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2066 Commits

Author SHA1 Message Date
Tiago Gomes
bd84949f09 Trivial 2013-01-10 17:23:09 +00:00
Tiago Gomes
1bb1138b3a Fix EM typos 2013-01-10 13:45:24 +00:00
Vitor Santos Costa
b7ef6576a6 add keys within learning 2013-01-09 18:34:19 +00:00
Vitor Santos Costa
6cee85bd60 fix cases where you get repeated keys or a(X,X) keys in PFL. 2013-01-09 18:22:01 +00:00
Vitor Santos Costa
46fbc539bf handle repeated query vars with evidence 2013-01-09 17:49:07 +00:00
Vitor Santos Costa
ff953eb20a Merge branch 'master' of https://github.com/tacgomes/yap6.3 2013-01-09 16:48:16 +00:00
tacgomes
2feac46e54 PFL manual: several improvements 2013-01-09 16:45:01 +00:00
tacgomes
7f452d2397 Refactor the benchmarks 2013-01-09 15:25:14 +00:00
tagomes@fc.up.pt
7fabfcf4c9 Trivial 2013-01-09 11:43:40 +00:00
Tiago Gomes
24271157ce Clean unecessary latex documents 2013-01-08 22:55:27 +00:00
Tiago Gomes
59ae52623c PFL manual: several improvements 2013-01-08 22:51:44 +00:00
Tiago Gomes
6755e50525 PFL manual: small improvements 2013-01-08 22:00:31 +00:00
Tiago Gomes
ea054468bc Improve hcli usage string 2013-01-08 21:17:56 +00:00
Tiago Gomes
dc536fabc2 Beautify setHorusFlag 2013-01-08 21:13:58 +00:00
Tiago Gomes
2738d83302 Remove some alias for hve 2013-01-08 20:48:46 +00:00
Tiago Gomes
dfd7360291 Allow the use of solver as an alias of ground_solver 2013-01-08 20:47:12 +00:00
Tiago Gomes
dbd35a20a2 PFL manual: improve introduction section 2013-01-08 19:40:20 +00:00
Tiago Gomes
9c8fd804df PFL manual: add a further information section 2013-01-08 19:39:39 +00:00
Tiago Gomes
f94032d06c PFL manual: add an installation section 2013-01-08 19:39:03 +00:00
Tiago Gomes
1b9c4e96e7 Prefix with bp_ some bp flags 2013-01-08 17:06:40 +00:00
Tiago Gomes
da0514a779 Add support for more infernce keys. 
Add support for export_libdai, export_uai, export_gv and print_fg.
Document these keys.
 2013-01-08 17:01:03 +00:00
Tiago Gomes
4220069d90 PFL manual: use the Unix end-of-line marker 2013-01-08 15:34:56 +00:00
Tiago Gomes
75b652b0c9 PFL manual: improve title page and reword a sentence 2013-01-08 15:33:55 +00:00
Tiago Gomes
6375d05a93 PFL manual: add section for horus cli 2013-01-08 15:31:52 +00:00
Tiago Gomes
182429252e Update the usage string for hcli 2013-01-08 14:47:21 +00:00
Tiago Gomes
c92b7c3e7e Install hcli to the bin directory 2013-01-08 00:33:01 +00:00
Tiago Gomes
f598881cc5 Explain better the potential value order 2013-01-07 22:21:52 +00:00
Tiago Gomes
9bb43360a2 Rearrange the probabilities to do a clean diff against the exported model 2013-01-07 22:18:50 +00:00
Tiago Gomes
ba32ebc5f5 Add support for bayesian networks defined in an UAI file format 2013-01-07 22:17:05 +00:00
Tiago Gomes
82a4cc508b Change burglary-alarm.uai to be bayes instead of markov 2013-01-07 22:01:49 +00:00
Tiago Gomes
bafd7320a5 Rework a bit the examples 2013-01-07 14:59:51 +00:00
Tiago Gomes
91dbd60ad4 Allow calling set_horus_flag/2 without loading clpbn_horus 2013-01-07 14:05:56 +00:00
Tiago Gomes
96f4e7ea1b Fix typo 2013-01-07 14:04:44 +00:00
David Vaz
cdc15e8cd8 merge with yap-6.3 2013-01-06 20:09:48 +00:00
Tiago Gomes
ec2d9e0967 Trivial 2013-01-05 12:04:43 +00:00
Tiago Gomes
f0768e76f2 Improve Makefile 2013-01-05 01:02:19 +00:00
Tiago Gomes
f55ccdef33 Add a manual for PFL written in Latex 2013-01-05 00:49:39 +00:00
Tiago Gomes
c5a390460d Chanse use_logarithms default to true. 
Reasoning:
- In small networks, the use of logarithms is not noticed in terms of performance.
- In large networks, the chance to have a division by 0 is too high when not using logarithms.
 2013-01-04 19:48:31 +00:00
Tiago Gomes
f2682374fb Forgot to update the Makefile in the previous commit 2013-01-04 15:42:03 +00:00
Tiago Gomes
3347f0e676 Rename two examples 2013-01-03 23:44:30 +00:00
Tiago Gomes
d4d11cd4b4 Fix sprinkler probability order 2013-01-03 18:48:15 +00:00
Tiago Gomes
ea5dbe2bca Trivial 2013-01-03 18:26:12 +00:00
Tiago Gomes
d293c5e5a9 Trivial 2012-12-28 15:40:32 +00:00
Tiago Gomes
3363019c93 Remove unnecessary methods 2012-12-28 01:35:59 +00:00
Tiago Gomes
7d9af75c35 Improve solver flags 2012-12-27 23:21:32 +00:00
Tiago Gomes
d36b63ece3 Trivial 2012-12-27 22:29:20 +00:00
Tiago Gomes
c96496720b Trivial 2012-12-27 22:28:19 +00:00
Tiago Gomes
485c3e34b2 Use more DISALLOW_COPY_AND_ASSIGN 2012-12-27 22:25:45 +00:00
Tiago Gomes
7b7f663ac6 Don't use public members for solver flags 2012-12-27 15:44:40 +00:00
Tiago Gomes
b996436b24 Reorganize 2012-12-27 15:05:40 +00:00
Tiago Gomes
de0a118ae5 Move belief propagation stuff out from Horus.h 2012-12-27 15:00:30 +00:00
Tiago Gomes
cbea630fbf Cosmetic fixes 2012-12-27 12:54:58 +00:00
David Vaz
e6c2fa30ee Added uthash to store indexed predicates info 2012-12-27 12:11:14 +00:00
Tiago Gomes
8bdcb65907 Improve variable elimination 2012-12-26 22:55:48 +00:00
Tiago Gomes
188f359496 Fix a warning about a unitialized var 2012-12-26 21:48:05 +00:00
Tiago Gomes
d8c5725b2e This shouldn't be on the repository 2012-12-21 15:20:28 +00:00
Tiago Gomes
4b901d26d7 Improve error messages 2012-12-20 23:34:53 +00:00
Tiago Gomes
01d8f8e178 More whitespace cleanups 2012-12-20 23:19:10 +00:00
Vítor Santos Costa
3565a01f1e upstream 2012-12-20 21:41:06 +00:00
Tiago Gomes
421d6f72ee Place the constructor on the right place 2012-12-20 21:32:40 +00:00
Vitor Santos Costa
4098b9b964 fix compilation MT in win32 2012-12-20 21:15:01 +00:00
Tiago Gomes
57339760b9 Merge LiftedKc and LiftedCircuit in one file 2012-12-20 21:11:51 +00:00
Tiago Gomes
b44ed7db39 Improve the error messages 2012-12-20 18:07:50 +00:00
Tiago Gomes
685f46dc27 Fix 2012-12-20 17:41:52 +00:00
Tiago Gomes
053fa31bb2 Exit is better than abort. 
Also use a macro instead of integer to indicate failure.
 2012-12-20 17:37:59 +00:00
David Vaz
4efa594f0a UDI: more work 2012-12-20 17:13:30 +00:00
Tiago Gomes
2ca31ca14a Don't abort if opening a file to export to graphviz fails 2012-12-20 17:11:11 +00:00
Tiago Gomes
af8497af6e Sort the logical vars of the constraint tree when exporting to graphviz 2012-12-20 16:20:38 +00:00
David Vaz
a655c0bb51 Rtree working as a plugin in UDI 2012-12-20 10:21:55 +00:00
Tiago Gomes
046af409ba Change the default solver to be hve 2012-12-19 18:25:47 +00:00
Tiago Gomes
c407594146 Whitespace clean 2012-12-19 18:22:47 +00:00
Tiago Gomes
60ff9daafd Remove old example 2012-12-19 18:13:47 +00:00
Tiago Gomes
48254ba7d7 Lkc: fix some memory leaks 2012-12-19 17:45:53 +00:00
Tiago Gomes
2d1f5edc91 There is no more to do 2012-12-18 23:52:56 +00:00
Tiago Gomes
691188d5c9 Handle better formulas like f(X,X) 2012-12-18 23:51:51 +00:00
Tiago Gomes
0a661b0462 More cleanups 2012-12-18 22:47:43 +00:00
David Vaz
43e459b8f8 Changes Rtree so almost working 2012-12-18 18:26:59 +00:00
Tiago Gomes
4b0acbf8c1 Cleanups 2012-12-18 12:11:45 +00:00
Tiago Gomes
c7a4adcefb Fix finalizing horus ground solvers on EM 2012-12-17 23:59:52 +00:00
Tiago Gomes
5fa5dda579 Remove BP from clpbn interface to EM 2012-12-17 23:29:21 +00:00
Tiago Gomes
e1c862ebbe Refactor the way we set the inference solver 2012-12-17 23:14:54 +00:00
Tiago Gomes
f1499f99f3 Introduce set_em_solver and use it 2012-12-17 21:19:47 +00:00
Tiago Gomes
40a72a0a63 Improve error handling for choosing EM solver 2012-12-17 21:03:13 +00:00
David Vaz
8511e87e32 packages udi as module 2012-12-17 20:29:59 +00:00
David Vaz
bd25c61fbf New work on UDI 2012-12-17 20:23:03 +00:00
Tiago Gomes
9861f4aadb Is the EM solver that we want 2012-12-17 18:50:36 +00:00
Tiago Gomes
3eb6b76ddd Whitespace clean 2012-12-17 18:39:42 +00:00
Tiago Gomes
2f2f88e571 Several whitespace fixes 2012-12-17 17:57:00 +00:00
Tiago Gomes
409a230826 Use the same convetion for module import and export 2012-12-17 14:50:12 +00:00
Tiago Gomes
2738c0fb56 Use tabs instead of spaces for consistency 2012-12-17 12:13:08 +00:00
Tiago Gomes
d03ea1509e Trivial 2012-12-17 11:56:15 +00:00
Tiago Gomes
e35cf51476 Reorders and some reindentation 2012-12-17 11:53:57 +00:00
Tiago Gomes
9ff9be2f49 Don't pass around the Solver for EM 2012-12-15 16:11:03 +00:00
Tiago Gomes
81ac6f1913 Don't pass around the Solver in run_horus_ground_solver 2012-12-15 15:56:05 +00:00
Tiago Gomes
ea931f2f93 Comment 2012-12-15 00:41:00 +00:00
Tiago Gomes
55292ab745 Clean ups and don't forget cbp 2012-12-15 00:29:03 +00:00
Tiago Gomes
1174486576 VE??? 2012-12-15 00:16:06 +00:00
Tiago Gomes
2996a0b8b3 Comment does not apply 2012-12-15 00:14:45 +00:00
Tiago Gomes
e5479ff17c CLPBNs first, PFLs next 2012-12-15 00:13:53 +00:00
Tiago Gomes
6c95c50eb4 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-12-14 14:05:22 +00:00
Vitor Santos Costa
84b0529060 improve prism compatibility (fix asia). 2012-12-14 08:26:56 +00:00
Tiago Gomes
971b8b7487 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-12-13 23:48:16 +00:00
Tiago Gomes
eea7ce2885 Fix file names 2012-12-13 19:02:04 +00:00
Tiago Gomes
0594d43539 Cosmetic fixes 2012-12-13 17:51:43 +00:00
Tiago Gomes
05e53eaf37 Merge sch32 and school32_data and rename to school_32 2012-12-13 17:08:54 +00:00
Tiago Gomes
6b8301d9c4 CLP(BN) is dead. Long live the PFL 2012-12-13 17:04:14 +00:00
Tiago Gomes
d78baa48a1 Don't special case the tables in city.pfl 
Its hard to make them work in lifted networks
:
 2012-12-13 16:50:39 +00:00
Vitor Santos Costa
c4448d066a allow backtracking over possible values of constraints.a 2012-12-13 15:53:01 +00:00
Tiago Gomes
8b996c5dc9 Lkc: show that we exported the circuit to graphviz when debugging 2012-12-13 14:21:16 +00:00
Tiago Gomes
48413deae7 Ops: deleted this by accident in the previous commit 2012-12-13 14:08:16 +00:00
Tiago Gomes
dd8a92aaf3 Merge with upstream code 2012-12-13 12:55:55 +00:00
Tiago Gomes
11e688ffd7 Lkc: use utility function 2012-12-12 21:19:22 +00:00
Tiago Gomes
f2173d001e Lkc: fix bug when adding weights 2012-12-12 21:16:36 +00:00
Tiago Gomes
c7588c9361 Trivial 2012-12-12 17:03:11 +00:00
Tiago Gomes
4683d30d8e Trivial 2012-12-12 17:01:30 +00:00
Tiago Gomes
39bf95fe2b trivial 2012-12-12 16:28:18 +00:00
Tiago Gomes
8eb657aec2 Change extension of school parschema to pfl 2012-12-12 16:00:21 +00:00
Tiago Gomes
0f46c97481 Trivial 2012-12-12 15:47:09 +00:00
Tiago Gomes
e66ff6777c Be consistent: constraint is always on top 2012-12-12 15:41:41 +00:00
Tiago Gomes
66cd58655b Place the debug_school predicate into a different file 2012-12-12 15:36:38 +00:00
Tiago Gomes
01dfc5e2be Change extension of school_params 
school_params does not define any pfl network, so it shouldn't have pfl as the extension
 2012-12-12 15:26:49 +00:00
Tiago Gomes
108e310a0f Rework the learning examples 2012-12-12 15:16:30 +00:00
Tiago Gomes
f128b6de7a school_32 should use clp(bn) 2012-12-12 00:27:32 +00:00
Tiago Gomes
27a235f65b Remove text explaning pfl. 
