 2012-12-26 21:48:05 +00:00
Tiago Gomes
d8c5725b2e This shouldn't be on the repository 2012-12-21 15:20:28 +00:00
Tiago Gomes
4b901d26d7 Improve error messages 2012-12-20 23:34:53 +00:00
Tiago Gomes
01d8f8e178 More whitespace cleanups 2012-12-20 23:19:10 +00:00
Vítor Santos Costa
3565a01f1e upstream 2012-12-20 21:41:06 +00:00
Tiago Gomes
421d6f72ee Place the constructor on the right place 2012-12-20 21:32:40 +00:00
Vitor Santos Costa
4098b9b964 fix compilation MT in win32 2012-12-20 21:15:01 +00:00
Tiago Gomes
57339760b9 Merge LiftedKc and LiftedCircuit in one file 2012-12-20 21:11:51 +00:00
Tiago Gomes
b44ed7db39 Improve the error messages 2012-12-20 18:07:50 +00:00
Tiago Gomes
685f46dc27 Fix 2012-12-20 17:41:52 +00:00
Tiago Gomes
053fa31bb2 Exit is better than abort. 
Also use a macro instead of integer to indicate failure.
 2012-12-20 17:37:59 +00:00
David Vaz
4efa594f0a UDI: more work 2012-12-20 17:13:30 +00:00
Tiago Gomes
2ca31ca14a Don't abort if opening a file to export to graphviz fails 2012-12-20 17:11:11 +00:00
Tiago Gomes
af8497af6e Sort the logical vars of the constraint tree when exporting to graphviz 2012-12-20 16:20:38 +00:00
David Vaz
a655c0bb51 Rtree working as a plugin in UDI 2012-12-20 10:21:55 +00:00
Tiago Gomes
046af409ba Change the default solver to be hve 2012-12-19 18:25:47 +00:00
Tiago Gomes
c407594146 Whitespace clean 2012-12-19 18:22:47 +00:00
Tiago Gomes
60ff9daafd Remove old example 2012-12-19 18:13:47 +00:00
Tiago Gomes
48254ba7d7 Lkc: fix some memory leaks 2012-12-19 17:45:53 +00:00
Tiago Gomes
2d1f5edc91 There is no more to do 2012-12-18 23:52:56 +00:00
Tiago Gomes
691188d5c9 Handle better formulas like f(X,X) 2012-12-18 23:51:51 +00:00
Tiago Gomes
0a661b0462 More cleanups 2012-12-18 22:47:43 +00:00
David Vaz
43e459b8f8 Changes Rtree so almost working 2012-12-18 18:26:59 +00:00
Tiago Gomes
4b0acbf8c1 Cleanups 2012-12-18 12:11:45 +00:00
Tiago Gomes
c7a4adcefb Fix finalizing horus ground solvers on EM 2012-12-17 23:59:52 +00:00
Tiago Gomes
5fa5dda579 Remove BP from clpbn interface to EM 2012-12-17 23:29:21 +00:00
Tiago Gomes
e1c862ebbe Refactor the way we set the inference solver 2012-12-17 23:14:54 +00:00
Tiago Gomes
f1499f99f3 Introduce set_em_solver and use it 2012-12-17 21:19:47 +00:00
Tiago Gomes
40a72a0a63 Improve error handling for choosing EM solver 2012-12-17 21:03:13 +00:00
David Vaz
8511e87e32 packages udi as module 2012-12-17 20:29:59 +00:00
David Vaz
bd25c61fbf New work on UDI 2012-12-17 20:23:03 +00:00
Tiago Gomes
9861f4aadb Is the EM solver that we want 2012-12-17 18:50:36 +00:00
Tiago Gomes
3eb6b76ddd Whitespace clean 2012-12-17 18:39:42 +00:00
Tiago Gomes
2f2f88e571 Several whitespace fixes 2012-12-17 17:57:00 +00:00
Tiago Gomes
409a230826 Use the same convetion for module import and export 2012-12-17 14:50:12 +00:00
Tiago Gomes
2738c0fb56 Use tabs instead of spaces for consistency 2012-12-17 12:13:08 +00:00
Tiago Gomes
d03ea1509e Trivial 2012-12-17 11:56:15 +00:00
Tiago Gomes
e35cf51476 Reorders and some reindentation 2012-12-17 11:53:57 +00:00
Tiago Gomes
9ff9be2f49 Don't pass around the Solver for EM 2012-12-15 16:11:03 +00:00
Tiago Gomes
81ac6f1913 Don't pass around the Solver in run_horus_ground_solver 2012-12-15 15:56:05 +00:00
Tiago Gomes
ea931f2f93 Comment 2012-12-15 00:41:00 +00:00
Tiago Gomes
55292ab745 Clean ups and don't forget cbp 2012-12-15 00:29:03 +00:00
Tiago Gomes
1174486576 VE??? 2012-12-15 00:16:06 +00:00
Tiago Gomes
2996a0b8b3 Comment does not apply 2012-12-15 00:14:45 +00:00
Tiago Gomes
e5479ff17c CLPBNs first, PFLs next 2012-12-15 00:13:53 +00:00
Tiago Gomes
6c95c50eb4 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-12-14 14:05:22 +00:00
Vitor Santos Costa
84b0529060 improve prism compatibility (fix asia). 2012-12-14 08:26:56 +00:00
Tiago Gomes
971b8b7487 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-12-13 23:48:16 +00:00
Tiago Gomes
eea7ce2885 Fix file names 2012-12-13 19:02:04 +00:00
Tiago Gomes
0594d43539 Cosmetic fixes 2012-12-13 17:51:43 +00:00
Tiago Gomes
05e53eaf37 Merge sch32 and school32_data and rename to school_32 2012-12-13 17:08:54 +00:00
Tiago Gomes
6b8301d9c4 CLP(BN) is dead. Long live the PFL 2012-12-13 17:04:14 +00:00
Tiago Gomes
d78baa48a1 Don't special case the tables in city.pfl 
Its hard to make them work in lifted networks
:
 2012-12-13 16:50:39 +00:00
Vitor Santos Costa
c4448d066a allow backtracking over possible values of constraints.a 2012-12-13 15:53:01 +00:00
Tiago Gomes
8b996c5dc9 Lkc: show that we exported the circuit to graphviz when debugging 2012-12-13 14:21:16 +00:00
Tiago Gomes
48413deae7 Ops: deleted this by accident in the previous commit 2012-12-13 14:08:16 +00:00
Tiago Gomes
dd8a92aaf3 Merge with upstream code 2012-12-13 12:55:55 +00:00
Tiago Gomes
11e688ffd7 Lkc: use utility function 2012-12-12 21:19:22 +00:00
Tiago Gomes
f2173d001e Lkc: fix bug when adding weights 2012-12-12 21:16:36 +00:00
Tiago Gomes
c7588c9361 Trivial 2012-12-12 17:03:11 +00:00
Tiago Gomes
4683d30d8e Trivial 2012-12-12 17:01:30 +00:00
Tiago Gomes
39bf95fe2b trivial 2012-12-12 16:28:18 +00:00
Tiago Gomes
8eb657aec2 Change extension of school parschema to pfl 2012-12-12 16:00:21 +00:00
Tiago Gomes
0f46c97481 Trivial 2012-12-12 15:47:09 +00:00
Tiago Gomes
e66ff6777c Be consistent: constraint is always on top 2012-12-12 15:41:41 +00:00
Tiago Gomes
66cd58655b Place the debug_school predicate into a different file 2012-12-12 15:36:38 +00:00
Tiago Gomes
01dfc5e2be Change extension of school_params 
school_params does not define any pfl network, so it shouldn't have pfl as the extension
 2012-12-12 15:26:49 +00:00
Tiago Gomes
108e310a0f Rework the learning examples 2012-12-12 15:16:30 +00:00
Tiago Gomes
f128b6de7a school_32 should use clp(bn) 2012-12-12 00:27:32 +00:00
Tiago Gomes
27a235f65b Remove text explaning pfl. 