The text is badly written and explanaing pfl shouldn't be in *.pfl files, but rather in paper or README file
 2012-12-11 23:36:10 +00:00
Tiago Gomes
4310e42562 rework examples 2012-12-11 23:06:09 +00:00
Tiago Gomes
ccba2d4177 update Makefile to reflect the change of extension to .pfl 2012-12-11 21:02:26 +00:00
Tiago Gomes
1641d1fa30 Remove files that souldn't be in the repository 2012-12-11 16:22:38 +00:00
Tiago Gomes
47bc8f22fc Examples: sprinker was converted from clpbn to pfl 2012-12-11 16:20:55 +00:00
Tiago Gomes
d8a7b7aad6 Examples: change extension to pfl 2012-12-11 16:19:59 +00:00
Tiago Gomes
a59c152962 Lkc: Fix smoothing in atom counting nodes 2012-12-11 16:02:48 +00:00
Tiago Gomes
bb68afe91d Fix an error caused by a temporary being out of scope 2012-12-11 15:52:20 +00:00
Tiago Gomes
1d732594e2 smooth circuit 
Smooth the circuit independent of the verbosity level, but don't smooth it when the compilation has fail.
 2012-12-10 19:39:09 +00:00
Tiago Gomes
8371e395dd fix typo 2012-12-10 19:37:41 +00:00
Tiago Gomes
a25f4584c8 support printing LitLvTypes objects 2012-12-10 18:48:54 +00:00
Tiago Gomes
9c8827c309 always copy clauses for backup 2012-12-09 22:57:39 +00:00
Tiago Gomes
90736156ae some clean ups 2012-12-09 22:13:58 +00:00
Tiago Gomes
e46d2177b7 rework a bit the test infrastructure for lkc 2012-12-09 22:04:33 +00:00
Tiago Gomes
907144db32 don't use a stack for atom counting operator 2012-12-09 19:46:14 +00:00
Tiago Gomes
57a31c2c36 fix showing the weights on edge labels when there is a SetOrNode ancestor 2012-12-09 17:33:36 +00:00
Tiago Gomes
59f653aabd move implementation of copyClauses to another file 2012-12-08 19:32:19 +00:00
Tiago Gomes
4edbcf86b8 Use pointers to refer to clauses for better performance 2012-12-08 19:17:19 +00:00
Vítor Santos Costa
354dbbf802 follow pldoc 2012-12-08 10:52:39 +00:00
Tiago Gomes
73b3594c97 lifted kc: when not debuging don't keep track of the origin clauses 2012-12-07 11:47:50 +00:00
Vitor Santos Costa
b98b09e7de improve utf-8 2012-12-07 08:10:21 +00:00
Vitor Santos Costa
a813a13412 mysqldb interface vs Prolog 2012-12-04 14:49:29 +00:00
Vitor Santos Costa
36ae500118 fixes 2012-12-03 12:39:25 +00:00
Vítor Santos Costa
d9d954abe1 fix handling of methods and classes with named objects: just use PyObject_Call() 2012-12-02 13:19:10 +00:00
Vitor Santos Costa
3c0e16030c imprive python interface 2012-12-01 14:28:25 +00:00
Tiago Gomes
ee1b7dcd21 abort when compilation failed 2012-11-27 16:54:02 +00:00
Vitor Santos Costa
683032432c more examples 2012-11-27 13:50:18 +00:00
Vítor Santos Costa
e529e79582 more progress 2012-11-27 12:10:41 +00:00
Vitor Santos Costa
f1874ecec0 inprove python interface. 2012-11-27 00:16:34 +00:00
Tiago Gomes
610e55a4a2 Improve debbuging for lifted knowledge compilation 2012-11-26 14:46:45 +00:00
Tiago Gomes
1f1d194326 remove unnecessary std set 2012-11-26 14:46:00 +00:00
Tiago Gomes
a2429a1eec Merge branch 'master' of github.com:tacgomes/yap6.3 2012-11-26 11:48:24 +00:00
Vítor Santos Costa
57ac65c83b new swi version. 2012-11-25 23:48:41 +00:00
Vítor Santos Costa
e470dfcdc7 more python stuff. 2012-11-25 23:37:28 +00:00
Vitor Santos Costa
d5b97ac15e quoting. 2012-11-24 12:23:00 +00:00
Tiago Gomes
e09c25bd59 remove grounding stub form lifted knowledge compilation. its hard to implement 2012-11-22 16:34:24 +00:00
Tiago Gomes
4afe6c8161 refactor horus_ground and horus_lifted 2012-11-22 16:33:22 +00:00
Tiago Gomes
992d06656d refactor horus_ground.yap 2012-11-22 15:54:30 +00:00
Vitor Santos Costa
027632456a Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-11-22 12:29:37 +00:00
Vitor Santos Costa
bb4d75f428 avoid messing up lifted solvers 2012-11-22 12:27:33 +00:00
Tiago Gomes
85db763d9c small improvement in HorusYap 2012-11-16 22:38:14 +00:00
Tiago Gomes
51eef45b2d refactor HorusYap 2012-11-16 17:10:04 +00:00
Tiago Gomes
59fd21bf33 use only 1 lifted solver instance 2012-11-16 16:50:19 +00:00
Tiago Gomes
c2791748d2 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-11-16 00:57:41 +00:00
Vitor Santos Costa
114a6732f0 add_factor should succeed if Constraints are satisfied 2012-11-15 17:28:57 +00:00
Tiago Gomes
51fd48cd46 Ouchgit statusgit status! forgot to add these to index 2012-11-14 23:17:39 +00:00
Tiago Gomes
4522850cd6 one step close to use one solver instatiation to solve several queries 2012-11-14 23:13:46 +00:00
Tiago Gomes
b673dfd462 fix type in an example 2012-11-14 23:12:03 +00:00
Tiago Gomes
64a27847cc Introduce a lifted solver class 2012-11-14 21:55:51 +00:00
Tiago Gomes
6e7d0d1d0a remove old TODOs 2012-11-14 21:17:04 +00:00
Tiago Gomes
cad22da9f5 fixes & cleanups 2012-11-14 21:05:55 +00:00
Tiago Gomes
d9e48e6290 log domain calculations fixes for lifted knowledge compilation 2012-11-14 18:40:03 +00:00
Vitor Santos Costa
416b407faa fixes i r..eal 2012-11-14 16:00:35 +00:00
Tiago Gomes
9202e286f8 IncExc: check if log vars are count normalized 2012-11-14 14:43:56 +00:00
Tiago Gomes
f5c85ffcc9 shatter agains the query in lifted knowledge compilation 2012-11-12 15:20:42 +00:00
Tiago Gomes
4776817603 move more code around 2012-11-10 00:18:20 +00:00
Tiago Gomes
07bcc89a76 factor out some lifted operations in a new class 2012-11-09 23:52:35 +00:00
Tiago Gomes
8ab622e0aa more work to support inference with lifted knowledge compilation 2012-11-09 18:42:21 +00:00
Tiago Gomes
c53220aa61 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-11-09 16:29:24 +00:00
Tiago Gomes
6a200760ca initial code to support calling a lifted knowledge compilation solver 2012-11-08 21:54:47 +00:00
Tiago Gomes
0ed89d3eeb add flag to lifted knowledge compilation and s/fove/lve 2012-11-08 15:05:48 +00:00
Tiago Gomes
a8c4f4fc52 fix one more TODO 2012-11-08 14:02:18 +00:00
Tiago Gomes
f7db522c6c InxExc: improve the code 2012-11-07 23:45:43 +00:00
Tiago Gomes
6db4d37684 Independence: consider also counted log vars 2012-11-07 21:21:42 +00:00
Tiago Gomes
d2ae171bb5 Improve Clause constructor 2012-11-07 18:43:13 +00:00
Tiago Gomes
278f8f77f5 Improve independence 2012-11-07 18:42:11 +00:00
Tiago Gomes
07c6509a79 cleanups, refactorings & renamings 2012-11-07 15:28:33 +00:00
Tiago Gomes
83c1e58674 clean ups 2012-11-07 12:37:22 +00:00
Tiago Gomes
b599b45bc6 AC: only allow one counting node per branch 2012-11-06 23:56:52 +00:00
Tiago Gomes
829f2248ee use utility method 2012-11-06 23:39:18 +00:00
Tiago Gomes
06a59ad659 IPG: verify that the root log vars appear in the same positions 2012-11-06 23:35:14 +00:00
Tiago Gomes
1e38743462 fix ipgCandidates 2012-11-06 16:24:59 +00:00
Tiago Gomes
869d513c1a remove and add some TODOs 2012-11-06 15:57:54 +00:00
Tiago Gomes
5e1547ba78 add missing method to TinySet 2012-11-06 15:15:55 +00:00
Tiago Gomes
ab334f82b2 fix weighted model counting in atom counting nodes 2012-11-06 14:16:04 +00:00
Vítor Santos Costa
06b915d568 more functionality 2012-11-05 13:49:15 +00:00
Tiago Gomes
4518a3db5d support smoothing on atom counting nodes (beta) 2012-11-04 18:02:40 +00:00
Vítor Santos Costa
eb63f30ab2 update version 2012-11-03 13:58:20 +00:00
Vítor Santos Costa
bf956ca639 python interface as a separate package 2012-11-02 22:37:27 +00:00
Tiago Gomes
b8cef8798a fix warning produced by new version of gcc 2012-11-01 22:54:14 +00:00
Tiago Gomes
a1d0deb638 support model counting on atom couting nodes - still untested 2012-11-01 22:34:28 +00:00
Tiago Gomes
d4912ea219 some reorders 2012-11-01 13:56:12 +00:00
Vitor Santos Costa
afc0c4c5a2 new version 2012-11-01 08:31:58 +00:00
Tiago Gomes
bfa9648067 clean up 2012-10-31 23:58:07 +00:00
Tiago Gomes
6877be897e first stab for atom counting 2012-10-31 23:43:39 +00:00
Tiago Gomes
e762d6be22 tweak colors 2012-10-30 16:00:20 +00:00
Tiago Gomes
77ef7b87cd support smoothing in inclusion-exclusion nodes 2012-10-30 15:48:19 +00:00
Tiago Gomes
b31a047635 refactor exportToGraphViz 2012-10-30 14:31:52 +00:00
Tiago Gomes
a75799b34f small improvements 2012-10-30 12:41:00 +00:00
Tiago Gomes
864f764391 support model counting in inc-exc nodes 2012-10-30 01:51:10 +00:00
Tiago Gomes
8b77b93a3b add support for inclusion-exclusion 2012-10-30 00:21:10 +00:00
Tiago Gomes
b6df8a66b1 add assignement operator to ConstraintTree 2012-10-30 00:15:40 +00:00
Tiago Gomes
d07ea73050 add projectedCopy 2012-10-29 21:37:58 +00:00
Tiago Gomes
324ea1a96c make independent partial ground suck less 2012-10-29 20:49:21 +00:00
Tiago Gomes
c2b1434969 show weights in dot file and add support for smoothing set-and nodes 2012-10-29 15:39:56 +00:00
Tiago Gomes
fbc44ba17d improments in exportToGraphViz 2012-10-29 13:49:11 +00:00
Vitor Santos Costa
eb79049bdb more improvements to interface 2012-10-28 18:22:09 +00:00
Tiago Gomes
d074ca9a8f add initial independent partial grounding support 2012-10-27 00:13:11 +01:00
Vitor Santos Costa
f33fe61ada more support. 2012-10-26 00:24:07 +01:00
Tiago Gomes
68ef63207f initial support for weighted model countign 2012-10-25 12:22:52 +01:00
Vítor Santos Costa
ea3f2f13e9 improve python interface 2012-10-25 00:33:02 +01:00
Tiago Gomes
eac6b954a8 add inital smoothing of the circuit 2012-10-24 21:22:49 +01:00
Tiago Gomes
0cfc64d068 update TODO 2012-10-24 16:24:49 +01:00
Vítor Santos Costa
d2da55463f more python fixes. 2012-10-23 10:18:24 +01:00
Vítor Santos Costa
0caac30c11 support lists 2012-10-23 10:16:32 +01:00
Vitor Santos Costa
84a5f518bf fix Makefile trouble 2012-10-23 09:06:38 +01:00
Vítor Santos Costa
b272205707 odbc and archive 2012-10-23 00:45:13 +01:00
Tiago Gomes
a8926fe38b inital code for lifted knowledge compilation 2012-10-22 23:01:13 +01:00
Vitor Santos Costa
f189784510 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-10-22 22:04:38 +01:00
Vítor Santos Costa
6bfd5bbe54 new version. 2012-10-22 21:39:45 +01:00
Vitor Santos Costa
32a01a5bf6 :new SWI modules. 2012-10-22 18:16:52 +01:00
Vitor Santos Costa
2de3917e4a socket testing 2012-10-17 17:30:51 +01:00
Vítor Santos Costa
fb2a17addf improve interface 2012-10-17 10:56:44 +01:00
Vítor Santos Costa
d6b3fc4325 new version. 2012-10-09 20:10:02 +01:00
Vitor Santos Costa
965b48f017 inew version. 2012-10-09 17:29:15 +01:00
Vitor Santos Costa
7c178d2644 newer version 2012-10-09 16:31:09 +01:00
Vítor Santos Costa
ecf5ac655f fun with python 2012-10-08 23:58:22 +01:00
Vitor Santos Costa
c4da6a9c68 update to newer version 2012-10-08 18:27:05 +01:00
Vítor Santos Costa
b24922fd38 fix bdd with em 2012-10-04 00:15:18 +01:00
Vitor Santos Costa
4e43aff605 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-10-03 17:17:24 +01:00
Vitor Santos Costa
93f13c9c8d Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-10-03 17:15:49 +01:00
Vítor Santos Costa
ab14365a30 try to make bdds work with EM. 2012-10-03 10:23:27 +01:00
Vitor Santos Costa
01e1a14160 improve indirect evidence handling in PFL queries (obs from Andrea) 2012-10-03 09:50:50 +01:00
Vítor Santos Costa
e6fb32d9ca fix problem with conditional_probability/3 and evidence (obs from Andrea Sterbini). 2012-10-02 14:26:42 +01:00
Vítor Santos Costa
85e9da1332 hve with em works now. 2012-10-02 08:49:16 +01:00
Tiago Gomes
559b3e3b54 watch out for division by 0 in message calculation for BP 2012-09-30 22:04:44 +01:00
Vítor Santos Costa
793907f710 more EM stuff 2012-09-29 11:50:00 +01:00
Tiago Gomes
fec0bd44b4 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-09-28 22:42:08 +01:00
Vítor Santos Costa
76088ca8b3 support binaries. 2012-09-26 23:10:22 +01:00
Vítor Santos Costa
74fd98832a upgrade compilation flags. 2012-09-26 22:59:22 +01:00
Vitor Santos Costa
7424a7376c fix reverse linking with yap from target library. 2012-09-26 14:49:21 +01:00
Vítor Santos Costa
83c5c7e7af more PFL support. 2012-09-26 00:04:58 +01:00
Tiago Gomes
265766277f Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-09-24 22:23:48 +01:00
Vítor Santos Costa
83418f8f27 bdd and pfl integration work (partial patch). 2012-09-24 14:36:30 +01:00
Vítor Santos Costa
ac863833ff PFL machinery 2012-09-23 13:25:15 +01:00
Vítor Santos Costa
309dfaa813 aggregates in PFL: exa,ple 2012-09-23 13:24:49 +01:00
Vítor Santos Costa
34dc03d43b new version of ve 2012-09-23 13:23:53 +01:00
Vítor Santos Costa
2603f18a10 support factors 2012-09-23 13:23:37 +01:00
Vítor Santos Costa
d73b2ac673 convert keys to numbers. 2012-09-23 13:23:05 +01:00
Vítor Santos Costa
709843717f latest swi repo 2012-09-21 13:11:46 +01:00
Vítor Santos Costa
2673c56982 new version. 2012-09-21 13:08:25 +01:00
Vítor Santos Costa
a3435f5a7b SWI compatibility additions 2012-09-21 13:07:10 +01:00
Vítor Santos Costa
ceb5785120 new commits. 2012-09-18 23:13:07 +01:00
Tiago Gomes
10b15f606a fix counting bp calculation of joint distribution 2012-09-18 17:24:22 +01:00
Tiago Gomes
701911ef09 forgot this 2012-09-11 18:48:54 +01:00
Tiago Gomes
febb17d753 fix factor joint 2012-09-11 18:48:16 +01:00
Tiago Gomes
86b57e961e fix memory leak 2012-09-11 18:40:41 +01:00
Costa Vitor
f4e965c02f more small fixes. 2012-08-29 16:36:46 -05:00
Costa Vitor
62ab5b3dcb new ve 2012-08-28 20:21:14 -05:00
Vítor Santos Costa
05d3266671 fix lib64 issues 2012-08-22 10:07:33 -05:00
Costa Vitor
a76f4f34d5 make EM work with PFL and BP. 2012-08-15 16:01:45 -05:00
Vítor Santos Costa
7e8cac9fb1 a step forward. 2012-08-13 09:23:36 -05:00
Costa Vitor
4756948967 fix processing of pfl ground networks. 2012-08-08 22:16:37 -05:00
Costa Vitor
652073caa4 Merge branch 'master' of git://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-08-08 11:17:50 -05:00
Vitor Santos Costa
ad609e39da Merge branch 'master' of git.dcc.fc.up.pt:yap-6.3 2012-08-08 04:00:06 +01:00
Vitor Santos Costa
d5ed379068 recognise weird trie. 2012-08-08 03:59:37 +01:00
Vitor Santos Costa
15bcaf97fc speedup. 2012-08-08 03:59:06 +01:00
Vítor Santos Costa
2b2cedc2b6 remove some comments and improve em interface. 2012-08-07 21:53:10 -05:00
Vítor Santos Costa
c159894c29 Merge branch 'master' of ssh://git.dcc.fc.up.pt/yap-6.3 2012-08-07 18:37:02 -05:00
Costa Vitor
98f68edd34 PFL files should have the PFL suffiv 2012-08-07 18:35:44 -05:00
Costa Vitor
e2fa3a3b8a fix call to ground solvers, both using clpbn style and horus style. 2012-08-07 18:33:51 -05:00
Vítor Santos Costa
a4ae6acbb6 check for Rinterface.h 2012-08-02 19:53:43 -05:00
Vitor Santos Costa
7458d8ee74 update to newer releases. 2012-08-01 19:48:29 +01:00
Costa Vitor
8ba1de7250 fixes for external CUDD compatibility. 2012-07-16 11:58:21 -05:00
Vitor Santos Costa
d78a55ca83 fix cudd support. 2012-07-08 07:45:16 -05:00
Vítor Santos Costa
bc8c9a423a Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 
Conflicts:
	packages/jpl
 2012-07-07 09:54:27 -05:00
Vítor Santos Costa
1e1d49e112 allow installing examples by defult. 2012-07-07 09:43:07 -05:00
Vítor Santos Costa
d9decfe003 fix example path in meld. 2012-07-06 18:58:35 -05:00
Vítor Santos Costa
8a22258fdf use standard paths for installing examples. 2012-07-06 18:56:05 -05:00
Vitor Santos Costa
c67edd877a learning is debugging 2012-07-03 19:48:13 +01:00
Vitor Santos Costa
b4b1e68c35 Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-07-03 16:03:27 +01:00
Tiago Gomes
4af5a90b8b re-enable all elimination heuristics 2012-07-02 22:53:44 +01:00
Vitor Santos Costa
79b4c6cb25 new version. 2012-07-02 20:04:02 +01:00
Denys Duchier
97163fa150 place INLINE_ONLY at front of extern inline declarations AND definitions. gcc and clang then behave the same. 2012-06-30 20:42:14 +02:00
Tiago Gomes
7a3d39551b improve the way we compute hashs for counting bp 2012-06-30 19:25:29 +01:00
Vítor Santos Costa
70bde4d38f inline extern patch by Denys Duchier 2012-06-29 22:44:08 +01:00
Vítor Santos Costa
20b60649e5 new updates to jpl. 2012-06-29 22:42:08 +01:00
Vítor Santos Costa
e938c17748 fix clang compilation (Denys Duchier). 2012-06-29 22:24:12 +01:00
Tiago Gomes
5e2d9acc4f update comment 2012-06-26 19:44:27 +01:00
Vitor Santos Costa
fe2f99e49d update package version. 2012-06-22 19:00:45 +01:00
Vitor Santos Costa
87e0b67e76 start with pfl learning. 2012-06-22 19:00:12 +01:00
Vitor Santos Costa
5fe052a3ef Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-06-22 14:51:58 +01:00
Tiago Gomes
3e56cf5e42 update burglary-alarm 2012-06-19 21:19:02 +01:00
Tiago Gomes
25e87a5ddc whitespace fixes 2012-06-19 15:30:55 +01:00
Tiago Gomes
57edd6adb9 minor improvements 2012-06-19 15:29:09 +01:00
Tiago Gomes
ee5b8e693a re-activate bayes ball 2012-06-19 15:10:57 +01:00
Tiago Gomes
9a8464d0f0 some renamings 2012-06-19 14:32:12 +01:00
Tiago Gomes
942bc8041e update burglary-alarm 2012-06-18 23:10:18 +01:00
Tiago Gomes
63739c6e31 minor updates 2012-06-18 23:08:37 +01:00
Tiago Gomes
b16b0b6a3f add a README file 2012-06-18 21:38:40 +01:00
Tiago Gomes
b4d2e7af20 remove unecessary call 2012-06-18 14:40:44 +01:00
Tiago Gomes
05b3daf5bb trivial fix 2012-06-14 12:19:51 +01:00
Tiago Gomes
384c108e62 fix joint calculation with lifted bp 2012-06-14 11:57:00 +01:00
Tiago Gomes
0e83a75b60 improve calculation of joint dist in counting bp 2012-06-13 12:47:41 +01:00
Tiago Gomes
b43e3316b3 forgot destructor 2012-06-13 12:17:49 +01:00
Tiago Gomes
89725dffbb rename some enums 2012-06-12 21:27:17 +01:00
Tiago Gomes
af11dbb445 reorder entries in the Makefile and drop some objects not required to build hcli 2012-06-12 16:55:32 +01:00
Tiago Gomes
d4f63b3942 drop Solver suffix and rename some files and classes 2012-06-12 16:29:57 +01:00
Vitor Santos Costa
f6de18cb09 6.2 fix to load_foreign atom. 2012-06-11 22:11:30 +01:00
Tiago Gomes
919116763f add a run all tests script 2012-06-08 14:11:54 +01:00
Tiago Gomes
4cc869a164 update scripts 2012-06-08 14:11:11 +01:00
Tiago Gomes
f8e714dcc3 add social domain benchmark with evidence 2012-06-08 14:08:14 +01:00
Tiago Gomes
51c279d24c increase the cost of the grounding operator 2012-06-08 13:35:00 +01:00
Vitor Santos Costa
31b8cb6440 windows support. 2012-06-08 06:54:03 -05:00
Tiago Gomes
5785260644 fix warning 2012-06-06 15:04:28 +01:00
Tiago Gomes
568bb27a66 forgot this 2012-06-05 15:33:24 +01:00
Tiago Gomes
2cf6a2a33d add benchmark tests for lbp 2012-06-05 15:23:41 +01:00
Vitor Santos Costa
3669cb894f Merge branch 'master' of https://github.com/tacgomes/yap6.3 
Conflicts:
	packages/CLPBN/clpbn/horus.yap
 2012-06-04 16:29:56 +01:00
Tiago Gomes
eec4b1452b print all lifted bp flags 2012-06-01 19:31:07 +01:00
Tiago Gomes
8fa8fff9f1 minor improvements 2012-06-01 19:29:57 +01:00
Tiago Gomes
25ccfa2f54 only allow joint dists on cliques 2012-06-01 19:29:23 +01:00
Tiago Gomes
4708685ed4 fix bug in Factor::contains 2012-06-01 14:03:39 +01:00
Vitor Santos Costa
71a62307f4 CLP(BN) stuff. 2012-06-01 13:17:39 +01:00
Tiago Gomes
ecde9649a8 fix header guard 2012-06-01 12:35:44 +01:00
Tiago Gomes
b5369db214 use only solveQuery 2012-05-31 23:06:53 +01:00
Tiago Gomes
f91e543d9d workaround c++ bad design: don't allow creating a factor graph from some pointer 2012-05-31 22:42:38 +01:00
Tiago Gomes
3f0f41c8a9 cleanup 2012-05-31 21:24:40 +01:00
Tiago Gomes
e11ed1a226 forgot these two 2012-05-31 21:24:15 +01:00
Tiago Gomes
22d8876d33 add support to (real) lifted belief propagation 2012-05-31 21:12:46 +01:00
Tiago Gomes
22780c4559 handle empty vectors in TinySet 2012-05-31 14:57:53 +01:00
Tiago Gomes
7429a39b48 fix a bug on absorving lifted evidence 2012-05-31 14:09:50 +01:00
Tiago Gomes
c2297c3f70 add lbp flag 2012-05-31 12:45:09 +01:00
Tiago Gomes
d00eb05624 use bind2nd instead of bind1st 2012-05-31 12:19:13 +01:00
Tiago Gomes