The text is badly written and explanaing pfl shouldn't be in *.pfl files, but rather in paper or README file
 2012-12-11 23:36:10 +00:00
Tiago Gomes
4310e42562 rework examples 2012-12-11 23:06:09 +00:00
Tiago Gomes
ccba2d4177 update Makefile to reflect the change of extension to .pfl 2012-12-11 21:02:26 +00:00
Tiago Gomes
1641d1fa30 Remove files that souldn't be in the repository 2012-12-11 16:22:38 +00:00
Tiago Gomes
47bc8f22fc Examples: sprinker was converted from clpbn to pfl 2012-12-11 16:20:55 +00:00
Tiago Gomes
d8a7b7aad6 Examples: change extension to pfl 2012-12-11 16:19:59 +00:00
Tiago Gomes
a59c152962 Lkc: Fix smoothing in atom counting nodes 2012-12-11 16:02:48 +00:00
Tiago Gomes
bb68afe91d Fix an error caused by a temporary being out of scope 2012-12-11 15:52:20 +00:00
Tiago Gomes
1d732594e2 smooth circuit 
Smooth the circuit independent of the verbosity level, but don't smooth it when the compilation has fail.
 2012-12-10 19:39:09 +00:00
Tiago Gomes
8371e395dd fix typo 2012-12-10 19:37:41 +00:00
Tiago Gomes
a25f4584c8 support printing LitLvTypes objects 2012-12-10 18:48:54 +00:00
Tiago Gomes
9c8827c309 always copy clauses for backup 2012-12-09 22:57:39 +00:00
Tiago Gomes
90736156ae some clean ups 2012-12-09 22:13:58 +00:00
Tiago Gomes
e46d2177b7 rework a bit the test infrastructure for lkc 2012-12-09 22:04:33 +00:00
Tiago Gomes
907144db32 don't use a stack for atom counting operator 2012-12-09 19:46:14 +00:00
Tiago Gomes
57a31c2c36 fix showing the weights on edge labels when there is a SetOrNode ancestor 2012-12-09 17:33:36 +00:00
Tiago Gomes
59f653aabd move implementation of copyClauses to another file 2012-12-08 19:32:19 +00:00
Tiago Gomes
4edbcf86b8 Use pointers to refer to clauses for better performance 2012-12-08 19:17:19 +00:00
Vítor Santos Costa
354dbbf802 follow pldoc 2012-12-08 10:52:39 +00:00
Tiago Gomes
73b3594c97 lifted kc: when not debuging don't keep track of the origin clauses 2012-12-07 11:47:50 +00:00
Vitor Santos Costa
b98b09e7de improve utf-8 2012-12-07 08:10:21 +00:00
Vitor Santos Costa
a813a13412 mysqldb interface vs Prolog 2012-12-04 14:49:29 +00:00
Vitor Santos Costa
36ae500118 fixes 2012-12-03 12:39:25 +00:00
Vítor Santos Costa
d9d954abe1 fix handling of methods and classes with named objects: just use PyObject_Call() 2012-12-02 13:19:10 +00:00
Vitor Santos Costa
3c0e16030c imprive python interface 2012-12-01 14:28:25 +00:00
Tiago Gomes
ee1b7dcd21 abort when compilation failed 2012-11-27 16:54:02 +00:00
Vitor Santos Costa
683032432c more examples 2012-11-27 13:50:18 +00:00
Vítor Santos Costa
e529e79582 more progress 2012-11-27 12:10:41 +00:00
Vitor Santos Costa
f1874ecec0 inprove python interface. 2012-11-27 00:16:34 +00:00
Tiago Gomes
610e55a4a2 Improve debbuging for lifted knowledge compilation 2012-11-26 14:46:45 +00:00
Tiago Gomes
1f1d194326 remove unnecessary std set 2012-11-26 14:46:00 +00:00
Tiago Gomes
a2429a1eec Merge branch 'master' of github.com:tacgomes/yap6.3 2012-11-26 11:48:24 +00:00
Vítor Santos Costa
57ac65c83b new swi version. 2012-11-25 23:48:41 +00:00
Vítor Santos Costa
e470dfcdc7 more python stuff. 2012-11-25 23:37:28 +00:00
Vitor Santos Costa
d5b97ac15e quoting. 2012-11-24 12:23:00 +00:00
Tiago Gomes
e09c25bd59 remove grounding stub form lifted knowledge compilation. its hard to implement 2012-11-22 16:34:24 +00:00
Tiago Gomes
4afe6c8161 refactor horus_ground and horus_lifted 2012-11-22 16:33:22 +00:00
Tiago Gomes
992d06656d refactor horus_ground.yap 2012-11-22 15:54:30 +00:00
Vitor Santos Costa
027632456a Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-11-22 12:29:37 +00:00
Vitor Santos Costa
bb4d75f428 avoid messing up lifted solvers 2012-11-22 12:27:33 +00:00
Tiago Gomes
85db763d9c small improvement in HorusYap 2012-11-16 22:38:14 +00:00
Tiago Gomes
51eef45b2d refactor HorusYap 2012-11-16 17:10:04 +00:00
Tiago Gomes
59fd21bf33 use only 1 lifted solver instance 2012-11-16 16:50:19 +00:00
Tiago Gomes
c2791748d2 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-11-16 00:57:41 +00:00
Vitor Santos Costa
114a6732f0 add_factor should succeed if Constraints are satisfied 2012-11-15 17:28:57 +00:00
Tiago Gomes
51fd48cd46 Ouchgit statusgit status! forgot to add these to index 2012-11-14 23:17:39 +00:00
Tiago Gomes
4522850cd6 one step close to use one solver instatiation to solve several queries 2012-11-14 23:13:46 +00:00
Tiago Gomes
b673dfd462 fix type in an example 2012-11-14 23:12:03 +00:00
Tiago Gomes
64a27847cc Introduce a lifted solver class 2012-11-14 21:55:51 +00:00
Tiago Gomes
6e7d0d1d0a remove old TODOs 2012-11-14 21:17:04 +00:00
Tiago Gomes
cad22da9f5 fixes & cleanups 2012-11-14 21:05:55 +00:00
Tiago Gomes
d9e48e6290 log domain calculations fixes for lifted knowledge compilation 2012-11-14 18:40:03 +00:00
Vitor Santos Costa
416b407faa fixes i r..eal 2012-11-14 16:00:35 +00:00
Tiago Gomes
9202e286f8 IncExc: check if log vars are count normalized 2012-11-14 14:43:56 +00:00
Tiago Gomes
f5c85ffcc9 shatter agains the query in lifted knowledge compilation 2012-11-12 15:20:42 +00:00
Tiago Gomes
4776817603 move more code around 2012-11-10 00:18:20 +00:00
Tiago Gomes
07bcc89a76 factor out some lifted operations in a new class 2012-11-09 23:52:35 +00:00
Tiago Gomes