6668ee6381 add initial skeleton for lifted bp 2012-05-30 19:23:41 +01:00
Tiago Gomes
8d14593c3e add an enum for lifted solvers and do some renamings 2012-05-30 17:17:39 +01:00
Tiago Gomes
ac38e9e6a6 minor improvement 2012-05-29 17:19:49 +01:00
Tiago Gomes
651051484b update TODO 2012-05-29 17:14:29 +01:00
Tiago Gomes
02395daed3 add a sequential elimination heuristic 2012-05-29 17:14:01 +01:00
Tiago Gomes
0315cd51a3 remove repeated elements in TinySet 2012-05-29 17:09:45 +01:00
Tiago Gomes
6feb746412 use STL to calculate L1 distance and max norm 2012-05-29 13:48:08 +01:00
Tiago Gomes
3ac854b2ff use more Util::sizeExpected 2012-05-28 21:27:52 +01:00
Tiago Gomes
54ae29ae02 replace Util::add and Util::multiply by Util::apply_n_times 2012-05-28 21:09:56 +01:00
Tiago Gomes
f489a59194 use std::accumulate to calc the msg size 2012-05-28 20:59:39 +01:00
Tiago Gomes
57e32267fe remove unecessary code 2012-05-28 19:47:20 +01:00
Tiago Gomes
62283f353c some renamings 2012-05-28 19:41:24 +01:00
Tiago Gomes
64b53e8180 minor improvements 2012-05-28 19:10:29 +01:00
Tiago Gomes
004e6c0c5f minor improvements 2012-05-28 18:26:15 +01:00
Tiago Gomes
0cee50496e fix compilation in older gcc 2012-05-28 17:57:45 +01:00
Tiago Gomes
d5c2e6833d use convenient function 2012-05-28 17:43:48 +01:00
Tiago Gomes
0ad8f5fb4a remove whitespace 2012-05-28 17:01:07 +01:00
Tiago Gomes
149f3dab26 fix a bug in exporting to uai format 2012-05-28 17:00:46 +01:00
Tiago Gomes
3ee176c65b fix header guard 2012-05-28 16:59:41 +01:00
Tiago Gomes
f3ca7b2dfc add elementsToString and move things around a bit 2012-05-28 16:57:45 +01:00
Tiago Gomes
1352a526c3 refactor the way we export to libDAI 2012-05-28 14:42:20 +01:00
Tiago Gomes
250d122fc8 prefix is better than postfix 2012-05-28 14:12:18 +01:00
Tiago Gomes
a9c369aac1 size_t invasion, part II 2012-05-28 14:01:05 +01:00
Tiago Gomes
4a02997484 be consistent: s/copy/backup 2012-05-28 12:34:39 +01:00
Tiago Gomes
3986012e56 rename CutIndexer to MapIndexer 2012-05-28 12:32:15 +01:00
Tiago Gomes
3290834dfe be consistent with other functions 2012-05-28 12:24:10 +01:00
Tiago Gomes
fb9bb5c8b5 remove unused method 2012-05-28 12:18:39 +01:00
Tiago Gomes
6034f7a264 refactor the function to reorder arguments 2012-05-28 12:17:47 +01:00
Tiago Gomes
1239832c21 refactor the way we calculate the product of two factors 2012-05-26 20:58:56 +01:00
Tiago Gomes
bc2da47804 add a new handy constructor to CutIndexer class 2012-05-26 20:56:41 +01:00
Tiago Gomes
918666d7f6 add a randomize function 2012-05-26 20:44:39 +01:00
Tiago Gomes
c1bd230e61 small improvement 2012-05-25 21:26:40 +01:00
Tiago Gomes
4b2ffee015 minor renaming 2012-05-25 21:22:48 +01:00
Tiago Gomes
2efca0c85a refactor indexer classes and receive te ranges as a constant reference 2012-05-25 21:16:08 +01:00
Tiago Gomes
5ff161b10f refactor functions for summing out 2012-05-25 20:15:05 +01:00
Tiago Gomes
df8a3c5fdc fix a recent bug in StatesIndexer.h 2012-05-25 14:36:52 +01:00
Tiago Gomes
a56bccf5e5 delete unused method 2012-05-24 23:39:38 +01:00
Tiago Gomes
18d4777d9a use PrvGroup 2012-05-24 23:38:44 +01:00
Tiago Gomes
af6601837c size_t invasion 2012-05-24 22:55:20 +01:00
Tiago Gomes
5124098b6c delete unused code 2012-05-24 16:21:41 +01:00
Tiago Gomes
acc5ab056a some refactorings 2012-05-24 16:14:13 +01:00
Tiago Gomes
444eaacc63 add operators to manipulate vectors of parameters 2012-05-24 14:55:30 +01:00
Tiago Gomes
6cb718942a some renamings 2012-05-23 21:23:03 +01:00
Tiago Gomes
d91e91b97e prefix calls to c++ functions with cpp_ 2012-05-23 20:34:57 +01:00
Tiago Gomes
2b896aecb4 add examples to the Makefile 2012-05-23 19:59:40 +01:00
Tiago Gomes
9f236dccdd rename bp.yap and fove.yap 2012-05-23 19:15:23 +01:00
Tiago Gomes
cf929b6f13 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2012-05-23 17:59:26 +01:00
Tiago Gomes
c04082dc2e move benchmarks one level up 2012-05-23 17:27:21 +01:00
Tiago Gomes
3890aafc1a update examples 2012-05-23 17:17:50 +01:00
Tiago Gomes
bdef49bb20 remove city old example 2012-05-23 15:57:00 +01:00
Tiago Gomes
efec94adff remove two unnecessary files 2012-05-23 15:55:39 +01:00
Tiago Gomes
584e363aa1 move graphical model examples 2012-05-23 15:48:03 +01:00
Tiago Gomes
5b38891c21 third try ... 2012-05-23 14:58:26 +01:00
Tiago Gomes
6c77afb3ae ok, second try 2012-05-23 14:56:01 +01:00
Tiago Gomes
a4d181eb97 update benchmarks 2012-05-23 12:40:34 +01:00
Tiago Gomes
7c3e4ed3ab improve log information 2012-05-23 12:26:14 +01:00
Vitor Santos Costa
9e3d16022a fix YAP_AttOfVar 
beautify get atts
 2012-05-21 17:24:40 +01:00
Tiago Gomes
16cb48fea4 decrease the time required to find an elimination order 2012-05-17 17:29:31 +01:00
Vítor Santos Costa
d68ef3f5a1 fix empty tries. 2012-05-17 09:56:49 +01:00
Tiago Gomes
cf9a7f1413 show the maximum memory used in the benchmarks 2012-05-16 12:31:58 +01:00
Tiago Gomes
5934d9efe9 update TODO 2012-05-16 00:44:59 +01:00
Tiago Gomes
23b180b6f0 merge TinySet and SortedVector classes 2012-05-16 00:41:01 +01:00
Tiago Gomes
354071c261 update scripts 2012-05-15 20:14:13 +01:00
Tiago Gomes
f7ba86d3ed kill Util::abort, s/vectorIndex/indexOf and s/isCarteesianProduct/isCartesianProduct 2012-05-15 19:41:14 +01:00
Tiago Gomes
db0d2c9772 refactor and increase the scope of parfactor multiplication 2012-05-15 19:05:39 +01:00
Tiago Gomes
f4bca3ceea factor overflow will not happen with bp 2012-05-15 19:02:40 +01:00
Tiago Gomes
7ec4887e77 refactor printing of a parfactor 2012-05-15 16:57:50 +01:00
Tiago Gomes
346b70145f improvements on shattering 2012-05-15 16:52:21 +01:00
Tiago Gomes
90e139f8f3 refactor ProbFormula comparation operator 2012-05-15 16:49:34 +01:00
Tiago Gomes
03f9df7dc3 fix a bug when checking of a set of log vars form a cartesian product 2012-05-15 16:46:21 +01:00
Tiago Gomes
1380adcfb5 support getting tuples of repeated log vars 2012-05-15 16:45:24 +01:00
Tiago Gomes
2061eefda2 add a way to copy a log var 2012-05-15 16:43:32 +01:00
Vitor Santos Costa
6c36a8ccd3 make it easier for outside packages to link with YAP innards. 2012-05-14 15:06:18 +01:00
Tiago Gomes
4ade4945a0 improve Util::abort 2012-05-07 17:52:47 +01:00
Tiago Gomes
aeb07d43a7 add two more utility functions 2012-05-07 17:48:15 +01:00
Tiago Gomes
9d5801ef7f ony summout a group of rand vars if they not appear in another position on the parfactor 2012-05-05 23:11:32 +01:00
Tiago Gomes
8e75ef3073 shatter parfactors also against themselves 2012-05-05 21:06:27 +01:00
Tiago Gomes
660e15e2ac update the overflow check in factors, still needs more work tbd 2012-05-04 14:28:07 +01:00
Tiago Gomes
0e01a51929 remove commented code and fix a warning 2012-05-04 14:10:00 +01:00
Tiago Gomes
35d0804f9a update TODO 2012-05-03 13:15:33 +01:00
Tiago Gomes
10ac7720f7 update smokers examples 2012-05-03 11:38:49 +01:00
Tiago Gomes
2bef3f6866 minor updates 2012-05-03 00:56:19 +01:00
Vítor Santos Costa
9b0b6ec649 fix stop_low_level_trace. 
P Moura request for (?).
 2012-05-02 10:09:26 +01:00
Tiago Gomes
92d8c7dcbe add more asserts 2012-04-30 17:49:07 +01:00
Tiago Gomes
ad50166bd0 fix bug in benchmarks script 2012-04-30 16:26:33 +01:00
Tiago Gomes
9971736a45 kill DEBUG constant, its not used any more 2012-04-30 14:50:14 +01:00
Tiago Gomes
7cf8c68e15 fix error message 2012-04-30 14:12:00 +01:00
Tiago Gomes
d6e11ca84d delete order vars flag 2012-04-30 13:02:53 +01:00
Tiago Gomes
fa8ff6d5b6 abort if the factor will become to bigger 2012-04-30 12:48:30 +01:00
Tiago Gomes
85fc4ae50a add missing files 2012-04-30 11:59:59 +01:00
Tiago Gomes
a90bfb7a86 update benchmarks 2012-04-30 11:24:04 +01:00
Tiago Gomes
2fa06da3c9 disable bayes ball for now 2012-04-30 11:20:02 +01:00
Tiago Gomes
185cbe9c73 update examples 2012-04-30 11:16:11 +01:00
Tiago Gomes
56475cacbc revamp debugging plataform 2012-04-29 20:07:09 +01:00
Tiago Gomes
d86e2c8386 don't raise counting log vars before multiplication 2012-04-28 01:10:04 +01:00
Tiago Gomes
1173b4c25b when expanding a counting formula, check if the expanded log vars are still counting log vars 2012-04-28 01:01:23 +01:00
Tiago Gomes
52f4aa0340 sort the parfactors by their parameters when printing 2012-04-27 19:10:22 +01:00
Vítor Santos Costa
067d6d3f4f fix problog experiment. 2012-04-27 16:30:02 +01:00
Vítor Santos Costa
5ee39c6f08 back to original version. 2012-04-27 16:20:40 +01:00
Vítor Santos Costa
6bb4db125d fix names. 2012-04-27 15:33:32 +01:00
Vítor Santos Costa
60184e230d new lbdd stuff. 2012-04-27 15:32:57 +01:00
Vítor Santos Costa
ceb0c1f5ac new support file. 2012-04-27 15:32:17 +01:00
Vítor Santos Costa
823066f9da use library for learning. 2012-04-27 15:30:39 +01:00
Vítor Santos Costa
fd4bf21ece fix file names. 2012-04-27 15:26:44 +01:00
Tiago Gomes
20fc2c8dd1 add debug information to variable elimination 2012-04-27 14:48:48 +01:00
Tiago Gomes
9e1a649262 raising the paramaters to some power should happen after summing out, not before 2012-04-27 14:47:30 +01:00
Tiago Gomes
7599ccd5a1 don't print the paramaters if they are more than 32 2012-04-27 01:19:28 +01:00
Tiago Gomes
af063dcda8 be more precise when calculating the cost of grounding a log var in a formula 2012-04-27 01:18:54 +01:00
Tiago Gomes
995a11be83 improvements in the way we align logical variables 2012-04-26 18:00:06 +01:00
Vítor Santos Costa
fd755f0b7e allow ProbLog to use lbdd. 2012-04-26 13:52:09 +01:00
Tiago Gomes
cc09e77707 remove unnecessary variable 2012-04-26 00:58:06 +01:00
Tiago Gomes
689244a0d8 improve cbp by supporting factors connected to a single var two or more times 2012-04-26 00:54:06 +01:00
Tiago Gomes
ad24a360ce Add a way to summout a dimension given a index instead of a variable id. 
This is required for counting belief propagation.
 2012-04-25 22:59:01 +01:00
Tiago Gomes
fc362fe123 reorder the parameters instead of reordering variables 2012-04-23 22:57:04 +01:00
Tiago Gomes
0ebd6d6e06 improve constructor of VarNode 2012-04-23 22:40:36 +01:00
Tiago Gomes
3397f694fe sort the variable ids when printing all posterioris 2012-04-23 22:12:04 +01:00
Vitor Santos Costa
f24bf2e2cd full school 2012-04-23 07:13:58 -05:00
Vitor Santos Costa
32a905bc8b ddnnf support 2012-04-23 07:13:25 -05:00
Vitor Santos Costa
040c1c7fa7 more ddnnf stuff 2012-04-23 07:13:01 -05:00
Tiago Gomes
d90fcd532b minor update 2012-04-21 17:21:54 +01:00
Tiago Gomes
8c689665a0 support setting flags in horus cli and fix a bug when ordering the variables 2012-04-21 17:14:19 +01:00
Vitor Santos Costa
22f702f8e4 ddnnfs. 2012-04-20 16:43:30 -05:00
Vitor Santos Costa
220f7e6efc support mtbdds. 2012-04-20 16:42:59 -05:00
Tiago Gomes
085ebe1e96 check for overflows when performing expansion 
case the factor size after expansion be bigger than an unsigned integer, abort the program
 2012-04-20 17:16:10 +01:00
Tiago Gomes
0ffa409a80 fix a bug when expanding potential 2012-04-20 14:50:14 +01:00
Vitor Santos Costa
178ad27db8 better understanding of ddnnf. 2012-04-20 07:07:19 -05:00
Tiago Gomes
09697b8461 heuristic to improve results with fove 2012-04-19 18:37:15 +01:00
Tiago Gomes
2b7da4bc23 refactor the way we calculate the grounding cost 2012-04-19 17:59:45 +01:00
Tiago Gomes
661ce08961 check if the factor is not zero when choosing the elimination order 2012-04-19 12:08:27 +01:00
Tiago Gomes
cd1e157019 sort the colors in the signature receveied from a factor (add std namespace) 2012-04-18 19:29:43 +01:00
Tiago Gomes
7c100c96bc sort the colors in the signature receveied from a factor 2012-04-18 19:29:11 +01:00
Tiago Gomes
862e90a36b fix bug in joining constraint trees 2012-04-18 18:14:15 +01:00
Tiago Gomes
61ee95d92a use logarithms to calculate the cost of each fove operator 2012-04-18 16:40:12 +01:00
Tiago Gomes
406276b62b add missing scripts 2012-04-18 13:53:34 +01:00
Tiago Gomes
a7f57bea99 several optimizations on ConstraintTree 2012-04-18 03:05:01 +01:00
Tiago Gomes
cd720497f8 update groups when shattering 2012-04-18 03:04:06 +01:00
Tiago Gomes
bb5d02dbc0 minor updates 2012-04-18 03:03:29 +01:00
Tiago Gomes
dacf6b4e57 update examples 2012-04-18 02:57:24 +01:00
Tiago Gomes
d22b5a97fd add missing scripts 2012-04-18 02:52:31 +01:00
Tiago Gomes
b7e9245f26 refactor and add more benchmarks scripts 2012-04-18 02:49:33 +01:00
Tiago Gomes
d8e757f9ab improvements in the way factorials are computed 2012-04-18 02:46:38 +01:00
Tiago Gomes
cd8714460e add a way of calculate factorials of large numbers 2012-04-17 20:24:40 +01:00
Tiago Gomes
f02d0fb798 add more api to sorted vector implementation 2012-04-17 19:02:56 +01:00
Vítor Santos Costa
40ce9feb76 bdd experiments 2012-04-16 23:47:36 +01:00
Tiago Gomes
5e88510a7d use convenience function 2012-04-16 21:48:13 +01:00
Tiago Gomes
6ab5a4668b change align of some functions 2012-04-16 21:47:06 +01:00
Tiago Gomes
dd0ae564ef adapt to changes in CFactorGraph 2012-04-16 21:45:52 +01:00
Tiago Gomes
779f4ea2ce fix debuging information and s/ds/range 2012-04-16 21:44:04 +01:00
Tiago Gomes
66353e67ec some refactorings 2012-04-16 21:42:14 +01:00
Tiago Gomes
0d5888e238 assign evidence to the pruned factor graph 2012-04-16 21:40:28 +01:00
Tiago Gomes
b27500e93f add nrVarNodes and nrFacNodes 2012-04-16 19:29:55 +01:00
Tiago Gomes
6f7d2af718 add another sorted vector implementation 2012-04-15 21:51:12 +01:00
Tiago Gomes
c32ad3de0a use a sorted vector to store the node childs 2012-04-15 21:44:27 +01:00
Tiago Gomes
5e7b660f44 use iterators instead off indices 2012-04-15 03:19:15 +01:00
Vítor Santos Costa
c385dc13a8 fix syntax 2012-04-15 00:02:37 +01:00
Tiago Gomes
62fedf014b workaround garbage collector error 2012-04-14 18:00:12 +01:00
Tiago Gomes
f1d2889eaa fix warning about uninitialized var 2012-04-14 17:59:04 +01:00
Tiago Gomes
401ad145a5 improve the way the factor graph is constructed from a set from factors 2012-04-14 17:57:24 +01:00
Tiago Gomes
f6e3bb4481 don't assert when suming numbers with negative infinity 2012-04-13 23:12:12 +01:00
Tiago Gomes
24a5fe9c23 add typedef 2012-04-13 15:56:37 +01:00
Tiago Gomes
05ef8610f4 fix warning 2012-04-13 15:47:41 +01:00
Tiago Gomes
00faccd940 implement a printSolverParameters in ground solvers 2012-04-13 15:22:24 +01:00
Tiago Gomes
f3be68a552 add a way to print bool vars 2012-04-13 15:21:11 +01:00
Tiago Gomes
15c8f3abc6 ops 2012-04-12 18:46:21 +01:00
Tiago Gomes
5348c4a989 comment debug information in some prolog files 2012-04-12 18:35:29 +01:00
Vítor Santos Costa
5a8cc421d2 small pfl fixes. 2012-04-12 18:11:29 +01:00
Vítor Santos Costa
c5f42cd7eb more pfl changes. 2012-04-12 17:24:39 +01:00
Vítor Santos Costa
8c2dd1f847 fix bad call for parameters. 2012-04-12 17:17:21 +01:00
Vítor Santos Costa
28ce2da3dc Merge branch 'master' of https://github.com/tacgomes/yap6.3 2012-04-12 17:07:19 +01:00
Tiago Gomes
9def6c2b15 tempary hack to fix cbp and clean in benchs.sh 2012-04-12 00:42:55 +01:00
Tiago Gomes
564958ef8d improvements on benchmarkings 2012-04-11 23:48:59 +01:00
Tiago Gomes
03013960d3 refactor the city benchmarks and introduce set_solver/1 2012-04-11 19:15:52 +01:00
Tiago Gomes
f2fbbf29d8 rework the examples and erase the city network in the old format 2012-04-11 15:36:50 +01:00
Tiago Gomes
8697fcd2b4 refactorings 2012-04-10 20:43:08 +01:00
Tiago Gomes
78e86a6330 refactor ground solver interface 2012-04-10 15:00:18 +01:00
Tiago Gomes
46e6a10625 convert city dataset to new format 2012-04-10 12:56:14 +01:00
Tiago Gomes
b52dc99914 refactorings 2012-04-10 12:53:52 +01:00
Tiago Gomes
aa1b2e40ea some renamings 2012-04-10 11:51:56 +01:00
Tiago Gomes
6986e8c0d7 Improvements 
Factor nodes now contain a factor object instead of a pointer. Refactor the way .fg and .uai formats are readed.
 2012-04-09 15:40:51 +01:00
Tiago Gomes
f1d52c0389 add missing files 2012-04-05 23:04:27 +01:00
Tiago Gomes
d1b25f0864 renamings and delete bn_bp stuff 2012-04-05 23:00:48 +01:00
Tiago Gomes
b28ee8fb3a drop bayesian network representation 2012-04-05 20:08:54 +01:00
Tiago Gomes
abb0410d07 drop suport for Pearl belief propagation 2012-04-05 19:34:37 +01:00
Tiago Gomes
0d23591058 Add support to markov networks 2012-04-05 18:38:56 +01:00
Vítor Santos Costa
bc2364c5dc small fixes 2012-04-04 08:29:20 +01:00
Tiago Gomes
6c3add2ebd first steps in adapting horus ground solvers to pfl 2012-04-03 19:53:27 +01:00
Vítor Santos Costa
2bdec8f725 more PFL fixes. 2012-04-03 17:12:58 +01:00
Vítor Santos Costa
14d142aa10 new example. 2012-04-03 16:23:26 +01:00
Vítor Santos Costa
65e0c3b2a2 more PFL changes. 2012-04-03 16:22:40 +01:00
Vítor Santos Costa
6ccd458ea5 Merge branch 'master' of https://github.com/tacgomes/yap6.3 
Conflicts:
	packages/CLPBN/clpbn/bp.yap
	packages/CLPBN/clpbn/fove.yap
	packages/CLPBN/clpbn/horus.yap
 2012-04-03 15:07:22 +01:00
Vítor Santos Costa
44cb6abcb6 PFL support. 2012-04-03 15:01:35 +01:00
Vítor Santos Costa
e130c26c6d improve bdd support. 2012-04-03 15:01:14 +01:00
Vítor Santos Costa
3d216cf9db iextend bdd support. 2012-04-03 15:00:22 +01:00
Tiago Gomes
911b241ad6 fix align of logical variables 2012-04-03 11:58:21 +01:00
Tiago Gomes
fd8980642b another test 2012-04-01 00:23:03 +01:00
tgomes
c6128c51e8 this is a test 2012-03-31 23:59:05 +01:00
Tiago Gomes
e9cc1a8be2 remove unnecessary files 2012-03-31 23:44:08 +01:00
Tiago Gomes
313f9a036a yay, my first commit 2012-03-31 23:27:37 +01:00
Vítor Santos Costa
3563dcbf03 control for very large bdds. 2012-03-30 09:50:18 +01:00
tgomes
24b466db4e new version. 2012-03-29 12:24:29 +01:00
Vítor Santos Costa
0a9076bf4a bdd 2012-03-28 10:59:26 +01:00
Vítor Santos Costa
9ff1399482 new versions of packages. 2012-03-27 14:59:22 +01:00
Vítor Santos Costa
295cf24f5c extend functionality. 2012-03-27 14:57:43 +01:00
Vítor Santos Costa
cd45c64dcc allow optimisation and preserve ordering. 2012-03-27 14:57:12 +01:00
Vítor Santos Costa
52e5fdb6aa fix typo and export extra 2012-03-25 21:42:49 +01:00
Vítor Santos Costa
7d6b2435e0 fix typo and export extra 2012-03-25 21:42:39 +01:00
Vítor Santos Costa
a38177207d use safer method 2012-03-25 21:41:03 +01:00
Vítor Santos Costa
b6d5b79789 force parent unification when binding two variables with same key 2012-03-25 21:40:29 +01:00
Vítor Santos Costa
7d6461a527 fix order. 2012-03-23 22:26:31 +00:00
Vítor Santos Costa
07335ce047 clp(bn) support 2012-03-22 23:24:09 +00:00
Vítor Santos Costa
6b1574757e fix dist usage. 2012-03-22 22:32:50 +00:00
Vítor Santos Costa
f5f13541c6 old new syntax 2012-03-22 22:23:20 +00:00
Vítor Santos Costa
4c1602b74b old syntax example. 2012-03-22 22:22:16 +00:00
Vítor Santos Costa
6ad2c9b3a9 experimental BDD interface package. 2012-03-22 21:36:44 +00:00
Vítor Santos Costa
a338b95d3f add more support for FOVE. 2012-03-22 19:10:15 +00:00
Vítor Santos Costa
7d4f83ca40 improve examples. 2012-03-22 19:09:31 +00:00
Vítor Santos Costa
172f59cee5 ifix interface to clp(bn) machinery. 2012-03-22 19:08:36 +00:00
Vitor Santos Costa
c85e76f20f new fove version. 2012-03-22 11:40:24 +00:00
Vitor Santos Costa
6191dd210b new version 2012-03-22 11:35:54 +00:00
Vitor Santos Costa
21d317b223 new version of bp 2012-03-22 11:33:24 +00:00
Vitor Santos Costa
6e36498cac new version. 2012-03-22 11:29:46 +00:00
Vítor Santos Costa
8ba0bee7ab updates to packages. 2012-02-17 11:31:55 +00:00
Vítor Santos Costa
48cbed8b20 update to latest release. 2012-02-14 18:58:12 +00:00
Vítor Santos Costa
8c556f21ba include XMLPL package. 2012-02-14 12:41:12 +00:00
Vitor Santos Costa
247aa54046 back to using YAP writer. 2012-02-13 23:07:31 +00:00
Vítor Santos Costa
fc4edc3ad1 update version. 2012-02-13 19:30:00 +00:00
Vítor Santos Costa
70b41fbdb7 iupdate packages. 2012-02-13 11:26:23 +00:00
Vítor Santos Costa
dd762fe664 new versions. 2012-02-13 10:35:05 +00:00
Vítor Santos Costa
32d953809e update packages. 2012-02-13 09:43:50 +00:00
Vítor Santos Costa
64319f622f better SWI support. 2012-02-13 09:41:22 +00:00
Vítor Santos Costa
ea18699602 JPL support patches. 2012-02-12 12:28:37 +00:00
Vítor Santos Costa
73b1a8d6f8 change R configuration. 2012-02-06 11:01:10 +00:00
Vítor Santos Costa
e6fb330f58 fix warnings. 2012-02-03 20:55:35 +00:00
Vítor Santos Costa
ab33cacf7b LAM MPI interface support. 2012-02-02 23:25:31 +00:00
Vítor Santos Costa
4e6cc28cd3 lam support. 2012-02-02 09:58:05 +00:00
Vítor Santos Costa
dddf5bce80 update 2012-02-01 21:01:24 +00:00
Vítor Santos Costa
c4ee7ee0c3 Merge branch 'master' of ssh://git.dcc.fc.up.pt/yap-6.3 
Conflicts:
	.gitmodules
	configure
	packages/real
 2012-02-01 20:57:42 +00:00
Vítor Santos Costa
4c6164034e real stuff. 2012-02-01 20:50:57 +00:00
Vítor Santos Costa
7a99e4f974 fix openmpi/lam detection under Linux/UBUNTU 
fix -I in R interface.
 2012-02-01 10:26:04 +00:00
Vítor Santos Costa
d106c08f8c :make sure we get rid of YapR 2012-02-01 08:58:20 +00:00
Vítor Santos Costa
7fc23ea139 update latest r..eal 2012-02-01 08:49:06 +00:00
Vítor Santos Costa
c6a8f68e67 update to recent real. 2012-01-31 15:15:07 +00:00
Vítor Santos Costa
e4bfd98830 use real package shared with swi. 2012-01-31 15:11:39 +00:00
Vítor Santos Costa
ed0d3f6cae Latest ProbLog 2012-01-11 14:44:59 +00:00
Vítor Santos Costa
2e2e2deb91 new version 2012-01-10 18:50:24 +00:00
Vítor Santos Costa
a25c97c295 fove initial skeleton.w 2012-01-10 17:01:06 +00:00
Vitor Santos Costa
3f97a3f24a new version 2012-01-09 23:31:30 +00:00
Vítor Santos Costa
bf12f320fe fix CPT handling in aggregates. 2011-12-27 22:08:21 +00:00
Vítor Santos Costa
8f3eabef1d support parfactors, first step. 2011-12-27 22:07:42 +00:00
Vítor Santos Costa
d01eec1dbe iupdate changes. 2011-12-22 11:43:30 +00:00
Vítor Santos Costa
7df0fd90f5 Changes by Tiago 2011-12-12 15:30:24 +00:00
Vítor Santos Costa
33bf0bc0f5 new release from Tiago 2011-12-12 15:29:51 +00:00
Vítor Santos Costa
03391e3feb New Version From Tiago 2011-12-10 23:12:10 +00:00
Vítor Santos Costa
dbcb6e530c New Version From Tiago 2011-12-10 22:58:43 +00:00
Vítor Santos Costa
1a4e31e7a0 fix MKINDEX call 2011-12-02 23:09:04 +00:00
Vítor Santos Costa
79d1bf5eec Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 
Conflicts:
	OPTYap/opt.config.h
	OPTYap/opt.structs.h
 2011-11-30 13:24:12 +00:00
Vítor Santos Costa
fec7019a79 fix some warnings 
improve thread support.