8ab622e0aa more work to support inference with lifted knowledge compilation 2012-11-09 18:42:21 +00:00
Tiago Gomes
c53220aa61 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-11-09 16:29:24 +00:00
Tiago Gomes
6a200760ca initial code to support calling a lifted knowledge compilation solver 2012-11-08 21:54:47 +00:00
Tiago Gomes
0ed89d3eeb add flag to lifted knowledge compilation and s/fove/lve 2012-11-08 15:05:48 +00:00
Tiago Gomes
a8c4f4fc52 fix one more TODO 2012-11-08 14:02:18 +00:00
Tiago Gomes
f7db522c6c InxExc: improve the code 2012-11-07 23:45:43 +00:00
Tiago Gomes
6db4d37684 Independence: consider also counted log vars 2012-11-07 21:21:42 +00:00
Tiago Gomes
d2ae171bb5 Improve Clause constructor 2012-11-07 18:43:13 +00:00
Tiago Gomes
278f8f77f5 Improve independence 2012-11-07 18:42:11 +00:00
Tiago Gomes
07c6509a79 cleanups, refactorings & renamings 2012-11-07 15:28:33 +00:00
Tiago Gomes
83c1e58674 clean ups 2012-11-07 12:37:22 +00:00
Tiago Gomes
b599b45bc6 AC: only allow one counting node per branch 2012-11-06 23:56:52 +00:00
Tiago Gomes
829f2248ee use utility method 2012-11-06 23:39:18 +00:00
Tiago Gomes
06a59ad659 IPG: verify that the root log vars appear in the same positions 2012-11-06 23:35:14 +00:00
Tiago Gomes
1e38743462 fix ipgCandidates 2012-11-06 16:24:59 +00:00
Tiago Gomes
869d513c1a remove and add some TODOs 2012-11-06 15:57:54 +00:00
Tiago Gomes
5e1547ba78 add missing method to TinySet 2012-11-06 15:15:55 +00:00
Tiago Gomes
ab334f82b2 fix weighted model counting in atom counting nodes 2012-11-06 14:16:04 +00:00
Vítor Santos Costa
06b915d568 more functionality 2012-11-05 13:49:15 +00:00
Tiago Gomes
4518a3db5d support smoothing on atom counting nodes (beta) 2012-11-04 18:02:40 +00:00
Vítor Santos Costa
eb63f30ab2 update version 2012-11-03 13:58:20 +00:00
Vítor Santos Costa
bf956ca639 python interface as a separate package 2012-11-02 22:37:27 +00:00
Tiago Gomes
b8cef8798a fix warning produced by new version of gcc 2012-11-01 22:54:14 +00:00
Tiago Gomes
a1d0deb638 support model counting on atom couting nodes - still untested 2012-11-01 22:34:28 +00:00
Tiago Gomes
d4912ea219 some reorders 2012-11-01 13:56:12 +00:00
Vitor Santos Costa
afc0c4c5a2 new version 2012-11-01 08:31:58 +00:00
Tiago Gomes
bfa9648067 clean up 2012-10-31 23:58:07 +00:00
Tiago Gomes
6877be897e first stab for atom counting 2012-10-31 23:43:39 +00:00
Tiago Gomes
e762d6be22 tweak colors 2012-10-30 16:00:20 +00:00
Tiago Gomes
77ef7b87cd support smoothing in inclusion-exclusion nodes 2012-10-30 15:48:19 +00:00
Tiago Gomes
b31a047635 refactor exportToGraphViz 2012-10-30 14:31:52 +00:00
Tiago Gomes
a75799b34f small improvements 2012-10-30 12:41:00 +00:00
Tiago Gomes
864f764391 support model counting in inc-exc nodes 2012-10-30 01:51:10 +00:00
Tiago Gomes
8b77b93a3b add support for inclusion-exclusion 2012-10-30 00:21:10 +00:00
Tiago Gomes
b6df8a66b1 add assignement operator to ConstraintTree 2012-10-30 00:15:40 +00:00
Tiago Gomes
d07ea73050 add projectedCopy 2012-10-29 21:37:58 +00:00
Tiago Gomes
324ea1a96c make independent partial ground suck less 2012-10-29 20:49:21 +00:00
Tiago Gomes
c2b1434969 show weights in dot file and add support for smoothing set-and nodes 2012-10-29 15:39:56 +00:00
Tiago Gomes
fbc44ba17d improments in exportToGraphViz 2012-10-29 13:49:11 +00:00
Vitor Santos Costa
eb79049bdb more improvements to interface 2012-10-28 18:22:09 +00:00
Tiago Gomes
d074ca9a8f add initial independent partial grounding support 2012-10-27 00:13:11 +01:00
Vitor Santos Costa
f33fe61ada more support. 2012-10-26 00:24:07 +01:00
Tiago Gomes
68ef63207f initial support for weighted model countign 2012-10-25 12:22:52 +01:00
Vítor Santos Costa
ea3f2f13e9 improve python interface 2012-10-25 00:33:02 +01:00
Tiago Gomes
eac6b954a8 add inital smoothing of the circuit 2012-10-24 21:22:49 +01:00
Tiago Gomes
0cfc64d068 update TODO 2012-10-24 16:24:49 +01:00
Vítor Santos Costa
d2da55463f more python fixes. 2012-10-23 10:18:24 +01:00
Vítor Santos Costa
0caac30c11 support lists 2012-10-23 10:16:32 +01:00
Vitor Santos Costa
84a5f518bf fix Makefile trouble 2012-10-23 09:06:38 +01:00
Vítor Santos Costa
b272205707 odbc and archive 2012-10-23 00:45:13 +01:00
Tiago Gomes
a8926fe38b inital code for lifted knowledge compilation 2012-10-22 23:01:13 +01:00
Vitor Santos Costa
f189784510 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-10-22 22:04:38 +01:00
Vítor Santos Costa
6bfd5bbe54 new version. 2012-10-22 21:39:45 +01:00
Vitor Santos Costa
32a01a5bf6 :new SWI modules. 2012-10-22 18:16:52 +01:00
Vitor Santos Costa
2de3917e4a socket testing 2012-10-17 17:30:51 +01:00
Vítor Santos Costa
fb2a17addf improve interface 2012-10-17 10:56:44 +01:00
Vítor Santos Costa
d6b3fc4325 new version. 2012-10-09 20:10:02 +01:00
Vitor Santos Costa
965b48f017 inew version. 2012-10-09 17:29:15 +01:00
Vitor Santos Costa
7c178d2644 newer version 2012-10-09 16:31:09 +01:00
Vítor Santos Costa
ecf5ac655f fun with python 2012-10-08 23:58:22 +01:00
Vitor Santos Costa
c4da6a9c68 update to newer version 2012-10-08 18:27:05 +01:00
Vítor Santos Costa
b24922fd38 fix bdd with em 2012-10-04 00:15:18 +01:00
Vitor Santos Costa
4e43aff605 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-10-03 17:17:24 +01:00
Vitor Santos Costa