 2011-11-30 13:05:21 +00:00
Vítor Santos Costa
2f6ec5ff59 improve learning for CLP(BN). 2011-11-30 13:04:13 +00:00
Vítor Santos Costa
6c1cf7ea39 update to OSX support. 2011-11-18 22:24:46 +00:00
Vítor Santos Costa
e33712403f fix prism compilation and PRISM overflow handling. 2011-11-18 18:33:22 +00:00
Vítor Santos Costa
ae29efec0c iupdate version. 2011-11-18 16:26:41 +00:00
Vítor Santos Costa
0334632e6e improvements to YapR. 2011-11-17 12:58:22 +00:00
Vitor Santos Costa
fedf37ee35 update yapr 2011-11-15 12:59:00 +00:00
Vítor Santos Costa
946887d3b8 update ! 2011-11-15 12:46:03 +00:00
Vítor Santos Costa
df949efdb3 fix god knows what. 2011-11-15 12:40:55 +00:00
U-WIN7\Vitor
a2917e4e9e support R in WIN32. 2011-11-15 04:37:21 -08:00
Vítor Santos Costa
79bcde0869 fix variable that belongs to Makefile.in 2011-11-15 11:18:16 +00:00
Vítor Santos Costa
b7d9e63c17 ifix clib Makefile.in 2011-11-15 11:17:00 +00:00
Vitor Santos Costa
71bedb75f2 fix configuration script to better recognsie R. 2011-11-15 10:22:03 +00:00
Vítor Santos Costa
e865248dce prism logical probabilistic system. 2011-11-10 12:24:47 +00:00
Vítor Santos Costa
3dbae0cb94 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-11-04 02:48:28 +00:00
Vítor Santos Costa
0141113583 fix bug. 2011-11-03 07:53:21 +09:00
fabrizio
016cd42226 no copy of learning algorithms subdirectories 2011-10-31 14:26:18 +01:00
Fabrizio Riguzzi
be449b3aef updated cplint 2011-10-22 16:33:04 +02:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
d173af8d2d fix 2011-10-21 19:14:04 +01:00
Vitor Santos Costa
e56e1cbacb small fixes 2011-09-24 21:39:37 +01:00
Vitor Santos Costa
b2dcc47f9c fix evidence problems. 2011-09-24 21:38:59 +01:00
Vitor Santos Costa
dd9aa08eec fix aleph-params install 2011-09-24 21:37:50 +01:00
Vitor Santos Costa
ff84eaf782 delete_file changed in 6.3. 2011-09-20 14:50:24 +01:00
Vítor Santos Costa
5baf42320b recompute tables when commit. 2011-09-20 09:55:09 +01:00
Vítor Santos Costa
bfc1def1d5 imake sure mutable is available. 2011-09-20 09:54:30 +01:00
Vítor Santos Costa
4855c3460a improve memory usage when storing piointers to evidence facts. 2011-09-15 15:49:57 +01:00
Vítor Santos Costa
cdd33b8c1a new CPLint and ProbLog versions. 2011-09-15 15:49:06 +01:00
Vitor Santos Costa
04f0a4bb73 fix Makefile.in for minisat. 2011-09-06 21:18:30 +02:00
Vitor Santos Costa
01c80d77e0 update latest releaase of ProbLog 2011-09-05 03:07:15 +02:00
Vitor Santos Costa
86c1842cff upgrade to packages and to package docs. 2011-09-05 02:28:34 +02:00
Vitor Santos Costa
fda246f6fc upgradae packages. 2011-09-05 01:11:49 +02:00
Vitor Santos Costa
d38d54b67a small fix to Dialects. 2011-09-05 00:01:41 +02:00
Vitor Santos Costa
9cfd4d8d8b move package/PLStream to os 
modify Makefiles accordingly
define __unix__ on Unix like clones (OSX, AIX, etc).
 2011-09-04 19:42:33 +02:00
Vitor Santos Costa
89023264a3 update branch 2011-09-04 19:32:21 +02:00
Vitor Santos Costa
df45128c8a new version of clib 2011-09-04 19:31:49 +02:00
Vitor Santos Costa
284ac49217 fix wide atom writing. 2011-09-02 23:22:35 +01:00
Vitor Santos Costa
d21888abc9 adjust submodules 2011-08-31 14:11:01 -07:00
Vitor Santos Costa
e19133e362 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-08-22 15:46:52 -03:00
Vitor Santos Costa
6c284faf8b make sure we do a full reset after Scleanup. 2011-08-22 15:45:49 -03:00
Vitor Santos Costa
811606059e try encoding even if . is not in string 2011-08-22 15:45:16 -03:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
b6aca9463d Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-08-18 22:35:13 +01:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
5fa4da2e22 fix win directory access in YAP. 2011-08-18 22:33:49 +01:00
Vitor Santos Costa
2256c3bf8b add timezone flag 2011-08-16 13:31:19 +00:00
Vitor Santos Costa
23be6ccdfc fix wide atom handling. 2011-08-12 11:52:47 -03:00
Vitor Santos Costa
b9effea2e9 fix changes 2011-08-09 08:12:52 -03:00
Vitor Santos Costa
c871761c11 more qly stuff. 2011-08-03 08:23:00 +01:00
Vitor Santos Costa
545a3a2b03 writing hook for opaque terms. 2011-07-30 00:06:52 +01:00
Vitor Santos Costa
0e964c7278 include SWI patch. 2011-07-26 21:05:53 +01:00
Vitor Santos Costa
ffae487cf2 fix path support in WINDOWS. 2011-07-26 18:42:13 +01:00
Vitor Santos Costa
e145910234 windows path support. 2011-07-26 18:41:45 +01:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
5437984815 Merge branch 'master' of /cygdrive/z/vitor/Yap/yap-6.3 2011-07-26 17:07:10 +01:00
Vitor Santos Costa
69f1bedf47 copy error routines from SWI. That was easy. 2011-07-25 23:52:05 +01:00
Vitor Santos Costa
f73d7ef5f6 fixes for WIN32 compilation. 2011-07-25 23:51:45 +01:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
4fe1833ece Merge branch 'master' of /cygdrive/z/vitor/Yap/yap-6.3 2011-07-25 17:09:43 +01:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
840e287cda mode changes 2011-07-25 17:09:28 +01:00
Vitor Santos Costa
69e5fed10f new version of belief propagation solver. 2011-07-22 21:33:30 +01:00
Vitor Santos Costa
a16a7d5b1c fix calling of Write and Read for new SWI style interface. 2011-07-22 15:49:40 +01:00
Vitor Santos Costa
eea7f83e09 fix module stuff. 2011-07-22 14:50:32 +01:00
Vitor Santos Costa
08217b825b update swi packages. 2011-07-22 14:41:17 +01:00
Vitor Santos Costa
c78aa3cf1d fix user-c spying. 2011-07-22 14:10:55 +01:00
Vitor Santos Costa
e4a775925b fix handling of YAP_Blob terms. 2011-07-22 04:09:14 -07:00
Vitor Santos Costa
6fdf6b49f6 fix computation of cut register for either (yapor). 2011-07-21 14:39:57 +01:00
Vitor Santos Costa
de60807724 cleanup patch 2011-07-14 09:40:15 +01:00
Ricardo Rocha
22d8e33a5f fix cut support for or-parallelism 2011-07-13 17:36:26 +01:00
Vitor Santos Costa
45e5e3b983 work if ipackages are missing and some cleanups. 2011-07-13 15:31:22 +01:00
ubu32
2a51403518 fix restore of streams. 2011-07-11 21:15:15 -07:00
ubu32
f968a745e8 fix Scurin in mt 2011-07-11 07:06:20 -07:00
ubu32
2b213963dd use Scurin by default in read/1. 2011-07-10 04:50:55 -07:00
ubu32
04a6911b9f fix warnings. 2011-07-09 09:15:52 -07:00
ubu32
87b99f4d54 update pldoc. 2011-07-09 08:23:12 -07:00
Vitor Santos Costa
1130a3536d fix ProbLog error. 2011-07-04 22:36:57 +01:00
Vitor Santos Costa
9727f3c71c fix warning messages. 2011-07-04 22:36:34 +01:00
Vitor Santos Costa
21050891ee city example. 2011-07-02 09:49:12 +01:00
Vitor Santos Costa
be345a0387 update to recent ProbLog. 2011-06-26 23:13:43 +01:00
Vitor Santos Costa
249010bd90 add SWI compatible file_name_variables flag. 2011-06-21 22:33:10 +01:00
Vítor Santos Costa
53f76eb198 fix Makefile 2011-06-14 11:13:32 +01:00
Vítor Santos Costa
9549277295 fix Makefilew 2011-06-14 09:41:20 +01:00
Vítor Santos Costa
866d2130af disable make_index for now. 2011-06-14 09:39:19 +01:00
Vitor Santos Costa
b3a2f8efb2 new package (pldoc) and updates to several other packages. 2011-06-14 09:17:55 +01:00
Vitor Santos Costa
26c72dcfb1 include ww_browser 2011-06-13 01:57:15 +01:00
Vitor Santos Costa
f10e25b00d update packages. 2011-06-13 01:45:59 +01:00
Vitor Santos Costa
456adc6a4a pldoc seems to be working in YAP. 2011-06-13 01:45:29 +01:00
Vitor Santos Costa
9eabaa580c support for documentation in packages. 2011-06-12 22:26:04 +01:00
Vitor Santos Costa
f04a153e42 flag unavailable before gcc-4.2 2011-06-11 23:07:02 +01:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
48284cfb44 windows console fixes 2011-06-09 17:55:27 +01:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
a0748c7c10 windows interface. 2011-06-06 19:03:20 +01:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
d685b8891f fix compilation flag. 2011-06-06 12:29:28 +01:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
eb700c647d fix lost buffer 2011-06-06 12:29:13 +01:00
Vítor Santos Costa
b1a3b925ae handle variable destroyed by garbage collector. 2011-06-03 12:54:09 +01:00
Vítor Santos Costa
56d71e55b4 remove unecesary files. 2011-06-03 12:26:10 +01:00
Vitor Santos Costa
1962a0507f Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-06-01 14:39:43 +01:00
Vitor Santos Costa
e9171547b9 implementation of bayes ball. 2011-05-27 21:34:55 +01:00
Vítor Santos Costa
791106aa05 these two now include SWI-Stream in Yap.h, so they need PL_KERNEL defined before Yap.h. 2011-05-27 11:49:42 +01:00
Joao
f658a99dad fix C/scanner.c. change some misc/LOCALS initializations. 2011-05-26 15:02:00 +01:00
Joao
98e35b16e8 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-05-25 16:41:39 +01:00
Joao
971ad94311 moved several global variables to misc/GLOBALS 2011-05-25 16:40:36 +01:00
Vítor Santos Costa
14bdc262df export TermToStream 2011-05-25 13:10:39 +01:00
Vitor Santos Costa
b3bd547f55 vel -> ve 2011-05-21 00:27:25 +01:00
Vitor Santos Costa
27dbe24b9e just link if variables have evidence, we can discard other unused variables. 2011-05-21 00:19:53 +01:00
Vitor Santos Costa
adcc2797e1 make sure query variables are accessible from top-level. 2011-05-21 00:15:20 +01:00
Vitor Santos Costa
55e2e6fe3a small fixes 2011-05-20 23:56:12 +01:00
Vitor Santos Costa
6d4d2b5830 fix Makefile for bp 2011-05-19 09:23:32 +01:00
Vitor Santos Costa
b7379a67cc Update CLP(BN) with Tiago's latest version of BP solver. 2011-05-17 12:00:33 +01:00
Joao
bce888bd6d Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-05-11 18:24:25 +01:00
Joao
ab63cd190b LOCALS and GLOBALS are now generated by misc/buildlocalglobal. 2011-05-11 18:22:58 +01:00
Vitor Santos Costa
7122c657c0 more updates to meld. 2011-05-11 09:28:40 +01:00
Vítor Santos Costa
bbf83cb34d extra live should not be needed ... 2011-05-09 22:03:35 +01:00
Ricardo Rocha
a532b6cff3 struct local_optyap_data is now part of struct worker_local (generated from the file LOCALS) 2011-05-09 19:36:51 +01:00
Vitor Santos Costa
72a83eec62 small fixes. 2011-05-08 23:49:06 +01:00
Vitor Santos Costa
925b8fec01 Merge branch 'master' of ssh://yap.git.sf.net/gitroot/yap/yap-6.3 2011-05-08 23:12:44 +01:00
Vitor Santos Costa
77407bc14e improve meld emulation to compile pagerank example. 2011-05-08 23:10:52 +01:00
Joao
d9cee607e9 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 
Conflicts:
	C/cdmgr.c
 2011-05-04 11:10:20 +01:00
Joao
dc3c54c164 change LOCALS macros. 2011-05-04 10:11:41 +01:00
Vitor Santos Costa
bf6033082d Merge branch 'master' of ssh://yap.git.sf.net/gitroot/yap/yap-6.3 2011-05-02 23:31:35 +01:00
Vitor Santos Costa
85c91d72b6 fix example path 2011-05-02 23:28:37 +01:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
772cf833a6 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-05-02 18:23:50 +01:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
a787605c5c fix compilation in win32win64 2011-05-02 18:22:07 +01:00
Vítor Santos Costa
81093f7edd HMM example. 2011-05-01 22:58:35 +01:00
Vítor Santos Costa
63d8536711 move examples upwards. 2011-05-01 22:49:34 +01:00
Vítor Santos Costa
697f7c650c I/O fixes. 2011-04-22 15:29:41 +01:00
Vítor Santos Costa
5488a9bccf for now go back to old tabling trailing 
update YapR
 2011-04-15 10:48:24 +01:00
Vítor Santos Costa
b11a3f894c make sure to initialise both fields in trail entry (helpful for valgrind). 2011-04-13 14:49:03 +01:00
Vítor Santos Costa
49582bf49c recent changes to YapR. 2011-04-04 16:25:14 +01:00
Vítor Santos Costa
e49e59c705 include optimise flag. 2011-04-04 16:23:46 +01:00
Vítor Santos Costa
4ed9df43ac remove Yap_InitPlIO (unused). 2011-04-04 13:55:39 +01:00
Vitor Santos Costa
417fb5c52c includ e6.2 changes for globals. 2011-04-04 13:20:35 +01:00
Vitor Santos Costa
598452c069 fix reinitialization of streams at Restore. 2011-03-28 22:55:28 +01:00
Vitor Santos Costa
889e146f0d update packages 
fix tai loading bug (now compile tai libraries in binary).
 2011-03-27 13:14:42 +01:00
Vitor Santos Costa
9c3d6a187d debugging cleanups 
actually use readline flag.
 2011-03-26 15:45:42 +00:00
Vitor Santos Costa
89d605d6c0 Merge branch 'master' of ssh://yap.git.sf.net/gitroot/yap/yap-6.3 
Conflicts:
	packages/PLStream/pl-file.c
	packages/http
	packages/plunit
	pl/flags.yap
 2011-03-26 15:27:03 +00:00
Vitor Santos Costa
48cd3bd675 use SWI flags. 2011-03-26 15:18:56 +00:00
Vítor Santos Costa
e03acef3f9 use SWI flags. 2011-03-26 15:17:17 +00:00
Vítor Santos Costa
0d9adb7dbc iprogress in submodules. 2011-03-25 23:17:06 +00:00
Vitor Santos Costa
0bd0936683 fix pl-read.c 2011-03-24 22:23:26 +00:00
Vitor Santos Costa
636d66d7ad Merge branch 'master' of ssh://yap.git.sf.net/gitroot/yap/yap-6.3 2011-03-24 21:30:41 +00:00
Vitor Santos Costa
f3debd2f49 fix modules.y 2011-03-24 21:26:01 +00:00
Vítor Santos Costa
9aa4adb0dc update YapR. 2011-03-24 14:07:58 +00:00
Vítor Santos Costa
44f6ce1000 first cut at support for J Azevedo and Rui Camacho's YapR. 2011-03-23 09:46:27 +00:00
Vítor Santos Costa
a8bf2907d5 iupdate dtoa and new versions of packages. 2011-03-22 11:42:05 +00:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
b9b107eaa9 recent versions of packages. 2011-03-22 09:32:59 +00:00
unknown
185151db2a support MINGW 2011-03-21 23:39:25 +00:00
U-WIN-ENP104VVO3U\Vítor Santos Costa
7670ce631b WIN32 patches 2011-03-21 17:07:58 +00:00
Vitor Santos Costa
97f46d5aa9 R support 2011-03-19 15:30:54 +00:00
Vitor Santos Costa
ca952a4eac include R package. 2011-03-19 15:29:06 +00:00
Vitor Santos Costa
97c76adbf4 fix RUNTEX 2011-03-19 15:28:45 +00:00
Vítor Santos Costa
36a0023fbf iimprove SWI compat 2011-03-15 23:49:28 +00:00
Vítor Santos Costa
8421af32e8 support datarootdir 2011-03-15 18:22:05 +00:00
Vítor Santos Costa
d96f9c3fe1 ZLIB support 2011-03-15 18:16:05 +00:00
Vítor Santos Costa
5b27d9fb72 fix submodule 2011-03-15 17:02:56 +00:00
Vítor Santos Costa
73b8478bdb iinclude all modules. 2011-03-15 16:41:33 +00:00
Vítor Santos Costa
123cf5af84 use external module for clib 2011-03-15 16:26:44 +00:00
Vítor Santos Costa
6b5046bb8c use external modules. 2011-03-15 16:22:56 +00:00
Vítor Santos Costa
2a76f86785 don't lock ThreadLocal predicates. 2011-03-15 09:08:09 +00:00
Vítor Santos Costa
656e95f068 fix low level emulation. 2011-03-14 21:03:28 +00:00
Vítor Santos Costa
2d2f5f8702 remove debugging message. 2011-03-14 21:03:13 +00:00
Vítor Santos Costa
0d6be2d858 improve string support 
fix non-thread compilation.
 2011-03-11 23:21:23 +00:00
Vítor Santos Costa
d42db0dc5c ithread_pool (untested). 2011-03-11 21:31:10 +00:00
Vítor Santos Costa
cb192cf26a add get_time. 2011-03-11 20:36:40 +00:00
Vítor Santos Costa
e05b84ce4e fix to thread support. 2011-03-11 19:49:32 +00:00
Vítor Santos Costa
3c5eb3ff7d use SWI version of CLIB 2011-03-10 11:05:53 +00:00
Vítor Santos Costa
4b8a9a4f4e make http an external module. 2011-03-09 23:38:58 +00:00
Vítor Santos Costa
f92f8daa6d fix debugging message. 2011-03-09 22:39:11 +00:00
Vitor Santos Costa
4ad0407388 fix small differences 2011-03-09 13:33:30 +00:00
Vitor Santos Costa
5418f55d74 fix pl-tai 2011-03-09 13:05:03 +00:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
752fa4fc53 support windows compilation, upgrade to current uxnt. 2011-03-09 00:02:21 +00:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
a3f79cede9 WINDOWS compatibility 2011-03-08 00:03:50 +00:00
ubu32
e98ba46ccb make new code work in 32 bit Linux. 2011-03-07 08:34:20 -08:00
Vítor Santos Costa
90d93fdbdd cache abstra machine register in threaded mode. 2011-03-07 16:02:55 +00:00
Vítor Santos Costa
9c3041f1e3 support copying registers in SWI code. 2011-03-03 11:41:21 +00:00
Vítor Santos Costa
da1df3d851 more cleanups. 2011-03-02 23:19:39 +00:00
Vítor Santos Costa
cd287280b3 fix warnings 2011-03-02 09:20:05 +00:00
Vítor Santos Costa
824b5ff88e support critical sections, now that we have Yap.h 2011-03-02 09:19:35 +00:00
Vítor Santos Costa
7f3e510992 get rid of aliasing warnings. 2011-03-02 09:18:51 +00:00
Vítor Santos Costa
d42f4daed0 get rid of unused functions. 2011-03-02 09:18:14 +00:00
Vítor Santos Costa
282760de9c fix an alias warning by replacing cast by an union. 2011-03-02 09:15:30 +00:00
Vítor Santos Costa
b868d85ac8 make rl not deadlock under SIGINT 2011-03-01 12:31:19 +00:00
Vítor Santos Costa
0e447436b3 fix missing lock in OpInfo 2011-03-01 10:32:25 +00:00
Vítor Santos Costa
cce6bb6354 LD should be local to threads. 
get rid of write_depth on YAP side.
 2011-03-01 10:26:25 +00:00
Vítor Santos Costa
31909e3741 fix makefile rules. 
fix dtoa for 64 bit machines
 2011-03-01 09:18:19 +00:00
ubu32
3f6b92de4b enable compilation with multi-threading. 2011-02-27 15:06:10 -08:00
ubu32
f2e8f2ac2e more fixes for bignum support in PLStream. 2011-02-27 03:40:27 -08:00
ubu32
3c261305db interface to rationals. 2011-02-27 02:13:25 -08:00
ubu32
53e8811077 fixes to use SWI version of readline. 2011-02-26 18:34:44 -08:00
Vítor Santos Costa
fbdac55317 rm Makefile, we have Makefile.in 2011-02-25 12:05:51 +00:00
Vítor Santos Costa
11f4ac0e52 remove dump files. 2011-02-25 12:04:46 +00:00
Vítor Santos Costa
f92fa69eab more PLStream stuff. 2011-02-23 17:46:50 +00:00
Vítor Santos Costa
6ea0b727e0 delete executable. 2011-02-23 15:35:17 +00:00
Vítor Santos Costa
29e46cbab9 Experimental code for Tiago Gomes bp solver. 2011-02-23 15:31:56 +00:00
Vitor Santos Costa
4a5ba35937 assembly fixes 
more support for readline, including getting more stuff from read.
 2011-02-17 00:57:49 +00:00
Vitor Santos Costa
d4f11c9fda Merge branch 'master' of ssh://yap.git.sf.net/gitroot/yap/yap-6.3 2011-02-16 21:12:03 +00:00
Vitor Santos Costa
0614a8c26e readline fixes 2011-02-16 21:11:45 +00:00
ubu32
3736a14d9b small fixes 2011-02-15 16:41:32 -08:00
Vitor Santos Costa
dce619f804 compile readline. 2011-02-16 00:23:58 +00:00
Vitor Santos Costa
ef918d8fe4 try compiling pl-rl 2011-02-15 23:45:47 +00:00
Vitor Santos Costa
842f80e928 encoding support. 2011-02-15 22:44:06 +00:00
Vítor Santos Costa
49f980a7a7 small fixes 2011-02-15 19:24:15 +00:00
Vítor Santos Costa
e90a1ce024 avoid repeated fetch 2011-02-15 18:40:18 +00:00
Vítor Santos Costa
ce0874d6be improve code to avoid warning. 2011-02-15 18:39:50 +00:00
Vítor Santos Costa
7b8a25d961 iYAP allows variables to be written as $VAR(-1) -> _ 2011-02-15 18:24:35 +00:00
ubu32
57f5ef8cfc more bug fixes: 
- make readline use packages, not old YAP code
- fix ! over backtrack cps
- fix write list
 2011-02-15 05:54:19 -08:00
ubu32
4dbdaaa772 eplace format 2011-02-14 14:13:45 -08:00
ubu32
f6befe5796 alias stuff. 2011-02-14 06:59:15 -08:00
ubu32
09f4810b76 __APPLE__ is __unix__:w 2011-02-14 06:51:28 -08:00
ubu32
17da004a5f make sure we initialize the OS bits. 2011-02-14 06:49:48 -08:00
Vitor Santos Costa
80f190bc8a use SWI user_*. 2011-02-13 01:03:08 +00:00
Vitor Santos Costa
2d07a7730e remove YAP memory (string) streams. 2011-02-12 18:42:44 +00:00
Vitor Santos Costa
a41627ef1d return time as an int64, not as a float. 2011-02-12 00:45:00 +00:00
Vitor Santos Costa
712300027e include support for working_directory/2 as a system predicate. 2011-02-12 00:26:28 +00:00
Vitor Santos Costa
2451a052cb use text routines from current SWI fli. 2011-02-12 00:17:59 +00:00
Vítor Santos Costa
45032cc61e export current predicate for SWI built-ins. 2011-02-11 19:01:18 +00:00
Vitor Santos Costa
07b17f473a improve non empty files. 2011-02-11 14:17:06 +00:00
Vítor Santos Costa
b475be5692 more SWI compatibility changes. 2011-02-11 01:22:07 +00:00
Vítor Santos Costa
02c791fc3d iminor PLStream fixes. 2011-02-10 21:45:43 +00:00
Vitor Santos Costa
3fe9b923cb more fixes to SWI emulation 
integrate in main binary
 2011-02-10 21:14:38 +00:00
Vitor Santos Costa
841f6eb1e5 YAP updates. 2011-02-10 00:02:05 +00:00
Vitor Santos Costa
232a740d43 upgrade to latest SWI 2011-02-10 00:01:19 +00:00
Vitor Santos Costa
8e8c361671 zlib is now submodule. 2011-02-09 13:11:15 +00:00
Vitor Santos Costa
b00ed6508e move to new sharing structure 2011-02-09 13:10:20 +00:00
Vítor Santos Costa
0ad02c3ee1 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2011-02-08 21:06:02 +00:00
Vítor Santos Costa
54507703fe Merge branch 'master' of ../yap-6.2 2011-02-08 21:05:12 +00:00
Theofrastos Mantadelis
89789e8232 corrected an import bug 2011-02-08 15:57:23 +01:00
Vitor Santos Costa
9bdc7ca96e get rid of references to freed code. 2011-02-04 01:23:01 +00:00
Vitor Santos Costa
c1721df472 Merge branch 'master' of /yap-6.3 
Conflicts:
	C/c_interface.c
 2011-02-03 11:33:50 +00:00
Vitor Santos Costa
48b891a5b2 Merge branch 'master' of ../yap-6.2 2011-02-03 11:27:01 +00:00
U-WIN-U2045GN0RNQ\Vítor Santos Costa
a4a1feeacc improve SWI emulation in WIN32. 2011-02-03 11:23:12 +00:00
Vítor Santos Costa
ea5b0a29b2 Merge branch 'master' of ../yap-6.2 2011-02-02 19:38:32 +00:00
Vítor Santos Costa
cbf6caddbd fix support for comparing weird terms. 2011-02-02 19:37:11 +00:00
Vítor Santos Costa
f840ee307d Merge branch 'master' of ../yap-6.2 2011-02-02 16:15:50 +00:00
Vitor Santos Costa
67ec597966 Merge ../yap-6.2 2011-01-21 08:16:41 -06:00
Theofrastos Mantadelis
457052f661 Corrected a minor ProbLog bug 2011-01-17 12:02:05 +01:00
vsc
150d54d527 fix jpl 2010-12-31 05:39:22 +00:00
vsc
58b838b8e1 fix bad overflow handling 2010-12-31 05:37:25 +00:00
Vitor Santos Costa
fa0e2d6954 Merge branch 'master' of ../yap-6.2 2010-12-30 22:45:06 -06:00
Vitor Santos Costa
5feb6a9dc5 SWI emulation: it is unsafe to keep arguments in regs. 2010-12-30 22:42:30 -06:00
Vitor Santos Costa
7c86b244b9 patches from Keri Harris 2010-12-30 22:14:45 -06:00
Vitor Santos Costa
eb4e59652f fix getStrem in 2010-12-29 09:29:30 -06:00
Theofrastos Mantadelis
8d77ee7769 ProbLog: Added fact map export 2010-12-20 12:36:59 +01:00
Vitor Santos Costa
8cee9a27c7 Merge branch 'master' of ../yap-6.2 2010-12-19 22:07:44 +00:00
Vitor Santos Costa
168a6366f8 enable obtaining current stream_position from SWI.y 2010-12-19 21:32:13 +00:00
Vítor Santos Costa
26c265ba13 Merge branch 'master' of ../yap-6.2 2010-12-17 20:27:26 +00:00
Theofrastos Mantadelis
90041919d4 fixed problogbdd compilation warnings 2010-12-17 12:23:03 +01:00