93f13c9c8d Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-10-03 17:15:49 +01:00
Vítor Santos Costa
ab14365a30 try to make bdds work with EM. 2012-10-03 10:23:27 +01:00
Vitor Santos Costa
01e1a14160 improve indirect evidence handling in PFL queries (obs from Andrea) 2012-10-03 09:50:50 +01:00
Vítor Santos Costa
e6fb32d9ca fix problem with conditional_probability/3 and evidence (obs from Andrea Sterbini). 2012-10-02 14:26:42 +01:00
Vítor Santos Costa
85e9da1332 hve with em works now. 2012-10-02 08:49:16 +01:00
Tiago Gomes
559b3e3b54 watch out for division by 0 in message calculation for BP 2012-09-30 22:04:44 +01:00
Vítor Santos Costa
793907f710 more EM stuff 2012-09-29 11:50:00 +01:00
Tiago Gomes
fec0bd44b4 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-09-28 22:42:08 +01:00
Vítor Santos Costa
76088ca8b3 support binaries. 2012-09-26 23:10:22 +01:00
Vítor Santos Costa
74fd98832a upgrade compilation flags. 2012-09-26 22:59:22 +01:00
Vitor Santos Costa
7424a7376c fix reverse linking with yap from target library. 2012-09-26 14:49:21 +01:00
Vítor Santos Costa
83c5c7e7af more PFL support. 2012-09-26 00:04:58 +01:00
Tiago Gomes
265766277f Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-09-24 22:23:48 +01:00
Vítor Santos Costa
83418f8f27 bdd and pfl integration work (partial patch). 2012-09-24 14:36:30 +01:00
Vítor Santos Costa
ac863833ff PFL machinery 2012-09-23 13:25:15 +01:00
Vítor Santos Costa
309dfaa813 aggregates in PFL: exa,ple 2012-09-23 13:24:49 +01:00
Vítor Santos Costa
34dc03d43b new version of ve 2012-09-23 13:23:53 +01:00
Vítor Santos Costa
2603f18a10 support factors 2012-09-23 13:23:37 +01:00
Vítor Santos Costa
d73b2ac673 convert keys to numbers. 2012-09-23 13:23:05 +01:00
Vítor Santos Costa
709843717f latest swi repo 2012-09-21 13:11:46 +01:00
Vítor Santos Costa
2673c56982 new version. 2012-09-21 13:08:25 +01:00
Vítor Santos Costa
a3435f5a7b SWI compatibility additions 2012-09-21 13:07:10 +01:00
Vítor Santos Costa
ceb5785120 new commits. 2012-09-18 23:13:07 +01:00
Tiago Gomes
10b15f606a fix counting bp calculation of joint distribution 2012-09-18 17:24:22 +01:00
Tiago Gomes
701911ef09 forgot this 2012-09-11 18:48:54 +01:00
Tiago Gomes
febb17d753 fix factor joint 2012-09-11 18:48:16 +01:00
Tiago Gomes
86b57e961e fix memory leak 2012-09-11 18:40:41 +01:00
Costa Vitor
f4e965c02f more small fixes. 2012-08-29 16:36:46 -05:00
Costa Vitor
62ab5b3dcb new ve 2012-08-28 20:21:14 -05:00
Vítor Santos Costa
05d3266671 fix lib64 issues 2012-08-22 10:07:33 -05:00
Costa Vitor
a76f4f34d5 make EM work with PFL and BP. 2012-08-15 16:01:45 -05:00
Vítor Santos Costa
7e8cac9fb1 a step forward. 2012-08-13 09:23:36 -05:00
Costa Vitor
4756948967 fix processing of pfl ground networks. 2012-08-08 22:16:37 -05:00
Costa Vitor
652073caa4 Merge branch 'master' of git://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-08-08 11:17:50 -05:00
Vitor Santos Costa
ad609e39da Merge branch 'master' of git.dcc.fc.up.pt:yap-6.3 2012-08-08 04:00:06 +01:00
Vitor Santos Costa
d5ed379068 recognise weird trie. 2012-08-08 03:59:37 +01:00
Vitor Santos Costa
15bcaf97fc speedup. 2012-08-08 03:59:06 +01:00
Vítor Santos Costa
2b2cedc2b6 remove some comments and improve em interface. 2012-08-07 21:53:10 -05:00
Vítor Santos Costa
c159894c29 Merge branch 'master' of ssh://git.dcc.fc.up.pt/yap-6.3 2012-08-07 18:37:02 -05:00
Costa Vitor
98f68edd34 PFL files should have the PFL suffiv 2012-08-07 18:35:44 -05:00
Costa Vitor
e2fa3a3b8a fix call to ground solvers, both using clpbn style and horus style. 2012-08-07 18:33:51 -05:00
Vítor Santos Costa
a4ae6acbb6 check for Rinterface.h 2012-08-02 19:53:43 -05:00
Vitor Santos Costa
7458d8ee74 update to newer releases. 2012-08-01 19:48:29 +01:00
Costa Vitor
8ba1de7250 fixes for external CUDD compatibility. 2012-07-16 11:58:21 -05:00
Vitor Santos Costa
d78a55ca83 fix cudd support. 2012-07-08 07:45:16 -05:00
Vítor Santos Costa
bc8c9a423a Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 
Conflicts:
	packages/jpl
 2012-07-07 09:54:27 -05:00
Vítor Santos Costa
1e1d49e112 allow installing examples by defult. 2012-07-07 09:43:07 -05:00
Vítor Santos Costa
d9decfe003 fix example path in meld. 2012-07-06 18:58:35 -05:00
Vítor Santos Costa
8a22258fdf use standard paths for installing examples. 2012-07-06 18:56:05 -05:00
Vitor Santos Costa
c67edd877a learning is debugging 2012-07-03 19:48:13 +01:00
Vitor Santos Costa
b4b1e68c35 Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-07-03 16:03:27 +01:00
Tiago Gomes
4af5a90b8b re-enable all elimination heuristics 2012-07-02 22:53:44 +01:00
Vitor Santos Costa
79b4c6cb25 new version. 2012-07-02 20:04:02 +01:00
Denys Duchier
97163fa150 place INLINE_ONLY at front of extern inline declarations AND definitions. gcc and clang then behave the same. 2012-06-30 20:42:14 +02:00
Tiago Gomes
7a3d39551b improve the way we compute hashs for counting bp 2012-06-30 19:25:29 +01:00
Vítor Santos Costa
70bde4d38f inline extern patch by Denys Duchier 2012-06-29 22:44:08 +01:00
Vítor Santos Costa
20b60649e5 new updates to jpl. 2012-06-29 22:42:08 +01:00
Vítor Santos Costa
e938c17748 fix clang compilation (Denys Duchier). 2012-06-29 22:24:12 +01:00
Tiago Gomes
5e2d9acc4f update comment 2012-06-26 19:44:27 +01:00
Vitor Santos Costa
fe2f99e49d update package version. 2012-06-22 19:00:45 +01:00
Vitor Santos Costa
87e0b67e76 start with pfl learning. 2012-06-22 19:00:12 +01:00
Vitor Santos Costa
5fe052a3ef Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-06-22 14:51:58 +01:00
Tiago Gomes
3e56cf5e42 update burglary-alarm 2012-06-19 21:19:02 +01:00
Tiago Gomes
25e87a5ddc whitespace fixes 2012-06-19 15:30:55 +01:00
Tiago Gomes
57edd6adb9 minor improvements 2012-06-19 15:29:09 +01:00
Tiago Gomes
ee5b8e693a re-activate bayes ball 2012-06-19 15:10:57 +01:00
Tiago Gomes
9a8464d0f0 some renamings 2012-06-19 14:32:12 +01:00
Tiago Gomes
942bc8041e update burglary-alarm 2012-06-18 23:10:18 +01:00
Tiago Gomes
63739c6e31 minor updates 2012-06-18 23:08:37 +01:00
Tiago Gomes
b16b0b6a3f add a README file 2012-06-18 21:38:40 +01:00
Tiago Gomes
b4d2e7af20 remove unecessary call 2012-06-18 14:40:44 +01:00
Tiago Gomes
05b3daf5bb trivial fix 2012-06-14 12:19:51 +01:00
Tiago Gomes
384c108e62 fix joint calculation with lifted bp 2012-06-14 11:57:00 +01:00
Tiago Gomes
0e83a75b60 improve calculation of joint dist in counting bp 2012-06-13 12:47:41 +01:00
Tiago Gomes
b43e3316b3 forgot destructor 2012-06-13 12:17:49 +01:00
Tiago Gomes
89725dffbb rename some enums 2012-06-12 21:27:17 +01:00
Tiago Gomes
af11dbb445 reorder entries in the Makefile and drop some objects not required to build hcli 2012-06-12 16:55:32 +01:00
Tiago Gomes
d4f63b3942 drop Solver suffix and rename some files and classes 2012-06-12 16:29:57 +01:00
Vitor Santos Costa
f6de18cb09 6.2 fix to load_foreign atom. 2012-06-11 22:11:30 +01:00
Tiago Gomes
919116763f add a run all tests script 2012-06-08 14:11:54 +01:00
Tiago Gomes
4cc869a164 update scripts 2012-06-08 14:11:11 +01:00
Tiago Gomes
f8e714dcc3 add social domain benchmark with evidence 2012-06-08 14:08:14 +01:00
Tiago Gomes
51c279d24c increase the cost of the grounding operator 2012-06-08 13:35:00 +01:00
Vitor Santos Costa
31b8cb6440 windows support. 2012-06-08 06:54:03 -05:00
Tiago Gomes
5785260644 fix warning 2012-06-06 15:04:28 +01:00
Tiago Gomes
568bb27a66 forgot this 2012-06-05 15:33:24 +01:00
Tiago Gomes
2cf6a2a33d add benchmark tests for lbp 2012-06-05 15:23:41 +01:00
Vitor Santos Costa
3669cb894f Merge branch 'master' of https://github.com/tacgomes/yap6.3 
Conflicts:
	packages/CLPBN/clpbn/horus.yap
 2012-06-04 16:29:56 +01:00
Tiago Gomes
eec4b1452b print all lifted bp flags 2012-06-01 19:31:07 +01:00
Tiago Gomes
8fa8fff9f1 minor improvements 2012-06-01 19:29:57 +01:00
Tiago Gomes
25ccfa2f54 only allow joint dists on cliques 2012-06-01 19:29:23 +01:00
Tiago Gomes
4708685ed4 fix bug in Factor::contains 2012-06-01 14:03:39 +01:00
Vitor Santos Costa
71a62307f4 CLP(BN) stuff. 2012-06-01 13:17:39 +01:00
Tiago Gomes
ecde9649a8 fix header guard 2012-06-01 12:35:44 +01:00
Tiago Gomes
b5369db214 use only solveQuery 2012-05-31 23:06:53 +01:00
Tiago Gomes
f91e543d9d workaround c++ bad design: don't allow creating a factor graph from some pointer 2012-05-31 22:42:38 +01:00
Tiago Gomes
3f0f41c8a9 cleanup 2012-05-31 21:24:40 +01:00
Tiago Gomes
e11ed1a226 forgot these two 2012-05-31 21:24:15 +01:00
Tiago Gomes
22d8876d33 add support to (real) lifted belief propagation 2012-05-31 21:12:46 +01:00
Tiago Gomes
22780c4559 handle empty vectors in TinySet 2012-05-31 14:57:53 +01:00
Tiago Gomes
7429a39b48 fix a bug on absorving lifted evidence 2012-05-31 14:09:50 +01:00
Tiago Gomes
c2297c3f70 add lbp flag 2012-05-31 12:45:09 +01:00
Tiago Gomes
d00eb05624 use bind2nd instead of bind1st 2012-05-31 12:19:13 +01:00
Tiago Gomes
6668ee6381 add initial skeleton for lifted bp 2012-05-30 19:23:41 +01:00
Tiago Gomes
8d14593c3e add an enum for lifted solvers and do some renamings 2012-05-30 17:17:39 +01:00
Tiago Gomes
ac38e9e6a6 minor improvement 2012-05-29 17:19:49 +01:00
Tiago Gomes
651051484b update TODO 2012-05-29 17:14:29 +01:00
Tiago Gomes
02395daed3 add a sequential elimination heuristic 2012-05-29 17:14:01 +01:00
Tiago Gomes
0315cd51a3 remove repeated elements in TinySet 2012-05-29 17:09:45 +01:00
Tiago Gomes
6feb746412 use STL to calculate L1 distance and max norm 2012-05-29 13:48:08 +01:00
Tiago Gomes
3ac854b2ff use more Util::sizeExpected 2012-05-28 21:27:52 +01:00
Tiago Gomes
54ae29ae02 replace Util::add and Util::multiply by Util::apply_n_times 2012-05-28 21:09:56 +01:00
Tiago Gomes
f489a59194 use std::accumulate to calc the msg size 2012-05-28 20:59:39 +01:00
Tiago Gomes
57e32267fe remove unecessary code 2012-05-28 19:47:20 +01:00
Tiago Gomes
62283f353c some renamings 2012-05-28 19:41:24 +01:00
Tiago Gomes
64b53e8180 minor improvements 2012-05-28 19:10:29 +01:00
Tiago Gomes
004e6c0c5f minor improvements 2012-05-28 18:26:15 +01:00
Tiago Gomes
0cee50496e fix compilation in older gcc 2012-05-28 17:57:45 +01:00
Tiago Gomes
d5c2e6833d use convenient function 2012-05-28 17:43:48 +01:00
Tiago Gomes
0ad8f5fb4a remove whitespace 2012-05-28 17:01:07 +01:00
Tiago Gomes
149f3dab26 fix a bug in exporting to uai format 2012-05-28 17:00:46 +01:00
Tiago Gomes
3ee176c65b fix header guard 2012-05-28 16:59:41 +01:00
Tiago Gomes
f3ca7b2dfc add elementsToString and move things around a bit 2012-05-28 16:57:45 +01:00
Tiago Gomes
1352a526c3 refactor the way we export to libDAI 2012-05-28 14:42:20 +01:00