Vítor Santos Costa
81ca149be7 Merge branch 'master' of ../yap-6.2 2010-12-16 22:22:44 +00:00
Theofrastos Mantadelis
a442d888de Newest ProbLog version 2010-12-16 14:30:50 +01:00
Vítor Santos Costa
2dad416011 Merge branch 'master' of ../yap-6.2 2010-12-15 20:04:13 +00:00
Vítor Santos Costa
4546a22101 SWI seems to use t=0 for user_input/output. Not very clear why... 2010-12-15 20:03:22 +00:00
Vitor Santos Costa
dffacb814b Merge branch 'master' of ../yap-6.2 2010-12-13 12:40:07 +00:00
Vitor Santos Costa
3c4da56af2 allow write to find out about SWI streams in SWI mode. 2010-12-13 12:38:37 +00:00
Vítor Santos Costa
51e9cb14a7 nl should be in the SWI IO (obs from Roberto Bagnara). 2010-12-12 19:07:24 +00:00
Vítor Santos Costa
b086d8b5cd Merge branch 'master' of ../yap-6.2 2010-12-07 18:21:50 +00:00
Vítor Santos Costa
1bbded5ef7 memfiles need swi compat streams. 2010-12-07 18:20:45 +00:00
Vítor Santos Costa
856a32bd19 Merge branch 'master' of ../yap-6.2 2010-12-03 12:13:14 +00:00
Vítor Santos Costa
f8806bed9f explicitely link pthreads in clib. 2010-12-03 12:12:15 +00:00
Vítor Santos Costa
4e0390da5c Merge branch 'master' of ../yap-6.2 2010-12-02 19:42:52 +00:00
Theofrastos Mantadelis
9ee83ddf6c problog examples fix 2010-12-02 15:04:42 +01:00
Theofrastos Mantadelis
f46000cd11 office fix 2010-12-02 15:02:49 +01:00
Theofrastos Mantadelis
df162a0ae6 Updating ProbLog and adding ADs 2010-12-02 14:55:15 +01:00
Theofrastos Mantadelis
b54517d419 Updating ProbLog and adding ADs 2010-12-02 14:54:47 +01:00
Theofrastos Mantadelis
d3cdc8d2b9 Merge branch 'master' of gitosis@yap.dcc.fc.up.pt:yap-6 2010-12-02 14:48:39 +01:00
Theofrastos Mantadelis
6ffa3eb06b ... 2010-12-02 14:48:28 +01:00
Vitor Santos Costa
bb679f15fd Merge ../yap-6.2 2010-11-30 22:34:16 +00:00
Vitor Santos Costa
cb1307ded7 hack to fix differences in SWI compatibility. 2010-11-30 22:33:12 +00:00
Theofrastos Mantadelis
611af95e43 added anottated disjunctions 2010-11-30 19:17:25 +01:00
Vítor Santos Costa
338a6a1b9b Merge branch 'master' of ../yap-6.2 2010-11-29 16:53:32 +00:00
Vítor Santos Costa
eeee1a29b4 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2010-11-29 16:52:56 +00:00
Paulo Moura
e784d72c22 Fixed make clean bug for the tai package (reported by Roberto Bagnara). 2010-11-29 15:36:23 +00:00
Vitor Santos Costa
d1a05d2fb4 Merge ../yap-6.2 2010-11-28 11:53:16 +00:00
Vitor Santos Costa
c47419ed03 better support for YAP portability. 2010-11-28 11:50:21 +00:00
Vitor Santos Costa
bdc497cba0 Merge ../yap-6.2 2010-11-24 08:44:37 +00:00
Vitor Santos Costa
bd59f1e908 process needs maplist (obs from Nicos). 2010-11-24 08:42:26 +00:00
Vítor Santos Costa
ff95134c16 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2010-11-22 18:08:09 +00:00
Vitor Santos Costa
cf59f9aedc Merge ../yap-6.2 2010-11-21 22:12:20 +00:00
Theofrastos Mantadelis
bad796702d follow up for using user defined ground 2010-11-09 15:12:34 +01:00
Theofrastos Mantadelis
94d6c3cebd Added a user modifiable ground handler for ProbLog probabilistic facts 2010-11-09 02:51:24 +01:00
Vítor Santos Costa
60f7678c01 Merge branch 'master' of ssh://yap.git.sourceforge.net/gitroot/yap/yap-6.3 2010-11-08 16:08:51 +00:00
Vitor Santos Costa
f34cd3cfea Merge ../yap-6.2 2010-11-07 19:57:39 +00:00
Vítor Santos Costa
b2b8fc480a Merge branch 'master' of ../yap-6.2 2010-11-05 11:07:22 +00:00
Vitor Santos Costa
916f43c799 makefile for meld plaything 2010-11-05 04:19:51 +00:00
Theofrastos Mantadelis
0a5a1efd77 no comment 2010-11-03 19:34:16 +01:00
Theofrastos Mantadelis
8303b477ab these guys got forgotten 2010-11-03 19:30:43 +01:00
Theofrastos Mantadelis
24b21de2e7 ProbLog Makefile.in to include a new file please re-configure 2010-11-03 19:24:37 +01:00
Theofrastos Mantadelis
c804d105b6 Some ProbLog improvements related with tabling efficiency, more to come soon 2010-11-03 19:22:11 +01:00
Vítor Santos Costa
2f525cb2f3 first attemp at deletion. 2010-11-03 16:16:40 +00:00
Vitor Santos Costa
cca1461747 reentrant maxval and minval. 2010-11-03 09:45:18 +00:00
Vitor Santos Costa
a90e006be0 more meld updates. 2010-11-03 00:33:26 +00:00
Vitor Santos Costa
89ef9ac1e4 integrate meld. 2010-11-01 22:20:58 +00:00
Vitor Santos Costa
216c1b85f3 an implementation of the meld language. 2010-11-01 21:29:12 +00:00
Vitor Santos Costa
95acd408e7 support DragonFly BSD (patch from Aleksej Saushev) 2010-10-27 10:11:19 +01:00
Vitor Santos Costa
9304fd52f7 Merge branch 'master' of yap.dcc.fc.up.pt:yap-6 2010-10-24 21:31:52 +02:00
Vitor Santos Costa
d5785152f8 more HAVE_CONFIG_H patches 2010-10-24 21:28:37 +02:00
Vitor Santos Costa
facebe43e4 doc fixes 
64 bits should use /usr/lib64, not /usr/lib
 2010-10-24 21:26:49 +02:00
Theofrastos Mantadelis
de06131ba4 bug correction 2010-10-20 17:41:13 +02:00
Theofrastos Mantadelis
284fc9ab8b corrected a small bug with export 2010-10-06 18:27:40 +02:00
Theofrastos Mantadelis
1342d2dab2 SimpleCUDD versioning 2010-10-06 13:24:25 +02:00
Theofrastos Mantadelis
d1839b730c ProbLog versioning, ProbLog Tabling warning message instead of error 2010-10-06 12:59:18 +02:00
Theofrastos Mantadelis
ff6bd1dda0 ProbLog Versioning System 2010-10-05 18:29:29 +02:00
Theofrastos Mantadelis
f2e3476a8e ProbLog Versioning System 2010-10-05 18:27:09 +02:00
Theofrastos Mantadelis
5323a3677d ProbLog Versioning System 2010-10-05 18:26:40 +02:00
Theofrastos Mantadelis
c1c02d1e95 Correcting some versioning issues 2010-10-01 12:04:45 +02:00
Theofrastos Mantadelis
69dbf72553 Various ProbLog improvements 2010-10-01 11:40:24 +02:00
Theofrastos Mantadelis
4359629681 ProblogBDD -> problogbdd 2010-09-29 18:43:48 +02:00
Theofrastos Mantadelis
d750a5d5a2 update in learning 2010-09-29 18:40:34 +02:00
Theofrastos Mantadelis
60df0028fb Migrated some minor improvements 2010-09-29 13:08:16 +02:00
Theofrastos Mantadelis
0cd5cec64b Portability issues 2010-09-28 21:22:32 +02:00
Paulo Moura
ce41ab9d33 Make some of the dependencies in library predicates explicit. 2010-09-26 03:31:29 +01:00
Paulo Moura
8e4bb51be0 Make some of the dependencies in library predicates explicit. 2010-09-25 23:34:47 +01:00
Paulo Moura
889e14b46b Fixing minor portability issues 2010-09-25 13:51:03 +01:00
Paulo Moura
d994175e2f Fixed bug in test for the availability of the predicate tries:trie_disable_hash/0. 2010-09-25 04:59:07 +01:00
Paulo Moura
c37a62b2d8 Fixing minor portability issues 2010-09-25 04:09:06 +01:00
Paulo Moura
8cf9568c8b Fixing minor portability issues 2010-09-25 03:46:20 +01:00
Paulo Moura
d5879430da Fixing minor portability issues 2010-09-25 02:30:05 +01:00
Paulo Moura
5d1aa5844a Fixing minor portability issues 2010-09-25 02:24:30 +01:00
Paulo Moura
8ceca88564 Fixing minor portability issues 2010-09-25 01:57:48 +01:00
Theofrastos Mantadelis
639fc74145 a file bug 2010-09-24 17:39:25 +02:00
Theofrastos Mantadelis
5d2f7adb87 fixed makefile 2010-09-24 16:26:54 +02:00
Theofrastos Mantadelis
a8dbd74518 Bernd fixes 2010-09-24 16:02:02 +02:00
Theofrastos Mantadelis
c0b1d3d40d fixing temp structure 2010-09-24 12:42:44 +02:00
Theofrastos Mantadelis
a48d3195b2 oops 2010-09-24 12:35:01 +02:00
Theofrastos Mantadelis
42fc10cf58 Small changes for modularity improvements 2010-09-24 12:33:02 +02:00
Theofrastos Mantadelis
52a4680ac7 corrected filename back 2010-09-23 17:55:19 +02:00
Theofrastos Mantadelis
d498986619 improved tmp file handling 2010-09-23 17:36:22 +02:00
Theofrastos Mantadelis
b5acc03a1c Fixed LICENSE 2010-09-22 11:52:16 +02:00
Theofrastos Mantadelis
048390de0d Corrected a strange bug of ProbLog 2010-09-07 23:21:14 +02:00
Theofrastos Mantadelis
511614ee84 Corrected a minor bug introduced by last edit 2010-09-01 17:40:53 +02:00
Vitor Santos Costa
fb554aadd0 changes for pdf generation in ProbLog. 2010-08-31 15:53:43 -05:00
Theofrastos Mantadelis
1b0483a4e3 ProbLog Manual 2010-08-31 13:30:40 +02:00
Theofrastos Mantadelis
4e04e87ab6 Fixed base case bug, db_trie learning comatibility 2010-08-30 18:12:32 +02:00
Theofrastos Mantadelis
835b099d98 ProbLog - simplecudd Distribution Fixed warnings 2010-08-27 17:54:22 +02:00
Theofrastos Mantadelis
258d8cf997 Merge branch 'master' of gitosis@yap.dcc.fc.up.pt:yap-6 2010-08-27 17:18:23 +02:00
Theofrastos Mantadelis
9cf76e2ab6 ProbLog Distribution 2010-08-27 17:17:01 +02:00
Vitor Santos Costa
6bdf4e4f8e Merge branch 'master' of yap.dcc.fc.up.pt:yap-6 2010-08-26 10:46:01 -05:00
Vitor Santos Costa
6d455421a4 fix Makefile to allow make install direct 2010-08-26 10:45:33 -05:00
Theofrastos Mantadelis
0c83231d0e New ProbLog Distribution Version - all 2010-08-26 14:44:10 +02:00
Theofrastos Mantadelis
a35f51b9d0 New ProbLog Distribution Version 2010-08-26 14:41:18 +02:00
Theofrastos Mantadelis
87f2588752 New ProbLog Distribution Version 2010-08-26 14:40:50 +02:00
Vitor Santos Costa
431482ac40 fix DESTDIR issues (by Keri Harris). 2010-08-08 00:33:29 +01:00
Vitor Santos Costa
7997f2e217 remove left-over files. 2010-08-05 22:35:16 +01:00
Vítor Santos Costa
f63915b07a Merge branch 'master' of yap.dcc.fc.up.pt:yap-6 2010-08-05 22:20:47 +01:00
Vítor Santos Costa
35686156ca fix Makefiles so that make clean forces recompilation everywhere. 2010-08-05 22:18:46 +01:00
Vitor Santos Costa
b3b61bcecc FIXED: make install clpqr was broken if we used local install_sh 2010-08-04 22:35:57 +01:00
Vitor Santos Costa
7bf8187bba remove atan2 (WG17 UD #175) 2010-08-04 22:09:08 +01:00
U-vsc-win7\vsc
1a11df148d Merge branch 'master' of yap.dcc.fc.up.pt:yap-6 2010-08-04 18:26:02 +01:00
U-vsc-win7\vsc
41a648c816 mingw compilation fixes 2010-08-04 18:05:46 +01:00
Vítor Santos Costa
f1977f5dab allow saving and restoring current arguments to/from slots. 2010-08-04 17:36:20 +01:00
Vítor Santos Costa
bebb236e32 improve SWI compatibility, especilaly for threaded stuff. 2010-08-04 11:37:12 +01:00
Vítor Santos Costa
e913087190 improvements in SWI emulation, especially for text. 2010-08-04 02:46:26 +01:00
Vítor Santos Costa
8df9099cbe make it run under YAP. 2010-08-04 02:44:41 +01:00
Vítor Santos Costa
ce73eb5683 avoid conflict 2010-08-04 02:44:05 +01:00
Vítor Santos Costa
366d6e0a8e depends on shlib 2010-08-04 02:43:14 +01:00