Tiago Gomes
250d122fc8 prefix is better than postfix 2012-05-28 14:12:18 +01:00
Tiago Gomes
a9c369aac1 size_t invasion, part II 2012-05-28 14:01:05 +01:00
Tiago Gomes
4a02997484 be consistent: s/copy/backup 2012-05-28 12:34:39 +01:00
Tiago Gomes
3986012e56 rename CutIndexer to MapIndexer 2012-05-28 12:32:15 +01:00
Tiago Gomes
3290834dfe be consistent with other functions 2012-05-28 12:24:10 +01:00
Tiago Gomes
fb9bb5c8b5 remove unused method 2012-05-28 12:18:39 +01:00
Tiago Gomes
6034f7a264 refactor the function to reorder arguments 2012-05-28 12:17:47 +01:00
Tiago Gomes
1239832c21 refactor the way we calculate the product of two factors 2012-05-26 20:58:56 +01:00
Tiago Gomes
bc2da47804 add a new handy constructor to CutIndexer class 2012-05-26 20:56:41 +01:00
Tiago Gomes
918666d7f6 add a randomize function 2012-05-26 20:44:39 +01:00
Tiago Gomes
c1bd230e61 small improvement 2012-05-25 21:26:40 +01:00
Tiago Gomes
4b2ffee015 minor renaming 2012-05-25 21:22:48 +01:00
Tiago Gomes
2efca0c85a refactor indexer classes and receive te ranges as a constant reference 2012-05-25 21:16:08 +01:00
Tiago Gomes
5ff161b10f refactor functions for summing out 2012-05-25 20:15:05 +01:00
Tiago Gomes
df8a3c5fdc fix a recent bug in StatesIndexer.h 2012-05-25 14:36:52 +01:00
Tiago Gomes
a56bccf5e5 delete unused method 2012-05-24 23:39:38 +01:00
Tiago Gomes
18d4777d9a use PrvGroup 2012-05-24 23:38:44 +01:00
Tiago Gomes
af6601837c size_t invasion 2012-05-24 22:55:20 +01:00
Tiago Gomes
5124098b6c delete unused code 2012-05-24 16:21:41 +01:00
Tiago Gomes
acc5ab056a some refactorings 2012-05-24 16:14:13 +01:00
Tiago Gomes
444eaacc63 add operators to manipulate vectors of parameters 2012-05-24 14:55:30 +01:00
Tiago Gomes
6cb718942a some renamings 2012-05-23 21:23:03 +01:00
Tiago Gomes
d91e91b97e prefix calls to c++ functions with cpp_ 2012-05-23 20:34:57 +01:00
Tiago Gomes
2b896aecb4 add examples to the Makefile 2012-05-23 19:59:40 +01:00
Tiago Gomes
9f236dccdd rename bp.yap and fove.yap 2012-05-23 19:15:23 +01:00
Tiago Gomes
cf929b6f13 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-05-23 17:59:26 +01:00
Tiago Gomes
c04082dc2e move benchmarks one level up 2012-05-23 17:27:21 +01:00
Tiago Gomes
3890aafc1a update examples 2012-05-23 17:17:50 +01:00
Tiago Gomes
bdef49bb20 remove city old example 2012-05-23 15:57:00 +01:00
Tiago Gomes
efec94adff remove two unnecessary files 2012-05-23 15:55:39 +01:00
Tiago Gomes
584e363aa1 move graphical model examples 2012-05-23 15:48:03 +01:00
Tiago Gomes
5b38891c21 third try ... 2012-05-23 14:58:26 +01:00
Tiago Gomes
6c77afb3ae ok, second try 2012-05-23 14:56:01 +01:00
Tiago Gomes
a4d181eb97 update benchmarks 2012-05-23 12:40:34 +01:00
Tiago Gomes
7c3e4ed3ab improve log information 2012-05-23 12:26:14 +01:00
Vitor Santos Costa
9e3d16022a fix YAP_AttOfVar 
beautify get atts
 2012-05-21 17:24:40 +01:00
Tiago Gomes
16cb48fea4 decrease the time required to find an elimination order 2012-05-17 17:29:31 +01:00
Vítor Santos Costa
d68ef3f5a1 fix empty tries. 2012-05-17 09:56:49 +01:00
Tiago Gomes
cf9a7f1413 show the maximum memory used in the benchmarks 2012-05-16 12:31:58 +01:00
Tiago Gomes
5934d9efe9 update TODO 2012-05-16 00:44:59 +01:00
Tiago Gomes
23b180b6f0 merge TinySet and SortedVector classes 2012-05-16 00:41:01 +01:00
Tiago Gomes
354071c261 update scripts 2012-05-15 20:14:13 +01:00
Tiago Gomes
f7ba86d3ed kill Util::abort, s/vectorIndex/indexOf and s/isCarteesianProduct/isCartesianProduct 2012-05-15 19:41:14 +01:00
Tiago Gomes
db0d2c9772 refactor and increase the scope of parfactor multiplication 2012-05-15 19:05:39 +01:00
Tiago Gomes
f4bca3ceea factor overflow will not happen with bp 2012-05-15 19:02:40 +01:00
Tiago Gomes
7ec4887e77 refactor printing of a parfactor 2012-05-15 16:57:50 +01:00
Tiago Gomes
346b70145f improvements on shattering 2012-05-15 16:52:21 +01:00
Tiago Gomes
90e139f8f3 refactor ProbFormula comparation operator 2012-05-15 16:49:34 +01:00
Tiago Gomes
03f9df7dc3 fix a bug when checking of a set of log vars form a cartesian product 2012-05-15 16:46:21 +01:00
Tiago Gomes
1380adcfb5 support getting tuples of repeated log vars 2012-05-15 16:45:24 +01:00
Tiago Gomes
2061eefda2 add a way to copy a log var 2012-05-15 16:43:32 +01:00
Vitor Santos Costa
6c36a8ccd3 make it easier for outside packages to link with YAP innards. 2012-05-14 15:06:18 +01:00
Tiago Gomes
4ade4945a0 improve Util::abort 2012-05-07 17:52:47 +01:00
Tiago Gomes
aeb07d43a7 add two more utility functions 2012-05-07 17:48:15 +01:00
Tiago Gomes
9d5801ef7f ony summout a group of rand vars if they not appear in another position on the parfactor 2012-05-05 23:11:32 +01:00
Tiago Gomes
8e75ef3073 shatter parfactors also against themselves 2012-05-05 21:06:27 +01:00
Tiago Gomes
660e15e2ac update the overflow check in factors, still needs more work tbd 2012-05-04 14:28:07 +01:00
Tiago Gomes
0e01a51929 remove commented code and fix a warning 2012-05-04 14:10:00 +01:00
Tiago Gomes
35d0804f9a update TODO 2012-05-03 13:15:33 +01:00
Tiago Gomes
10ac7720f7 update smokers examples 2012-05-03 11:38:49 +01:00
Tiago Gomes
2bef3f6866 minor updates 2012-05-03 00:56:19 +01:00
Vítor Santos Costa
9b0b6ec649 fix stop_low_level_trace. 
P Moura request for (?).
 2012-05-02 10:09:26 +01:00
Tiago Gomes
92d8c7dcbe add more asserts 2012-04-30 17:49:07 +01:00
Tiago Gomes
ad50166bd0 fix bug in benchmarks script 2012-04-30 16:26:33 +01:00
Tiago Gomes
9971736a45 kill DEBUG constant, its not used any more 2012-04-30 14:50:14 +01:00
Tiago Gomes
7cf8c68e15 fix error message 2012-04-30 14:12:00 +01:00
Tiago Gomes
d6e11ca84d delete order vars flag 2012-04-30 13:02:53 +01:00
Tiago Gomes
fa8ff6d5b6 abort if the factor will become to bigger 2012-04-30 12:48:30 +01:00
Tiago Gomes
85fc4ae50a add missing files 2012-04-30 11:59:59 +01:00
Tiago Gomes
a90bfb7a86 update benchmarks 2012-04-30 11:24:04 +01:00
Tiago Gomes
2fa06da3c9 disable bayes ball for now 2012-04-30 11:20:02 +01:00
Tiago Gomes
185cbe9c73 update examples 2012-04-30 11:16:11 +01:00
Tiago Gomes
56475cacbc revamp debugging plataform 2012-04-29 20:07:09 +01:00
Tiago Gomes
d86e2c8386 don't raise counting log vars before multiplication 2012-04-28 01:10:04 +01:00
Tiago Gomes
1173b4c25b when expanding a counting formula, check if the expanded log vars are still counting log vars 2012-04-28 01:01:23 +01:00
Tiago Gomes
52f4aa0340 sort the parfactors by their parameters when printing 2012-04-27 19:10:22 +01:00
Vítor Santos Costa
067d6d3f4f fix problog experiment. 2012-04-27 16:30:02 +01:00
Vítor Santos Costa
5ee39c6f08 back to original version. 2012-04-27 16:20:40 +01:00
Vítor Santos Costa
6bb4db125d fix names. 2012-04-27 15:33:32 +01:00
Vítor Santos Costa
60184e230d new lbdd stuff. 2012-04-27 15:32:57 +01:00
Vítor Santos Costa
ceb0c1f5ac new support file. 2012-04-27 15:32:17 +01:00
Vítor Santos Costa
823066f9da use library for learning. 2012-04-27 15:30:39 +01:00
Vítor Santos Costa
fd4bf21ece fix file names. 2012-04-27 15:26:44 +01:00
Tiago Gomes
20fc2c8dd1 add debug information to variable elimination 2012-04-27 14:48:48 +01:00
Tiago Gomes
9e1a649262 raising the paramaters to some power should happen after summing out, not before 2012-04-27 14:47:30 +01:00
Tiago Gomes
7599ccd5a1 don't print the paramaters if they are more than 32 2012-04-27 01:19:28 +01:00
Tiago Gomes
af063dcda8 be more precise when calculating the cost of grounding a log var in a formula 2012-04-27 01:18:54 +01:00
Tiago Gomes
995a11be83 improvements in the way we align logical variables 2012-04-26 18:00:06 +01:00
Vítor Santos Costa
fd755f0b7e allow ProbLog to use lbdd. 2012-04-26 13:52:09 +01:00
Tiago Gomes
cc09e77707 remove unnecessary variable 2012-04-26 00:58:06 +01:00
Tiago Gomes
689244a0d8 improve cbp by supporting factors connected to a single var two or more times 2012-04-26 00:54:06 +01:00
Tiago Gomes
ad24a360ce Add a way to summout a dimension given a index instead of a variable id. 
This is required for counting belief propagation.
 2012-04-25 22:59:01 +01:00
Tiago Gomes
fc362fe123 reorder the parameters instead of reordering variables 2012-04-23 22:57:04 +01:00
Tiago Gomes
0ebd6d6e06 improve constructor of VarNode 2012-04-23 22:40:36 +01:00
Tiago Gomes
3397f694fe sort the variable ids when printing all posterioris 2012-04-23 22:12:04 +01:00
Vitor Santos Costa
f24bf2e2cd full school 2012-04-23 07:13:58 -05:00
Vitor Santos Costa
32a905bc8b ddnnf support 2012-04-23 07:13:25 -05:00
Vitor Santos Costa
040c1c7fa7 more ddnnf stuff 2012-04-23 07:13:01 -05:00
Tiago Gomes
d90fcd532b minor update 2012-04-21 17:21:54 +01:00
Tiago Gomes
8c689665a0 support setting flags in horus cli and fix a bug when ordering the variables 2012-04-21 17:14:19 +01:00
Vitor Santos Costa
22f702f8e4 ddnnfs. 2012-04-20 16:43:30 -05:00
Vitor Santos Costa
220f7e6efc support mtbdds. 2012-04-20 16:42:59 -05:00
Tiago Gomes
085ebe1e96 check for overflows when performing expansion 
case the factor size after expansion be bigger than an unsigned integer, abort the program
 2012-04-20 17:16:10 +01:00
Tiago Gomes
0ffa409a80 fix a bug when expanding potential 2012-04-20 14:50:14 +01:00
Vitor Santos Costa
178ad27db8 better understanding of ddnnf. 2012-04-20 07:07:19 -05:00
Tiago Gomes
09697b8461 heuristic to improve results with fove 2012-04-19 18:37:15 +01:00
Tiago Gomes
2b7da4bc23 refactor the way we calculate the grounding cost 2012-04-19 17:59:45 +01:00
Tiago Gomes
661ce08961 check if the factor is not zero when choosing the elimination order 2012-04-19 12:08:27 +01:00
Tiago Gomes
cd1e157019 sort the colors in the signature receveied from a factor (add std namespace) 2012-04-18 19:29:43 +01:00
Tiago Gomes
7c100c96bc sort the colors in the signature receveied from a factor 2012-04-18 19:29:11 +01:00
Tiago Gomes
862e90a36b fix bug in joining constraint trees 2012-04-18 18:14:15 +01:00
Tiago Gomes
61ee95d92a use logarithms to calculate the cost of each fove operator 2012-04-18 16:40:12 +01:00
Tiago Gomes
406276b62b add missing scripts 2012-04-18 13:53:34 +01:00
Tiago Gomes
a7f57bea99 several optimizations on ConstraintTree 2012-04-18 03:05:01 +01:00
Tiago Gomes
cd720497f8 update groups when shattering 2012-04-18 03:04:06 +01:00
Tiago Gomes
bb5d02dbc0 minor updates 2012-04-18 03:03:29 +01:00
Tiago Gomes
dacf6b4e57 update examples 2012-04-18 02:57:24 +01:00
Tiago Gomes
d22b5a97fd add missing scripts 2012-04-18 02:52:31 +01:00
Tiago Gomes
b7e9245f26 refactor and add more benchmarks scripts 2012-04-18 02:49:33 +01:00
Tiago Gomes
d8e757f9ab improvements in the way factorials are computed 2012-04-18 02:46:38 +01:00
Tiago Gomes
cd8714460e add a way of calculate factorials of large numbers 2012-04-17 20:24:40 +01:00
Tiago Gomes
f02d0fb798 add more api to sorted vector implementation 2012-04-17 19:02:56 +01:00
Vítor Santos Costa
40ce9feb76 bdd experiments 2012-04-16 23:47:36 +01:00
Tiago Gomes
5e88510a7d use convenience function 2012-04-16 21:48:13 +01:00
Tiago Gomes
6ab5a4668b change align of some functions 2012-04-16 21:47:06 +01:00
Tiago Gomes
dd0ae564ef adapt to changes in CFactorGraph 2012-04-16 21:45:52 +01:00
Tiago Gomes
779f4ea2ce fix debuging information and s/ds/range 2012-04-16 21:44:04 +01:00
Tiago Gomes
66353e67ec some refactorings 2012-04-16 21:42:14 +01:00
Tiago Gomes
0d5888e238 assign evidence to the pruned factor graph 2012-04-16 21:40:28 +01:00
Tiago Gomes
b27500e93f add nrVarNodes and nrFacNodes 2012-04-16 19:29:55 +01:00
Tiago Gomes
6f7d2af718 add another sorted vector implementation 2012-04-15 21:51:12 +01:00
Tiago Gomes
c32ad3de0a use a sorted vector to store the node childs 2012-04-15 21:44:27 +01:00
Tiago Gomes
5e7b660f44 use iterators instead off indices 2012-04-15 03:19:15 +01:00
Vítor Santos Costa
c385dc13a8 fix syntax 2012-04-15 00:02:37 +01:00
Tiago Gomes
62fedf014b workaround garbage collector error 2012-04-14 18:00:12 +01:00
Tiago Gomes
f1d2889eaa fix warning about uninitialized var 2012-04-14 17:59:04 +01:00
Tiago Gomes
401ad145a5 improve the way the factor graph is constructed from a set from factors 2012-04-14 17:57:24 +01:00
Tiago Gomes
f6e3bb4481 don't assert when suming numbers with negative infinity 2012-04-13 23:12:12 +01:00
Tiago Gomes
24a5fe9c23 add typedef 2012-04-13 15:56:37 +01:00
Tiago Gomes
05ef8610f4 fix warning 2012-04-13 15:47:41 +01:00
Tiago Gomes
00faccd940 implement a printSolverParameters in ground solvers 2012-04-13 15:22:24 +01:00
Tiago Gomes
f3be68a552 add a way to print bool vars 2012-04-13 15:21:11 +01:00
Tiago Gomes
15c8f3abc6 ops 2012-04-12 18:46:21 +01:00
Tiago Gomes
5348c4a989 comment debug information in some prolog files 2012-04-12 18:35:29 +01:00
Vítor Santos Costa
5a8cc421d2 small pfl fixes. 2012-04-12 18:11:29 +01:00
Vítor Santos Costa
c5f42cd7eb more pfl changes. 2012-04-12 17:24:39 +01:00
Vítor Santos Costa
8c2dd1f847 fix bad call for parameters. 2012-04-12 17:17:21 +01:00
Vítor Santos Costa
28ce2da3dc Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-04-12 17:07:19 +01:00
Tiago Gomes
9def6c2b15 tempary hack to fix cbp and clean in benchs.sh 2012-04-12 00:42:55 +01:00
Tiago Gomes
564958ef8d improvements on benchmarkings 2012-04-11 23:48:59 +01:00
Tiago Gomes
03013960d3 refactor the city benchmarks and introduce set_solver/1 2012-04-11 19:15:52 +01:00
Tiago Gomes
f2fbbf29d8 rework the examples and erase the city network in the old format 2012-04-11 15:36:50 +01:00
Tiago Gomes
8697fcd2b4 refactorings 2012-04-10 20:43:08 +01:00
Tiago Gomes
78e86a6330 refactor ground solver interface 2012-04-10 15:00:18 +01:00
Tiago Gomes
46e6a10625 convert city dataset to new format 2012-04-10 12:56:14 +01:00
Tiago Gomes
b52dc99914 refactorings 2012-04-10 12:53:52 +01:00
Tiago Gomes
aa1b2e40ea some renamings 2012-04-10 11:51:56 +01:00
Tiago Gomes
6986e8c0d7 Improvements 
Factor nodes now contain a factor object instead of a pointer. Refactor the way .fg and .uai formats are readed.
 2012-04-09 15:40:51 +01:00
Tiago Gomes
f1d52c0389 add missing files 2012-04-05 23:04:27 +01:00
Tiago Gomes
d1b25f0864 renamings and delete bn_bp stuff 2012-04-05 23:00:48 +01:00
Tiago Gomes
b28ee8fb3a drop bayesian network representation 2012-04-05 20:08:54 +01:00
Tiago Gomes
abb0410d07 drop suport for Pearl belief propagation 2012-04-05 19:34:37 +01:00
Tiago Gomes
0d23591058 Add support to markov networks 2012-04-05 18:38:56 +01:00
Vítor Santos Costa
bc2364c5dc small fixes 2012-04-04 08:29:20 +01:00
Tiago Gomes
6c3add2ebd first steps in adapting horus ground solvers to pfl 2012-04-03 19:53:27 +01:00
Vítor Santos Costa
2bdec8f725 more PFL fixes. 2012-04-03 17:12:58 +01:00
Vítor Santos Costa
14d142aa10 new example. 2012-04-03 16:23:26 +01:00
Vítor Santos Costa
65e0c3b2a2 more PFL changes. 2012-04-03 16:22:40 +01:00
Vítor Santos Costa
6ccd458ea5 Merge branch 'master' of https://github.com/tacgomes/yap6.3 
Conflicts:
	packages/CLPBN/clpbn/bp.yap
	packages/CLPBN/clpbn/fove.yap
	packages/CLPBN/clpbn/horus.yap
 2012-04-03 15:07:22 +01:00
Vítor Santos Costa
44cb6abcb6 PFL support. 2012-04-03 15:01:35 +01:00